Experiment: Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07435 and AO353_07440 are separated by 165 nucleotides AO353_07440 and AO353_07445 overlap by 4 nucleotides AO353_07445 and AO353_07450 overlap by 29 nucleotides
AO353_07435: AO353_07435 - pyrroloquinoline quinone biosynthesis protein PqqB, at 1,637,305 to 1,638,216
_07435
AO353_07440: AO353_07440 - pyrroloquinoline quinone biosynthesis protein PqqC, at 1,638,382 to 1,639,134
_07440
AO353_07445: AO353_07445 - pyrroloquinoline quinone biosynthesis protein PqqD, at 1,639,131 to 1,639,406
_07445
AO353_07450: AO353_07450 - pyrroloquinoline quinone biosynthesis protein PqqE, at 1,639,378 to 1,640,553
_07450
Position (kb)
1639
1640 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1638.190 kb on + strand at 1638.191 kb on - strand at 1638.214 kb on + strand at 1638.214 kb on + strand at 1638.214 kb on + strand at 1638.214 kb on + strand at 1638.214 kb on + strand at 1638.214 kb on + strand at 1638.214 kb on + strand at 1638.215 kb on - strand at 1638.215 kb on - strand at 1638.215 kb on - strand at 1638.215 kb on - strand at 1638.215 kb on - strand at 1638.215 kb on - strand at 1638.215 kb on - strand at 1638.215 kb on - strand at 1638.262 kb on - strand at 1638.262 kb on - strand at 1638.363 kb on + strand at 1638.442 kb on + strand at 1638.443 kb on - strand at 1638.443 kb on - strand at 1638.443 kb on - strand at 1638.443 kb on - strand at 1638.445 kb on + strand at 1638.445 kb on + strand at 1638.446 kb on - strand at 1638.446 kb on - strand at 1638.446 kb on - strand at 1638.446 kb on - strand at 1638.463 kb on + strand, within AO353_07440 at 1638.464 kb on - strand, within AO353_07440 at 1638.478 kb on + strand, within AO353_07440 at 1638.478 kb on + strand, within AO353_07440 at 1638.478 kb on + strand, within AO353_07440 at 1638.478 kb on + strand, within AO353_07440 at 1638.478 kb on + strand, within AO353_07440 at 1638.478 kb on + strand, within AO353_07440 at 1638.478 kb on + strand, within AO353_07440 at 1638.479 kb on - strand, within AO353_07440 at 1638.479 kb on - strand, within AO353_07440 at 1638.479 kb on - strand, within AO353_07440 at 1638.479 kb on - strand, within AO353_07440 at 1638.479 kb on - strand, within AO353_07440 at 1638.532 kb on + strand, within AO353_07440 at 1638.532 kb on + strand, within AO353_07440 at 1638.532 kb on + strand, within AO353_07440 at 1638.532 kb on + strand, within AO353_07440 at 1638.532 kb on + strand, within AO353_07440 at 1638.533 kb on - strand, within AO353_07440 at 1638.533 kb on - strand, within AO353_07440 at 1638.533 kb on - strand, within AO353_07440 at 1638.533 kb on - strand, within AO353_07440 at 1638.533 kb on - strand, within AO353_07440 at 1638.535 kb on + strand, within AO353_07440 at 1638.535 kb on + strand, within AO353_07440 at 1638.535 kb on + strand, within AO353_07440 at 1638.535 kb on + strand, within AO353_07440 at 1638.536 kb on - strand, within AO353_07440 at 1638.536 kb on - strand, within AO353_07440 at 1638.536 kb on - strand, within AO353_07440 at 1638.536 kb on - strand, within AO353_07440 at 1638.760 kb on + strand, within AO353_07440 at 1638.760 kb on + strand, within AO353_07440 at 1638.760 kb on + strand, within AO353_07440 at 1638.760 kb on + strand, within AO353_07440 at 1638.760 kb on + strand, within AO353_07440 at 1638.761 kb on - strand, within AO353_07440 at 1638.761 kb on - strand, within AO353_07440 at 1638.761 kb on - strand, within AO353_07440 at 1638.761 kb on - strand, within AO353_07440 at 1638.761 kb on - strand, within AO353_07440 at 1638.761 kb on - strand, within AO353_07440 at 1638.761 kb on - strand, within AO353_07440 at 1638.896 kb on - strand, within AO353_07440 at 1638.896 kb on - strand, within AO353_07440 at 1638.901 kb on + strand, within AO353_07440 at 1638.901 kb on + strand, within AO353_07440 at 1638.901 kb on + strand, within AO353_07440 at 1638.901 kb on + strand, within AO353_07440 at 1638.901 kb on + strand, within AO353_07440 at 1638.902 kb on - strand, within AO353_07440 at 1638.902 kb on - strand, within AO353_07440 at 1638.902 kb on - strand, within AO353_07440 at 1638.970 kb on + strand, within AO353_07440 at 1638.970 kb on + strand, within AO353_07440 at 1638.970 kb on + strand, within AO353_07440 at 1638.970 kb on + strand, within AO353_07440 at 1638.970 kb on + strand, within AO353_07440 at 1638.970 kb on + strand, within AO353_07440 at 1638.971 kb on - strand, within AO353_07440 at 1638.971 kb on - strand, within AO353_07440 at 1638.971 kb on - strand, within AO353_07440 at 1638.971 kb on - strand, within AO353_07440 at 1638.971 kb on - strand, within AO353_07440 at 1638.971 kb on - strand, within AO353_07440 at 1638.971 kb on - strand, within AO353_07440 at 1638.971 kb on - strand, within AO353_07440 at 1638.971 kb on - strand, within AO353_07440 at 1638.971 kb on - strand, within AO353_07440 at 1638.971 kb on - strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.979 kb on + strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.980 kb on - strand, within AO353_07440 at 1638.981 kb on + strand, within AO353_07440 at 1638.982 kb on - strand, within AO353_07440 at 1638.982 kb on - strand, within AO353_07440 at 1638.982 kb on - strand, within AO353_07440 at 1638.982 kb on - strand, within AO353_07440 at 1639.063 kb on + strand at 1639.063 kb on + strand at 1639.064 kb on - strand at 1639.064 kb on - strand at 1639.064 kb on - strand at 1639.064 kb on - strand at 1639.064 kb on - strand at 1639.064 kb on - strand at 1639.084 kb on + strand at 1639.116 kb on + strand at 1639.116 kb on + strand at 1639.116 kb on + strand at 1639.116 kb on + strand at 1639.117 kb on - strand at 1639.117 kb on - strand at 1639.130 kb on + strand at 1639.130 kb on + strand at 1639.186 kb on - strand, within AO353_07445 at 1639.219 kb on - strand, within AO353_07445 at 1639.280 kb on + strand, within AO353_07445 at 1639.454 kb on + strand at 1639.478 kb on - strand at 1639.478 kb on - strand at 1639.478 kb on - strand at 1639.501 kb on + strand, within AO353_07450 at 1639.501 kb on + strand, within AO353_07450 at 1639.501 kb on + strand, within AO353_07450 at 1639.502 kb on - strand, within AO353_07450 at 1639.681 kb on + strand, within AO353_07450 at 1639.681 kb on + strand, within AO353_07450 at 1639.682 kb on - strand, within AO353_07450 at 1639.682 kb on - strand, within AO353_07450 at 1639.682 kb on - strand, within AO353_07450 at 1639.682 kb on - strand, within AO353_07450 at 1639.682 kb on - strand, within AO353_07450 at 1639.682 kb on - strand, within AO353_07450 at 1639.682 kb on - strand, within AO353_07450 at 1639.797 kb on + strand, within AO353_07450 at 1639.797 kb on + strand, within AO353_07450 at 1639.797 kb on + strand, within AO353_07450 at 1639.797 kb on + strand, within AO353_07450 at 1639.797 kb on + strand, within AO353_07450 at 1639.797 kb on + strand, within AO353_07450 at 1639.797 kb on + strand, within AO353_07450 at 1639.798 kb on - strand, within AO353_07450 at 1639.798 kb on - strand, within AO353_07450 at 1639.798 kb on - strand, within AO353_07450 at 1639.857 kb on - strand, within AO353_07450 at 1639.941 kb on + strand, within AO353_07450 at 1639.941 kb on + strand, within AO353_07450 at 1639.941 kb on + strand, within AO353_07450 at 1639.941 kb on + strand, within AO353_07450 at 1639.941 kb on + strand, within AO353_07450 at 1639.942 kb on - strand, within AO353_07450 at 1639.942 kb on - strand, within AO353_07450 at 1639.942 kb on - strand, within AO353_07450 at 1639.942 kb on - strand, within AO353_07450 at 1639.942 kb on - strand, within AO353_07450 at 1639.942 kb on - strand, within AO353_07450 at 1639.942 kb on - strand, within AO353_07450 at 1639.988 kb on - strand, within AO353_07450 at 1639.988 kb on - strand, within AO353_07450 at 1639.988 kb on - strand, within AO353_07450 at 1640.128 kb on + strand, within AO353_07450 at 1640.128 kb on + strand, within AO353_07450 at 1640.128 kb on + strand, within AO353_07450 at 1640.129 kb on - strand, within AO353_07450 at 1640.131 kb on + strand, within AO353_07450 at 1640.131 kb on + strand, within AO353_07450 at 1640.131 kb on + strand, within AO353_07450 at 1640.131 kb on + strand, within AO353_07450 at 1640.131 kb on + strand, within AO353_07450 at 1640.132 kb on - strand, within AO353_07450 at 1640.282 kb on - strand, within AO353_07450 at 1640.282 kb on - strand, within AO353_07450 at 1640.315 kb on - strand, within AO353_07450
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM remove 1,638,190 + -0.2 1,638,191 - +0.6 1,638,214 + -0.2 1,638,214 + -1.0 1,638,214 + +1.8 1,638,214 + +0.6 1,638,214 + +0.3 1,638,214 + +0.5 1,638,214 + -0.9 1,638,215 - -0.3 1,638,215 - -2.4 1,638,215 - +1.2 1,638,215 - -0.5 1,638,215 - +0.5 1,638,215 - -1.6 1,638,215 - +1.2 1,638,215 - -0.0 1,638,262 - +0.7 1,638,262 - +0.3 1,638,363 + +2.0 1,638,442 + +0.6 1,638,443 - -0.9 1,638,443 - -0.2 1,638,443 - -0.5 1,638,443 - +0.5 1,638,445 + +0.5 1,638,445 + +1.3 1,638,446 - +0.8 1,638,446 - -1.0 1,638,446 - +1.3 1,638,446 - -0.7 1,638,463 + AO353_07440 0.11 -1.4 1,638,464 - AO353_07440 0.11 -0.3 1,638,478 + AO353_07440 0.13 -1.0 1,638,478 + AO353_07440 0.13 +0.2 1,638,478 + AO353_07440 0.13 -1.8 1,638,478 + AO353_07440 0.13 -1.3 1,638,478 + AO353_07440 0.13 -1.2 1,638,478 + AO353_07440 0.13 -0.9 1,638,478 + AO353_07440 0.13 -0.8 1,638,479 - AO353_07440 0.13 -1.0 1,638,479 - AO353_07440 0.13 -2.9 1,638,479 - AO353_07440 0.13 -0.7 1,638,479 - AO353_07440 0.13 -1.0 1,638,479 - AO353_07440 0.13 -1.7 1,638,532 + AO353_07440 0.20 +0.9 1,638,532 + AO353_07440 0.20 -1.7 1,638,532 + AO353_07440 0.20 +3.0 1,638,532 + AO353_07440 0.20 -1.7 1,638,532 + AO353_07440 0.20 +0.3 1,638,533 - AO353_07440 0.20 +0.8 1,638,533 - AO353_07440 0.20 +0.8 1,638,533 - AO353_07440 0.20 +1.6 1,638,533 - AO353_07440 0.20 +0.0 1,638,533 - AO353_07440 0.20 +0.0 1,638,535 + AO353_07440 0.20 -0.2 1,638,535 + AO353_07440 0.20 -0.2 1,638,535 + AO353_07440 0.20 -0.1 1,638,535 + AO353_07440 0.20 +1.1 1,638,536 - AO353_07440 0.20 -0.3 1,638,536 - AO353_07440 0.20 -0.6 1,638,536 - AO353_07440 0.20 +0.2 1,638,536 - AO353_07440 0.20 +0.2 1,638,760 + AO353_07440 0.50 -0.1 1,638,760 + AO353_07440 0.50 -0.1 1,638,760 + AO353_07440 0.50 -1.2 1,638,760 + AO353_07440 0.50 +0.0 1,638,760 + AO353_07440 0.50 -0.2 1,638,761 - AO353_07440 0.50 -0.9 1,638,761 - AO353_07440 0.50 +1.4 1,638,761 - AO353_07440 0.50 +0.3 1,638,761 - AO353_07440 0.50 -0.8 1,638,761 - AO353_07440 0.50 -0.2 1,638,761 - AO353_07440 0.50 +0.5 1,638,761 - AO353_07440 0.50 +1.3 1,638,896 - AO353_07440 0.68 -0.1 1,638,896 - AO353_07440 0.68 -0.2 1,638,901 + AO353_07440 0.69 -0.2 1,638,901 + AO353_07440 0.69 +0.6 1,638,901 + AO353_07440 0.69 -0.2 1,638,901 + AO353_07440 0.69 +1.7 1,638,901 + AO353_07440 0.69 -0.7 1,638,902 - AO353_07440 0.69 -0.0 1,638,902 - AO353_07440 0.69 +0.2 1,638,902 - AO353_07440 0.69 -0.5 1,638,970 + AO353_07440 0.78 +0.2 1,638,970 + AO353_07440 0.78 -0.7 1,638,970 + AO353_07440 0.78 +0.7 1,638,970 + AO353_07440 0.78 -0.7 1,638,970 + AO353_07440 0.78 +0.1 1,638,970 + AO353_07440 0.78 -0.3 1,638,971 - AO353_07440 0.78 +0.2 1,638,971 - AO353_07440 0.78 +1.0 1,638,971 - AO353_07440 0.78 -0.9 1,638,971 - AO353_07440 0.78 +0.3 1,638,971 - AO353_07440 0.78 -0.1 1,638,971 - AO353_07440 0.78 +0.2 1,638,971 - AO353_07440 0.78 -0.3 1,638,971 - AO353_07440 0.78 -0.6 1,638,971 - AO353_07440 0.78 -2.1 1,638,971 - AO353_07440 0.78 +0.4 1,638,971 - AO353_07440 0.78 +0.0 1,638,979 + AO353_07440 0.79 -1.6 1,638,979 + AO353_07440 0.79 -0.9 1,638,979 + AO353_07440 0.79 +0.7 1,638,979 + AO353_07440 0.79 -0.1 1,638,979 + AO353_07440 0.79 +0.0 1,638,979 + AO353_07440 0.79 +1.0 1,638,979 + AO353_07440 0.79 -1.2 1,638,979 + AO353_07440 0.79 +1.3 1,638,979 + AO353_07440 0.79 -1.8 1,638,979 + AO353_07440 0.79 -0.8 1,638,979 + AO353_07440 0.79 +1.2 1,638,979 + AO353_07440 0.79 +0.7 1,638,979 + AO353_07440 0.79 -1.2 1,638,979 + AO353_07440 0.79 -0.5 1,638,979 + AO353_07440 0.79 -1.0 1,638,979 + AO353_07440 0.79 +0.2 1,638,980 - AO353_07440 0.79 +0.4 1,638,980 - AO353_07440 0.79 -0.2 1,638,980 - AO353_07440 0.79 -0.3 1,638,980 - AO353_07440 0.79 -0.6 1,638,980 - AO353_07440 0.79 -0.4 1,638,980 - AO353_07440 0.79 -1.0 1,638,980 - AO353_07440 0.79 -1.3 1,638,980 - AO353_07440 0.79 -0.8 1,638,980 - AO353_07440 0.79 +0.3 1,638,980 - AO353_07440 0.79 -0.3 1,638,980 - AO353_07440 0.79 -0.2 1,638,980 - AO353_07440 0.79 +1.0 1,638,980 - AO353_07440 0.79 -0.5 1,638,980 - AO353_07440 0.79 +0.0 1,638,980 - AO353_07440 0.79 -0.7 1,638,980 - AO353_07440 0.79 +1.3 1,638,981 + AO353_07440 0.80 -0.4 1,638,982 - AO353_07440 0.80 +0.4 1,638,982 - AO353_07440 0.80 +0.3 1,638,982 - AO353_07440 0.80 -0.8 1,638,982 - AO353_07440 0.80 -0.2 1,639,063 + -1.2 1,639,063 + +0.5 1,639,064 - -0.4 1,639,064 - -1.2 1,639,064 - -0.1 1,639,064 - +0.3 1,639,064 - -0.4 1,639,064 - -0.2 1,639,084 + +1.4 1,639,116 + +1.6 1,639,116 + -0.3 1,639,116 + -0.2 1,639,116 + -0.2 1,639,117 - +0.7 1,639,117 - +0.4 1,639,130 + -1.1 1,639,130 + +0.6 1,639,186 - AO353_07445 0.20 -1.6 1,639,219 - AO353_07445 0.32 -0.2 1,639,280 + AO353_07445 0.54 -2.9 1,639,454 + +1.3 1,639,478 - -0.2 1,639,478 - +0.3 1,639,478 - +0.2 1,639,501 + AO353_07450 0.10 -0.4 1,639,501 + AO353_07450 0.10 -1.8 1,639,501 + AO353_07450 0.10 -1.1 1,639,502 - AO353_07450 0.11 +0.3 1,639,681 + AO353_07450 0.26 +0.7 1,639,681 + AO353_07450 0.26 -1.2 1,639,682 - AO353_07450 0.26 +0.6 1,639,682 - AO353_07450 0.26 -0.7 1,639,682 - AO353_07450 0.26 -0.2 1,639,682 - AO353_07450 0.26 +0.8 1,639,682 - AO353_07450 0.26 -1.3 1,639,682 - AO353_07450 0.26 +0.6 1,639,682 - AO353_07450 0.26 -0.2 1,639,797 + AO353_07450 0.36 +1.2 1,639,797 + AO353_07450 0.36 +0.5 1,639,797 + AO353_07450 0.36 -0.4 1,639,797 + AO353_07450 0.36 -1.0 1,639,797 + AO353_07450 0.36 -0.1 1,639,797 + AO353_07450 0.36 -0.9 1,639,797 + AO353_07450 0.36 +0.4 1,639,798 - AO353_07450 0.36 -1.6 1,639,798 - AO353_07450 0.36 +1.7 1,639,798 - AO353_07450 0.36 -1.0 1,639,857 - AO353_07450 0.41 +0.7 1,639,941 + AO353_07450 0.48 +0.4 1,639,941 + AO353_07450 0.48 +1.5 1,639,941 + AO353_07450 0.48 -0.7 1,639,941 + AO353_07450 0.48 -0.6 1,639,941 + AO353_07450 0.48 -1.2 1,639,942 - AO353_07450 0.48 -0.2 1,639,942 - AO353_07450 0.48 -1.0 1,639,942 - AO353_07450 0.48 +0.4 1,639,942 - AO353_07450 0.48 -0.7 1,639,942 - AO353_07450 0.48 +0.1 1,639,942 - AO353_07450 0.48 +0.3 1,639,942 - AO353_07450 0.48 +0.3 1,639,988 - AO353_07450 0.52 -1.9 1,639,988 - AO353_07450 0.52 -1.5 1,639,988 - AO353_07450 0.52 -0.4 1,640,128 + AO353_07450 0.64 +0.7 1,640,128 + AO353_07450 0.64 +1.6 1,640,128 + AO353_07450 0.64 -0.4 1,640,129 - AO353_07450 0.64 +0.7 1,640,131 + AO353_07450 0.64 -0.7 1,640,131 + AO353_07450 0.64 +0.2 1,640,131 + AO353_07450 0.64 -0.0 1,640,131 + AO353_07450 0.64 +0.9 1,640,131 + AO353_07450 0.64 -1.3 1,640,132 - AO353_07450 0.64 +2.0 1,640,282 - AO353_07450 0.77 -0.9 1,640,282 - AO353_07450 0.77 -1.2 1,640,315 - AO353_07450 0.80 +0.4
Or see this region's nucleotide sequence