Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004258 and ABIE53_004259 overlap by 151 nucleotides ABIE53_004259 and ABIE53_004260 are separated by 151 nucleotides ABIE53_004260 and ABIE53_004261 are separated by 26 nucleotides
ABIE53_004258: ABIE53_004258 - beta-alanine--pyruvate transaminase, at 431,836 to 433,164
_004258
ABIE53_004259: ABIE53_004259 - hypothetical protein, at 433,014 to 433,739
_004259
ABIE53_004260: ABIE53_004260 - hypothetical protein, at 433,891 to 434,142
_004260
ABIE53_004261: ABIE53_004261 - branched-chain amino acid transport system substrate-binding protein, at 434,169 to 435,377
_004261
Position (kb) 433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 432.214 kb on + strand, within ABIE53_004258 at 432.541 kb on + strand, within ABIE53_004258 at 432.541 kb on + strand, within ABIE53_004258 at 432.542 kb on - strand, within ABIE53_004258 at 432.542 kb on - strand, within ABIE53_004258 at 432.646 kb on + strand, within ABIE53_004258 at 432.793 kb on + strand, within ABIE53_004258 at 432.794 kb on - strand, within ABIE53_004258 at 432.799 kb on + strand, within ABIE53_004258 at 432.799 kb on + strand, within ABIE53_004258 at 432.800 kb on - strand, within ABIE53_004258 at 432.800 kb on - strand, within ABIE53_004258 at 432.800 kb on - strand, within ABIE53_004258 at 432.850 kb on + strand, within ABIE53_004258 at 432.851 kb on - strand, within ABIE53_004258 at 433.015 kb on + strand at 433.015 kb on + strand at 433.016 kb on - strand at 433.063 kb on - strand at 433.063 kb on - strand at 433.163 kb on - strand at 433.163 kb on - strand at 433.241 kb on - strand, within ABIE53_004259 at 433.839 kb on + strand at 433.839 kb on + strand at 433.839 kb on + strand at 433.840 kb on - strand at 433.840 kb on - strand at 433.840 kb on - strand at 433.840 kb on - strand at 433.840 kb on - strand at 433.894 kb on + strand at 433.923 kb on + strand, within ABIE53_004260 at 433.924 kb on - strand, within ABIE53_004260 at 433.952 kb on - strand, within ABIE53_004260 at 434.102 kb on - strand, within ABIE53_004260 at 434.102 kb on - strand, within ABIE53_004260 at 434.102 kb on - strand, within ABIE53_004260 at 434.140 kb on + strand at 434.170 kb on + strand at 434.170 kb on + strand at 434.171 kb on - strand at 434.171 kb on - strand at 434.171 kb on - strand at 434.171 kb on - strand at 434.234 kb on - strand at 434.234 kb on - strand at 434.234 kb on - strand at 434.240 kb on - strand at 434.287 kb on + strand at 434.288 kb on - strand at 434.323 kb on + strand, within ABIE53_004261 at 434.323 kb on + strand, within ABIE53_004261 at 434.324 kb on - strand, within ABIE53_004261 at 434.324 kb on - strand, within ABIE53_004261 at 434.324 kb on - strand, within ABIE53_004261 at 434.324 kb on - strand, within ABIE53_004261 at 434.345 kb on + strand, within ABIE53_004261 at 434.345 kb on + strand, within ABIE53_004261 at 434.346 kb on - strand, within ABIE53_004261 at 434.440 kb on + strand, within ABIE53_004261 at 434.467 kb on + strand, within ABIE53_004261 at 434.468 kb on - strand, within ABIE53_004261 at 434.476 kb on + strand, within ABIE53_004261 at 434.476 kb on + strand, within ABIE53_004261 at 434.477 kb on - strand, within ABIE53_004261 at 434.477 kb on - strand, within ABIE53_004261 at 434.477 kb on - strand, within ABIE53_004261 at 434.488 kb on + strand, within ABIE53_004261 at 434.531 kb on - strand, within ABIE53_004261 at 434.590 kb on + strand, within ABIE53_004261 at 434.590 kb on + strand, within ABIE53_004261 at 434.591 kb on - strand, within ABIE53_004261 at 434.649 kb on - strand, within ABIE53_004261 at 434.649 kb on - strand, within ABIE53_004261 at 434.649 kb on - strand, within ABIE53_004261
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 432,214 + ABIE53_004258 0.28 -0.4 432,541 + ABIE53_004258 0.53 -2.2 432,541 + ABIE53_004258 0.53 +1.9 432,542 - ABIE53_004258 0.53 -1.1 432,542 - ABIE53_004258 0.53 +3.7 432,646 + ABIE53_004258 0.61 -1.1 432,793 + ABIE53_004258 0.72 -0.5 432,794 - ABIE53_004258 0.72 +0.2 432,799 + ABIE53_004258 0.72 -1.4 432,799 + ABIE53_004258 0.72 -1.5 432,800 - ABIE53_004258 0.73 -1.3 432,800 - ABIE53_004258 0.73 +0.3 432,800 - ABIE53_004258 0.73 -0.4 432,850 + ABIE53_004258 0.76 +0.8 432,851 - ABIE53_004258 0.76 +1.2 433,015 + -0.9 433,015 + +0.0 433,016 - -1.5 433,063 - +3.6 433,063 - +0.9 433,163 - -0.1 433,163 - +1.4 433,241 - ABIE53_004259 0.31 +0.7 433,839 + +0.3 433,839 + +1.6 433,839 + +0.2 433,840 - -0.7 433,840 - -1.2 433,840 - +1.2 433,840 - -0.6 433,840 - +0.8 433,894 + +3.2 433,923 + ABIE53_004260 0.13 +3.2 433,924 - ABIE53_004260 0.13 +1.2 433,952 - ABIE53_004260 0.24 -0.4 434,102 - ABIE53_004260 0.84 +3.0 434,102 - ABIE53_004260 0.84 +0.2 434,102 - ABIE53_004260 0.84 -0.8 434,140 + -0.8 434,170 + +2.2 434,170 + -1.7 434,171 - +0.2 434,171 - -2.8 434,171 - -0.8 434,171 - +1.3 434,234 - +0.4 434,234 - -0.1 434,234 - -0.1 434,240 - -0.8 434,287 + +0.2 434,288 - -0.9 434,323 + ABIE53_004261 0.13 -1.1 434,323 + ABIE53_004261 0.13 -1.2 434,324 - ABIE53_004261 0.13 -0.7 434,324 - ABIE53_004261 0.13 +0.0 434,324 - ABIE53_004261 0.13 -0.7 434,324 - ABIE53_004261 0.13 -0.8 434,345 + ABIE53_004261 0.15 +0.6 434,345 + ABIE53_004261 0.15 +0.6 434,346 - ABIE53_004261 0.15 -0.3 434,440 + ABIE53_004261 0.22 -0.6 434,467 + ABIE53_004261 0.25 -1.9 434,468 - ABIE53_004261 0.25 -0.8 434,476 + ABIE53_004261 0.25 +0.9 434,476 + ABIE53_004261 0.25 -0.7 434,477 - ABIE53_004261 0.25 -0.8 434,477 - ABIE53_004261 0.25 -1.7 434,477 - ABIE53_004261 0.25 -0.4 434,488 + ABIE53_004261 0.26 -0.4 434,531 - ABIE53_004261 0.30 +0.8 434,590 + ABIE53_004261 0.35 +0.0 434,590 + ABIE53_004261 0.35 -0.6 434,591 - ABIE53_004261 0.35 -0.8 434,649 - ABIE53_004261 0.40 +0.2 434,649 - ABIE53_004261 0.40 +0.3 434,649 - ABIE53_004261 0.40 +0.6
Or see this region's nucleotide sequence