Experiment: Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_20180 and AO353_20185 are separated by 198 nucleotides AO353_20185 and AO353_20190 are separated by 147 nucleotides AO353_20190 and AO353_20195 are separated by 53 nucleotides AO353_20195 and AO353_20200 are separated by 101 nucleotides
AO353_20180: AO353_20180 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 4,434,467 to 4,435,750
_20180
AO353_20185: AO353_20185 - DNA-binding protein, at 4,435,949 to 4,438,345
_20185
AO353_20190: AO353_20190 - DNA-binding protein HU, at 4,438,493 to 4,438,765
_20190
AO353_20195: AO353_20195 - tRNA-Asp, at 4,438,819 to 4,438,895
_20195
AO353_20200: AO353_20200 - peptidylprolyl isomerase, at 4,438,997 to 4,440,856
_20200
Position (kb)
4435
4436
4437
4438
4439 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4435.479 kb on - strand, within AO353_20180 at 4435.622 kb on + strand at 4435.622 kb on + strand at 4435.622 kb on + strand at 4435.623 kb on - strand at 4435.677 kb on + strand at 4435.677 kb on + strand at 4435.677 kb on + strand at 4435.677 kb on + strand at 4435.677 kb on + strand at 4435.677 kb on + strand at 4435.678 kb on - strand at 4435.678 kb on - strand at 4435.700 kb on + strand at 4435.700 kb on + strand at 4435.700 kb on + strand at 4435.700 kb on + strand at 4435.700 kb on + strand at 4435.700 kb on + strand at 4435.700 kb on + strand at 4435.700 kb on + strand at 4435.700 kb on + strand at 4435.700 kb on + strand at 4435.700 kb on + strand at 4435.700 kb on + strand at 4435.700 kb on + strand at 4435.701 kb on - strand at 4435.701 kb on - strand at 4435.701 kb on - strand at 4435.701 kb on - strand at 4435.701 kb on - strand at 4435.701 kb on - strand at 4435.701 kb on - strand at 4435.701 kb on - strand at 4435.701 kb on - strand at 4435.701 kb on - strand at 4435.701 kb on - strand at 4435.701 kb on - strand at 4435.701 kb on - strand at 4435.702 kb on + strand at 4435.702 kb on + strand at 4435.702 kb on + strand at 4435.702 kb on + strand at 4435.703 kb on - strand at 4435.703 kb on - strand at 4435.706 kb on + strand at 4435.706 kb on + strand at 4435.706 kb on + strand at 4435.706 kb on + strand at 4435.707 kb on - strand at 4435.707 kb on - strand at 4435.768 kb on + strand at 4435.768 kb on + strand at 4435.855 kb on + strand at 4435.856 kb on - strand at 4435.856 kb on - strand at 4435.903 kb on + strand at 4435.903 kb on + strand at 4435.903 kb on + strand at 4435.904 kb on - strand at 4435.936 kb on + strand at 4436.141 kb on + strand at 4436.357 kb on + strand, within AO353_20185 at 4436.358 kb on - strand, within AO353_20185 at 4436.408 kb on - strand, within AO353_20185 at 4436.619 kb on - strand, within AO353_20185 at 4436.621 kb on + strand, within AO353_20185 at 4436.621 kb on + strand, within AO353_20185 at 4436.816 kb on + strand, within AO353_20185 at 4436.817 kb on - strand, within AO353_20185 at 4436.910 kb on - strand, within AO353_20185 at 4436.956 kb on - strand, within AO353_20185 at 4437.128 kb on + strand, within AO353_20185 at 4437.128 kb on + strand, within AO353_20185 at 4437.128 kb on + strand, within AO353_20185 at 4437.128 kb on + strand, within AO353_20185 at 4437.128 kb on + strand, within AO353_20185 at 4437.129 kb on - strand, within AO353_20185 at 4437.129 kb on - strand, within AO353_20185 at 4437.129 kb on - strand, within AO353_20185 at 4437.129 kb on - strand, within AO353_20185 at 4437.302 kb on + strand, within AO353_20185 at 4437.449 kb on + strand, within AO353_20185 at 4437.450 kb on - strand, within AO353_20185 at 4437.539 kb on + strand, within AO353_20185 at 4437.540 kb on - strand, within AO353_20185 at 4437.967 kb on + strand, within AO353_20185 at 4437.967 kb on + strand, within AO353_20185 at 4437.978 kb on + strand, within AO353_20185 at 4438.054 kb on + strand, within AO353_20185 at 4438.054 kb on + strand, within AO353_20185 at 4438.287 kb on + strand at 4438.287 kb on + strand at 4438.321 kb on + strand at 4438.343 kb on + strand at 4438.343 kb on + strand at 4438.343 kb on + strand at 4438.343 kb on + strand at 4438.346 kb on + strand at 4438.346 kb on + strand at 4438.346 kb on + strand at 4438.346 kb on + strand at 4438.346 kb on + strand at 4438.346 kb on + strand at 4438.346 kb on + strand at 4438.346 kb on + strand at 4438.350 kb on + strand at 4438.350 kb on + strand at 4438.350 kb on + strand at 4438.350 kb on + strand at 4438.382 kb on + strand at 4438.382 kb on + strand at 4438.394 kb on + strand at 4438.408 kb on + strand at 4438.408 kb on + strand at 4438.408 kb on + strand at 4438.408 kb on + strand at 4438.408 kb on + strand at 4438.418 kb on + strand at 4438.473 kb on + strand at 4438.479 kb on + strand at 4438.489 kb on + strand at 4438.763 kb on + strand at 4438.763 kb on + strand at 4438.933 kb on + strand at 4439.108 kb on - strand at 4439.108 kb on - strand at 4439.116 kb on + strand at 4439.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM remove 4,435,479 - AO353_20180 0.79 +0.3 4,435,622 + +0.1 4,435,622 + -0.9 4,435,622 + -0.2 4,435,623 - +0.6 4,435,677 + -0.9 4,435,677 + +1.3 4,435,677 + -0.9 4,435,677 + -1.2 4,435,677 + -1.0 4,435,677 + -1.2 4,435,678 - -1.5 4,435,678 - -2.7 4,435,700 + +0.1 4,435,700 + +0.5 4,435,700 + -0.2 4,435,700 + -0.1 4,435,700 + +0.1 4,435,700 + -1.1 4,435,700 + +0.8 4,435,700 + -2.5 4,435,700 + -0.5 4,435,700 + -1.1 4,435,700 + +0.6 4,435,700 + +0.3 4,435,700 + +0.5 4,435,701 - -2.1 4,435,701 - -0.1 4,435,701 - -0.7 4,435,701 - -1.1 4,435,701 - +0.2 4,435,701 - -2.2 4,435,701 - +0.2 4,435,701 - -0.4 4,435,701 - -1.2 4,435,701 - -1.5 4,435,701 - -0.2 4,435,701 - -0.8 4,435,701 - -0.7 4,435,702 + -0.6 4,435,702 + -0.4 4,435,702 + +0.7 4,435,702 + +0.3 4,435,703 - +0.5 4,435,703 - -0.7 4,435,706 + -0.5 4,435,706 + -0.7 4,435,706 + -0.3 4,435,706 + -0.1 4,435,707 - -1.5 4,435,707 - -0.5 4,435,768 + +1.5 4,435,768 + +0.2 4,435,855 + +0.4 4,435,856 - -0.0 4,435,856 - +0.4 4,435,903 + +0.4 4,435,903 + -0.4 4,435,903 + +1.0 4,435,904 - +0.1 4,435,936 + -0.8 4,436,141 + -1.1 4,436,357 + AO353_20185 0.17 -0.3 4,436,358 - AO353_20185 0.17 -0.8 4,436,408 - AO353_20185 0.19 -0.7 4,436,619 - AO353_20185 0.28 -1.2 4,436,621 + AO353_20185 0.28 -0.2 4,436,621 + AO353_20185 0.28 -1.2 4,436,816 + AO353_20185 0.36 -0.4 4,436,817 - AO353_20185 0.36 -3.0 4,436,910 - AO353_20185 0.40 -1.4 4,436,956 - AO353_20185 0.42 -1.2 4,437,128 + AO353_20185 0.49 -1.7 4,437,128 + AO353_20185 0.49 -0.2 4,437,128 + AO353_20185 0.49 -2.2 4,437,128 + AO353_20185 0.49 -0.9 4,437,128 + AO353_20185 0.49 -1.1 4,437,129 - AO353_20185 0.49 -1.2 4,437,129 - AO353_20185 0.49 -0.5 4,437,129 - AO353_20185 0.49 -0.9 4,437,129 - AO353_20185 0.49 +0.1 4,437,302 + AO353_20185 0.56 -1.0 4,437,449 + AO353_20185 0.63 -0.1 4,437,450 - AO353_20185 0.63 -0.7 4,437,539 + AO353_20185 0.66 -0.1 4,437,540 - AO353_20185 0.66 -2.7 4,437,967 + AO353_20185 0.84 +0.5 4,437,967 + AO353_20185 0.84 -2.0 4,437,978 + AO353_20185 0.85 +0.5 4,438,054 + AO353_20185 0.88 -0.4 4,438,054 + AO353_20185 0.88 +0.3 4,438,287 + +0.2 4,438,287 + -2.0 4,438,321 + -0.8 4,438,343 + -0.3 4,438,343 + +0.6 4,438,343 + -2.0 4,438,343 + -1.7 4,438,346 + +0.6 4,438,346 + -1.0 4,438,346 + +1.2 4,438,346 + -0.2 4,438,346 + -1.8 4,438,346 + -0.3 4,438,346 + -0.6 4,438,346 + +0.5 4,438,350 + +1.4 4,438,350 + +0.1 4,438,350 + +0.1 4,438,350 + +1.2 4,438,382 + -0.8 4,438,382 + -0.7 4,438,394 + -0.1 4,438,408 + -0.7 4,438,408 + +1.3 4,438,408 + +0.3 4,438,408 + -0.1 4,438,408 + -1.4 4,438,418 + +0.4 4,438,473 + +1.2 4,438,479 + -1.2 4,438,489 + +0.1 4,438,763 + -2.1 4,438,763 + +1.8 4,438,933 + +0.2 4,439,108 - -0.8 4,439,108 - +1.1 4,439,116 + -1.4 4,439,116 + +0.1
Or see this region's nucleotide sequence