Strain Fitness in Rahnella sp. WP5 around EX31_RS13070

Experiment: L-Glutamine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13060 and EX31_RS13065 are separated by 42 nucleotidesEX31_RS13065 and EX31_RS13070 are separated by 1 nucleotidesEX31_RS13070 and EX31_RS13075 are separated by 190 nucleotides EX31_RS13060: EX31_RS13060 - flavodoxin, at 39,105 to 39,554 _RS13060 EX31_RS13065: EX31_RS13065 - tRNA pseudouridine(65) synthase TruC, at 39,597 to 40,376 _RS13065 EX31_RS13070: EX31_RS13070 - YqcC family protein, at 40,378 to 40,692 _RS13070 EX31_RS13075: EX31_RS13075 - MFS transporter, at 40,883 to 42,121 _RS13075 Position (kb) 40 41Strain fitness (log2 ratio) -2 -1 0 1 2 3at 39.415 kb on + strand, within EX31_RS13060at 39.418 kb on + strand, within EX31_RS13060at 39.419 kb on - strand, within EX31_RS13060at 39.520 kb on + strandat 39.520 kb on + strandat 39.521 kb on - strandat 39.521 kb on - strandat 39.523 kb on - strandat 39.528 kb on - strandat 39.528 kb on - strandat 39.580 kb on + strandat 39.580 kb on + strandat 39.580 kb on + strandat 39.580 kb on + strandat 39.611 kb on + strandat 39.761 kb on + strand, within EX31_RS13065at 39.761 kb on + strand, within EX31_RS13065at 39.761 kb on + strand, within EX31_RS13065at 39.762 kb on - strand, within EX31_RS13065at 39.762 kb on - strand, within EX31_RS13065at 39.762 kb on - strand, within EX31_RS13065at 39.762 kb on - strand, within EX31_RS13065at 39.762 kb on - strand, within EX31_RS13065at 39.826 kb on - strand, within EX31_RS13065at 39.826 kb on - strand, within EX31_RS13065at 39.826 kb on - strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.897 kb on - strand, within EX31_RS13065at 39.897 kb on - strand, within EX31_RS13065at 39.929 kb on + strand, within EX31_RS13065at 39.929 kb on + strand, within EX31_RS13065at 39.929 kb on + strand, within EX31_RS13065at 39.930 kb on - strand, within EX31_RS13065at 39.930 kb on - strand, within EX31_RS13065at 39.941 kb on + strand, within EX31_RS13065at 39.941 kb on + strand, within EX31_RS13065at 39.941 kb on + strand, within EX31_RS13065at 39.946 kb on + strand, within EX31_RS13065at 40.019 kb on + strand, within EX31_RS13065at 40.073 kb on - strand, within EX31_RS13065at 40.100 kb on - strand, within EX31_RS13065at 40.120 kb on + strand, within EX31_RS13065at 40.120 kb on + strand, within EX31_RS13065at 40.120 kb on + strand, within EX31_RS13065at 40.120 kb on + strand, within EX31_RS13065at 40.120 kb on + strand, within EX31_RS13065at 40.120 kb on + strand, within EX31_RS13065at 40.120 kb on + strand, within EX31_RS13065at 40.120 kb on + strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.121 kb on - strand, within EX31_RS13065at 40.161 kb on + strand, within EX31_RS13065at 40.162 kb on - strand, within EX31_RS13065at 40.162 kb on - strand, within EX31_RS13065at 40.232 kb on + strand, within EX31_RS13065at 40.319 kb on + strandat 40.319 kb on + strandat 40.331 kb on + strandat 40.332 kb on - strandat 40.335 kb on + strandat 40.335 kb on + strandat 40.387 kb on + strandat 40.387 kb on + strandat 40.387 kb on + strandat 40.387 kb on + strandat 40.387 kb on + strandat 40.387 kb on + strandat 40.387 kb on + strandat 40.388 kb on - strandat 40.388 kb on - strandat 40.388 kb on - strandat 40.388 kb on - strandat 40.388 kb on - strandat 40.388 kb on - strandat 40.388 kb on - strandat 40.388 kb on - strandat 40.388 kb on - strandat 40.388 kb on - strandat 40.388 kb on - strandat 40.388 kb on - strandat 40.460 kb on + strand, within EX31_RS13070at 40.471 kb on - strand, within EX31_RS13070at 40.514 kb on + strand, within EX31_RS13070at 40.514 kb on + strand, within EX31_RS13070at 40.514 kb on + strand, within EX31_RS13070at 40.514 kb on + strand, within EX31_RS13070at 40.514 kb on + strand, within EX31_RS13070at 40.514 kb on + strand, within EX31_RS13070at 40.514 kb on + strand, within EX31_RS13070at 40.515 kb on - strand, within EX31_RS13070at 40.515 kb on - strand, within EX31_RS13070at 40.515 kb on - strand, within EX31_RS13070at 40.515 kb on - strand, within EX31_RS13070at 40.515 kb on - strand, within EX31_RS13070at 40.518 kb on + strand, within EX31_RS13070at 40.519 kb on - strand, within EX31_RS13070at 40.519 kb on - strand, within EX31_RS13070at 40.519 kb on - strand, within EX31_RS13070at 40.684 kb on + strandat 40.685 kb on - strandat 40.685 kb on - strandat 40.685 kb on - strandat 40.685 kb on - strandat 40.687 kb on - strandat 40.748 kb on + strandat 40.749 kb on - strandat 40.749 kb on - strandat 40.785 kb on + strandat 40.786 kb on - strandat 40.794 kb on + strandat 40.794 kb on + strandat 40.794 kb on + strandat 40.794 kb on + strandat 40.795 kb on - strandat 40.795 kb on - strandat 40.795 kb on - strandat 40.798 kb on + strandat 40.799 kb on - strandat 40.808 kb on + strandat 40.808 kb on + strandat 40.809 kb on - strandat 40.809 kb on - strandat 40.809 kb on - strandat 40.809 kb on - strandat 40.809 kb on - strandat 40.828 kb on + strandat 40.851 kb on - strandat 40.851 kb on - strandat 40.953 kb on - strandat 40.975 kb on - strandat 41.002 kb on + strandat 41.006 kb on - strandat 41.189 kb on + strand, within EX31_RS13075at 41.190 kb on - strand, within EX31_RS13075at 41.199 kb on + strand, within EX31_RS13075at 41.199 kb on + strand, within EX31_RS13075at 41.199 kb on + strand, within EX31_RS13075at 41.199 kb on + strand, within EX31_RS13075at 41.199 kb on + strand, within EX31_RS13075at 41.200 kb on - strand, within EX31_RS13075at 41.200 kb on - strand, within EX31_RS13075at 41.200 kb on - strand, within EX31_RS13075at 41.207 kb on + strand, within EX31_RS13075at 41.207 kb on + strand, within EX31_RS13075at 41.208 kb on - strand, within EX31_RS13075at 41.309 kb on + strand, within EX31_RS13075at 41.309 kb on + strand, within EX31_RS13075at 41.309 kb on + strand, within EX31_RS13075at 41.309 kb on + strand, within EX31_RS13075at 41.310 kb on - strand, within EX31_RS13075at 41.310 kb on - strand, within EX31_RS13075at 41.310 kb on - strand, within EX31_RS13075at 41.310 kb on - strand, within EX31_RS13075at 41.310 kb on - strand, within EX31_RS13075at 41.341 kb on - strand, within EX31_RS13075at 41.393 kb on - strand, within EX31_RS13075at 41.488 kb on + strand, within EX31_RS13075at 41.489 kb on - strand, within EX31_RS13075at 41.516 kb on - strand, within EX31_RS13075at 41.516 kb on - strand, within EX31_RS13075at 41.521 kb on - strand, within EX31_RS13075at 41.521 kb on - strand, within EX31_RS13075at 41.594 kb on + strand, within EX31_RS13075at 41.597 kb on + strand, within EX31_RS13075at 41.624 kb on + strand, within EX31_RS13075at 41.624 kb on + strand, within EX31_RS13075at 41.625 kb on - strand, within EX31_RS13075at 41.625 kb on - strand, within EX31_RS13075at 41.625 kb on - strand, within EX31_RS13075at 41.625 kb on - strand, within EX31_RS13075at 41.692 kb on + strand, within EX31_RS13075at 41.692 kb on + strand, within EX31_RS13075

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
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39,415 + EX31_RS13060 0.69 -0.5
39,418 + EX31_RS13060 0.70 -0.4
39,419 - EX31_RS13060 0.70 +0.1
39,520 + -1.6
39,520 + +1.5
39,521 - -0.1
39,521 - +0.9
39,523 - +1.2
39,528 - +0.4
39,528 - -0.4
39,580 + +0.4
39,580 + +0.4
39,580 + -2.7
39,580 + -0.1
39,611 + -1.5
39,761 + EX31_RS13065 0.21 -1.4
39,761 + EX31_RS13065 0.21 -1.0
39,761 + EX31_RS13065 0.21 -0.8
39,762 - EX31_RS13065 0.21 -1.3
39,762 - EX31_RS13065 0.21 -0.4
39,762 - EX31_RS13065 0.21 -0.1
39,762 - EX31_RS13065 0.21 -0.2
39,762 - EX31_RS13065 0.21 +0.6
39,826 - EX31_RS13065 0.29 +1.2
39,826 - EX31_RS13065 0.29 +1.0
39,826 - EX31_RS13065 0.29 -0.5
39,875 + EX31_RS13065 0.36 +0.0
39,875 + EX31_RS13065 0.36 -0.1
39,875 + EX31_RS13065 0.36 -0.9
39,875 + EX31_RS13065 0.36 +0.7
39,875 + EX31_RS13065 0.36 +0.1
39,875 + EX31_RS13065 0.36 -0.0
39,875 + EX31_RS13065 0.36 +0.6
39,875 + EX31_RS13065 0.36 -0.3
39,875 + EX31_RS13065 0.36 -0.0
39,875 + EX31_RS13065 0.36 -0.5
39,876 - EX31_RS13065 0.36 -1.2
39,876 - EX31_RS13065 0.36 +1.0
39,876 - EX31_RS13065 0.36 -0.8
39,876 - EX31_RS13065 0.36 -0.1
39,876 - EX31_RS13065 0.36 +0.6
39,876 - EX31_RS13065 0.36 +0.6
39,876 - EX31_RS13065 0.36 +1.2
39,876 - EX31_RS13065 0.36 -0.9
39,876 - EX31_RS13065 0.36 -0.5
39,876 - EX31_RS13065 0.36 -0.1
39,876 - EX31_RS13065 0.36 +0.2
39,876 - EX31_RS13065 0.36 -0.0
39,876 - EX31_RS13065 0.36 -0.1
39,876 - EX31_RS13065 0.36 +0.9
39,876 - EX31_RS13065 0.36 -0.8
39,897 - EX31_RS13065 0.38 +0.5
39,897 - EX31_RS13065 0.38 -0.0
39,929 + EX31_RS13065 0.43 -0.7
39,929 + EX31_RS13065 0.43 +0.8
39,929 + EX31_RS13065 0.43 -0.5
39,930 - EX31_RS13065 0.43 -0.5
39,930 - EX31_RS13065 0.43 +0.3
39,941 + EX31_RS13065 0.44 -0.3
39,941 + EX31_RS13065 0.44 -0.9
39,941 + EX31_RS13065 0.44 -0.8
39,946 + EX31_RS13065 0.45 -0.1
40,019 + EX31_RS13065 0.54 +1.1
40,073 - EX31_RS13065 0.61 -1.3
40,100 - EX31_RS13065 0.64 +0.5
40,120 + EX31_RS13065 0.67 -0.4
40,120 + EX31_RS13065 0.67 -0.6
40,120 + EX31_RS13065 0.67 -1.0
40,120 + EX31_RS13065 0.67 +1.1
40,120 + EX31_RS13065 0.67 +1.2
40,120 + EX31_RS13065 0.67 +0.7
40,120 + EX31_RS13065 0.67 +0.1
40,120 + EX31_RS13065 0.67 -0.2
40,121 - EX31_RS13065 0.67 +0.6
40,121 - EX31_RS13065 0.67 +0.1
40,121 - EX31_RS13065 0.67 +0.0
40,121 - EX31_RS13065 0.67 -0.3
40,121 - EX31_RS13065 0.67 -1.0
40,121 - EX31_RS13065 0.67 -0.2
40,121 - EX31_RS13065 0.67 +1.0
40,121 - EX31_RS13065 0.67 +0.2
40,121 - EX31_RS13065 0.67 +0.5
40,121 - EX31_RS13065 0.67 +0.7
40,121 - EX31_RS13065 0.67 +0.4
40,121 - EX31_RS13065 0.67 +0.4
40,121 - EX31_RS13065 0.67 +0.4
40,121 - EX31_RS13065 0.67 +0.1
40,121 - EX31_RS13065 0.67 +0.1
40,121 - EX31_RS13065 0.67 -1.5
40,121 - EX31_RS13065 0.67 -0.1
40,121 - EX31_RS13065 0.67 -0.0
40,121 - EX31_RS13065 0.67 -0.4
40,161 + EX31_RS13065 0.72 +0.4
40,162 - EX31_RS13065 0.72 +0.1
40,162 - EX31_RS13065 0.72 +0.3
40,232 + EX31_RS13065 0.81 +0.6
40,319 + -0.1
40,319 + -0.8
40,331 + +0.2
40,332 - +0.5
40,335 + -0.1
40,335 + +0.1
40,387 + -0.3
40,387 + -0.2
40,387 + +0.4
40,387 + -0.9
40,387 + +0.4
40,387 + -1.2
40,387 + -0.4
40,388 - +0.3
40,388 - -0.1
40,388 - -1.0
40,388 - -1.0
40,388 - +0.2
40,388 - -0.6
40,388 - -0.2
40,388 - -1.8
40,388 - +1.6
40,388 - +0.5
40,388 - +0.2
40,388 - +0.5
40,460 + EX31_RS13070 0.26 +0.3
40,471 - EX31_RS13070 0.30 +0.2
40,514 + EX31_RS13070 0.43 -0.6
40,514 + EX31_RS13070 0.43 +3.5
40,514 + EX31_RS13070 0.43 -0.4
40,514 + EX31_RS13070 0.43 +0.8
40,514 + EX31_RS13070 0.43 -0.2
40,514 + EX31_RS13070 0.43 +0.5
40,514 + EX31_RS13070 0.43 +0.9
40,515 - EX31_RS13070 0.43 +1.0
40,515 - EX31_RS13070 0.43 +0.7
40,515 - EX31_RS13070 0.43 -2.7
40,515 - EX31_RS13070 0.43 +0.9
40,515 - EX31_RS13070 0.43 +0.2
40,518 + EX31_RS13070 0.44 -0.1
40,519 - EX31_RS13070 0.45 +0.1
40,519 - EX31_RS13070 0.45 -0.1
40,519 - EX31_RS13070 0.45 -0.6
40,684 + +1.5
40,685 - +1.6
40,685 - -0.6
40,685 - +0.9
40,685 - +0.6
40,687 - +0.1
40,748 + -0.4
40,749 - +0.2
40,749 - +1.0
40,785 + -0.4
40,786 - +0.2
40,794 + +1.3
40,794 + +1.0
40,794 + -0.7
40,794 + +0.8
40,795 - +1.0
40,795 - +0.6
40,795 - -0.8
40,798 + +0.4
40,799 - -0.2
40,808 + +0.1
40,808 + -0.1
40,809 - +0.2
40,809 - -0.1
40,809 - +0.5
40,809 - -0.5
40,809 - -0.4
40,828 + +0.5
40,851 - +0.3
40,851 - -0.3
40,953 - -1.6
40,975 - +0.1
41,002 + -0.2
41,006 - -0.0
41,189 + EX31_RS13075 0.25 -1.4
41,190 - EX31_RS13075 0.25 +0.2
41,199 + EX31_RS13075 0.26 -0.7
41,199 + EX31_RS13075 0.26 -0.4
41,199 + EX31_RS13075 0.26 -0.6
41,199 + EX31_RS13075 0.26 +0.1
41,199 + EX31_RS13075 0.26 -0.0
41,200 - EX31_RS13075 0.26 +0.7
41,200 - EX31_RS13075 0.26 -0.9
41,200 - EX31_RS13075 0.26 -1.3
41,207 + EX31_RS13075 0.26 +0.9
41,207 + EX31_RS13075 0.26 -0.4
41,208 - EX31_RS13075 0.26 -0.6
41,309 + EX31_RS13075 0.34 -0.5
41,309 + EX31_RS13075 0.34 +0.4
41,309 + EX31_RS13075 0.34 -0.2
41,309 + EX31_RS13075 0.34 +0.5
41,310 - EX31_RS13075 0.34 -0.6
41,310 - EX31_RS13075 0.34 -0.2
41,310 - EX31_RS13075 0.34 +1.5
41,310 - EX31_RS13075 0.34 -0.2
41,310 - EX31_RS13075 0.34 -0.0
41,341 - EX31_RS13075 0.37 -2.0
41,393 - EX31_RS13075 0.41 +0.7
41,488 + EX31_RS13075 0.49 -0.8
41,489 - EX31_RS13075 0.49 +0.0
41,516 - EX31_RS13075 0.51 +0.5
41,516 - EX31_RS13075 0.51 +0.8
41,521 - EX31_RS13075 0.51 +0.5
41,521 - EX31_RS13075 0.51 -1.3
41,594 + EX31_RS13075 0.57 +0.5
41,597 + EX31_RS13075 0.58 +0.4
41,624 + EX31_RS13075 0.60 -2.7
41,624 + EX31_RS13075 0.60 -0.2
41,625 - EX31_RS13075 0.60 -0.8
41,625 - EX31_RS13075 0.60 -1.1
41,625 - EX31_RS13075 0.60 +0.2
41,625 - EX31_RS13075 0.60 -1.6
41,692 + EX31_RS13075 0.65 +0.2
41,692 + EX31_RS13075 0.65 -0.1

Or see this region's nucleotide sequence