Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22920

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22910 and AO353_22915 are separated by 216 nucleotidesAO353_22915 and AO353_22920 overlap by 4 nucleotidesAO353_22920 and AO353_22925 are separated by 190 nucleotides AO353_22910: AO353_22910 - histidine kinase, at 5,026,746 to 5,028,827 _22910 AO353_22915: AO353_22915 - oxidoreductase, at 5,029,044 to 5,029,790 _22915 AO353_22920: AO353_22920 - GntR family transcriptional regulator, at 5,029,787 to 5,031,196 _22920 AO353_22925: AO353_22925 - (Fe-S)-binding protein, at 5,031,387 to 5,032,799 _22925 Position (kb) 5029 5030 5031 5032Strain fitness (log2 ratio) -2 -1 0 1 2at 5028.796 kb on + strandat 5028.796 kb on + strandat 5028.796 kb on + strandat 5028.796 kb on + strandat 5028.797 kb on - strandat 5028.797 kb on - strandat 5028.797 kb on - strandat 5028.797 kb on - strandat 5028.797 kb on - strandat 5028.797 kb on - strandat 5029.000 kb on - strandat 5029.094 kb on + strandat 5029.094 kb on + strandat 5029.094 kb on + strandat 5029.095 kb on - strandat 5029.095 kb on - strandat 5029.095 kb on - strandat 5029.140 kb on + strand, within AO353_22915at 5029.141 kb on - strand, within AO353_22915at 5029.503 kb on + strand, within AO353_22915at 5029.503 kb on + strand, within AO353_22915at 5029.504 kb on - strand, within AO353_22915at 5029.504 kb on - strand, within AO353_22915at 5029.614 kb on + strand, within AO353_22915at 5029.614 kb on + strand, within AO353_22915at 5029.614 kb on + strand, within AO353_22915at 5029.614 kb on + strand, within AO353_22915at 5029.615 kb on - strandat 5029.615 kb on - strand, within AO353_22915at 5029.615 kb on - strand, within AO353_22915at 5029.615 kb on - strand, within AO353_22915at 5029.615 kb on - strand, within AO353_22915at 5029.615 kb on - strand, within AO353_22915at 5029.722 kb on - strandat 5029.749 kb on + strandat 5029.749 kb on + strandat 5029.750 kb on - strandat 5029.788 kb on + strandat 5029.811 kb on + strandat 5029.857 kb on + strandat 5029.857 kb on + strandat 5029.857 kb on + strandat 5029.858 kb on - strandat 5029.870 kb on + strandat 5029.995 kb on + strand, within AO353_22920at 5029.996 kb on - strand, within AO353_22920at 5030.038 kb on - strand, within AO353_22920at 5030.334 kb on + strandat 5030.335 kb on - strand, within AO353_22920at 5030.335 kb on - strand, within AO353_22920at 5030.335 kb on - strand, within AO353_22920at 5030.335 kb on - strand, within AO353_22920at 5030.586 kb on + strand, within AO353_22920at 5030.586 kb on + strand, within AO353_22920at 5030.586 kb on + strand, within AO353_22920at 5030.587 kb on - strandat 5030.587 kb on - strand, within AO353_22920at 5030.587 kb on - strand, within AO353_22920at 5030.718 kb on + strand, within AO353_22920at 5030.718 kb on + strandat 5030.719 kb on - strand, within AO353_22920at 5030.719 kb on - strand, within AO353_22920at 5031.007 kb on - strand, within AO353_22920at 5031.054 kb on + strand, within AO353_22920at 5031.054 kb on + strand, within AO353_22920at 5031.055 kb on - strand, within AO353_22920at 5031.055 kb on - strand, within AO353_22920at 5031.055 kb on - strand, within AO353_22920at 5031.055 kb on - strand, within AO353_22920at 5031.057 kb on + strandat 5031.057 kb on + strandat 5031.057 kb on + strandat 5031.091 kb on - strandat 5031.198 kb on + strandat 5031.198 kb on + strandat 5031.198 kb on + strandat 5031.198 kb on + strandat 5031.199 kb on - strandat 5031.299 kb on - strandat 5031.299 kb on - strandat 5031.649 kb on + strand, within AO353_22925at 5031.650 kb on - strand, within AO353_22925at 5031.650 kb on - strand, within AO353_22925at 5031.650 kb on - strand, within AO353_22925at 5031.650 kb on - strand, within AO353_22925at 5031.844 kb on + strand, within AO353_22925at 5031.844 kb on + strand, within AO353_22925at 5031.845 kb on - strand, within AO353_22925at 5031.845 kb on - strand, within AO353_22925at 5031.845 kb on - strand, within AO353_22925at 5031.845 kb on - strand, within AO353_22925at 5031.903 kb on - strand, within AO353_22925at 5031.903 kb on - strand, within AO353_22925at 5031.903 kb on - strand, within AO353_22925at 5031.903 kb on - strand, within AO353_22925at 5031.903 kb on - strand, within AO353_22925at 5031.903 kb on - strand, within AO353_22925at 5032.120 kb on + strand, within AO353_22925at 5032.121 kb on - strand, within AO353_22925at 5032.121 kb on - strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.130 kb on + strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.131 kb on - strand, within AO353_22925at 5032.172 kb on - strand, within AO353_22925at 5032.172 kb on - strand, within AO353_22925at 5032.172 kb on - strand, within AO353_22925

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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5,028,796 + +0.1
5,028,796 + +0.8
5,028,796 + +2.1
5,028,796 + -1.3
5,028,797 - -1.3
5,028,797 - -0.8
5,028,797 - -0.4
5,028,797 - -1.9
5,028,797 - -0.1
5,028,797 - +1.8
5,029,000 - +0.6
5,029,094 + -0.4
5,029,094 + -0.2
5,029,094 + -0.1
5,029,095 - -1.1
5,029,095 - +0.8
5,029,095 - +0.8
5,029,140 + AO353_22915 0.13 -2.1
5,029,141 - AO353_22915 0.13 +1.2
5,029,503 + AO353_22915 0.61 +0.8
5,029,503 + AO353_22915 0.61 +0.6
5,029,504 - AO353_22915 0.62 -0.8
5,029,504 - AO353_22915 0.62 +0.7
5,029,614 + AO353_22915 0.76 -0.1
5,029,614 + AO353_22915 0.76 -2.7
5,029,614 + AO353_22915 0.76 +0.2
5,029,614 + AO353_22915 0.76 -0.5
5,029,615 - -0.4
5,029,615 - AO353_22915 0.76 +0.6
5,029,615 - AO353_22915 0.76 +0.6
5,029,615 - AO353_22915 0.76 -0.5
5,029,615 - AO353_22915 0.76 -1.2
5,029,615 - AO353_22915 0.76 +0.2
5,029,722 - +0.8
5,029,749 + -1.0
5,029,749 + -1.1
5,029,750 - +1.0
5,029,788 + +0.6
5,029,811 + +0.1
5,029,857 + -0.2
5,029,857 + -0.7
5,029,857 + +0.3
5,029,858 - +0.4
5,029,870 + -0.3
5,029,995 + AO353_22920 0.15 -0.7
5,029,996 - AO353_22920 0.15 -0.4
5,030,038 - AO353_22920 0.18 -0.9
5,030,334 + +1.8
5,030,335 - AO353_22920 0.39 -0.5
5,030,335 - AO353_22920 0.39 -0.7
5,030,335 - AO353_22920 0.39 +0.3
5,030,335 - AO353_22920 0.39 -1.0
5,030,586 + AO353_22920 0.57 -1.3
5,030,586 + AO353_22920 0.57 -0.8
5,030,586 + AO353_22920 0.57 +0.5
5,030,587 - +0.8
5,030,587 - AO353_22920 0.57 -0.1
5,030,587 - AO353_22920 0.57 -0.4
5,030,718 + AO353_22920 0.66 -0.5
5,030,718 + +0.2
5,030,719 - AO353_22920 0.66 -0.7
5,030,719 - AO353_22920 0.66 +0.8
5,031,007 - AO353_22920 0.87 -0.5
5,031,054 + AO353_22920 0.90 -0.7
5,031,054 + AO353_22920 0.90 -0.5
5,031,055 - AO353_22920 0.90 -0.2
5,031,055 - AO353_22920 0.90 -0.5
5,031,055 - AO353_22920 0.90 +0.7
5,031,055 - AO353_22920 0.90 -0.7
5,031,057 + +0.6
5,031,057 + -0.3
5,031,057 + -0.8
5,031,091 - +0.1
5,031,198 + +0.7
5,031,198 + -1.4
5,031,198 + +1.2
5,031,198 + -0.3
5,031,199 - +0.8
5,031,299 - -0.9
5,031,299 - +0.1
5,031,649 + AO353_22925 0.19 -1.3
5,031,650 - AO353_22925 0.19 -1.2
5,031,650 - AO353_22925 0.19 -1.8
5,031,650 - AO353_22925 0.19 -0.8
5,031,650 - AO353_22925 0.19 -1.8
5,031,844 + AO353_22925 0.32 +1.0
5,031,844 + AO353_22925 0.32 -2.3
5,031,845 - AO353_22925 0.32 +0.3
5,031,845 - AO353_22925 0.32 -0.9
5,031,845 - AO353_22925 0.32 -1.2
5,031,845 - AO353_22925 0.32 -1.3
5,031,903 - AO353_22925 0.37 -0.1
5,031,903 - AO353_22925 0.37 -0.1
5,031,903 - AO353_22925 0.37 +1.3
5,031,903 - AO353_22925 0.37 -1.0
5,031,903 - AO353_22925 0.37 -0.0
5,031,903 - AO353_22925 0.37 -0.7
5,032,120 + AO353_22925 0.52 -0.1
5,032,121 - AO353_22925 0.52 -0.9
5,032,121 - AO353_22925 0.52 -1.0
5,032,130 + AO353_22925 0.53 -1.8
5,032,130 + AO353_22925 0.53 -1.7
5,032,130 + AO353_22925 0.53 +0.4
5,032,130 + AO353_22925 0.53 -0.2
5,032,130 + AO353_22925 0.53 +0.5
5,032,130 + AO353_22925 0.53 +0.4
5,032,130 + AO353_22925 0.53 -2.7
5,032,130 + AO353_22925 0.53 +0.8
5,032,130 + AO353_22925 0.53 -0.5
5,032,130 + AO353_22925 0.53 +0.6
5,032,130 + AO353_22925 0.53 +1.1
5,032,130 + AO353_22925 0.53 +1.8
5,032,130 + AO353_22925 0.53 +0.6
5,032,130 + AO353_22925 0.53 -0.1
5,032,130 + AO353_22925 0.53 +0.3
5,032,130 + AO353_22925 0.53 +1.5
5,032,130 + AO353_22925 0.53 -1.7
5,032,130 + AO353_22925 0.53 -0.8
5,032,130 + AO353_22925 0.53 +0.5
5,032,130 + AO353_22925 0.53 -1.0
5,032,130 + AO353_22925 0.53 -0.7
5,032,130 + AO353_22925 0.53 +0.1
5,032,130 + AO353_22925 0.53 +0.8
5,032,130 + AO353_22925 0.53 +0.6
5,032,130 + AO353_22925 0.53 -0.8
5,032,131 - AO353_22925 0.53 +1.5
5,032,131 - AO353_22925 0.53 +1.8
5,032,131 - AO353_22925 0.53 -0.3
5,032,131 - AO353_22925 0.53 -0.1
5,032,131 - AO353_22925 0.53 +0.7
5,032,131 - AO353_22925 0.53 -0.1
5,032,131 - AO353_22925 0.53 -0.3
5,032,131 - AO353_22925 0.53 +1.0
5,032,131 - AO353_22925 0.53 +0.3
5,032,131 - AO353_22925 0.53 -0.6
5,032,131 - AO353_22925 0.53 +0.3
5,032,131 - AO353_22925 0.53 -0.3
5,032,131 - AO353_22925 0.53 -1.9
5,032,131 - AO353_22925 0.53 +0.4
5,032,131 - AO353_22925 0.53 -0.4
5,032,131 - AO353_22925 0.53 +0.3
5,032,131 - AO353_22925 0.53 -0.3
5,032,131 - AO353_22925 0.53 -1.2
5,032,131 - AO353_22925 0.53 +0.8
5,032,131 - AO353_22925 0.53 +0.3
5,032,131 - AO353_22925 0.53 -0.5
5,032,131 - AO353_22925 0.53 +0.8
5,032,131 - AO353_22925 0.53 -0.4
5,032,131 - AO353_22925 0.53 +1.1
5,032,131 - AO353_22925 0.53 -0.1
5,032,131 - AO353_22925 0.53 -1.1
5,032,131 - AO353_22925 0.53 -1.1
5,032,131 - AO353_22925 0.53 -0.7
5,032,172 - AO353_22925 0.56 -0.2
5,032,172 - AO353_22925 0.56 -2.1
5,032,172 - AO353_22925 0.56 -0.0

Or see this region's nucleotide sequence