Strain Fitness in Rahnella sp. WP5 around EX31_RS12505

Experiment: L-Glutamine (N); ShewMM media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS12495 and EX31_RS12500 are separated by 334 nucleotidesEX31_RS12500 and EX31_RS12505 are separated by 3 nucleotidesEX31_RS12505 and EX31_RS12510 are separated by 162 nucleotides EX31_RS12495: EX31_RS12495 - 30S ribosomal protein S9, at 164,857 to 165,249 _RS12495 EX31_RS12500: EX31_RS12500 - stringent starvation protein A, at 165,584 to 166,225 _RS12500 EX31_RS12505: EX31_RS12505 - ClpXP protease specificity-enhancing factor, at 166,229 to 166,723 _RS12505 EX31_RS12510: EX31_RS12510 - FAD-dependent oxidoreductase, at 166,886 to 168,304 _RS12510 Position (kb) 166 167Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 165.261 kb on + strandat 165.342 kb on + strandat 165.343 kb on - strandat 165.429 kb on + strandat 165.510 kb on + strandat 165.558 kb on + strandat 165.558 kb on + strandat 165.563 kb on + strandat 165.567 kb on + strandat 165.567 kb on + strandat 165.657 kb on + strand, within EX31_RS12500at 165.661 kb on + strand, within EX31_RS12500at 165.661 kb on + strand, within EX31_RS12500at 165.661 kb on + strand, within EX31_RS12500at 165.661 kb on + strand, within EX31_RS12500at 165.661 kb on + strand, within EX31_RS12500at 165.661 kb on + strand, within EX31_RS12500at 165.661 kb on + strand, within EX31_RS12500at 165.666 kb on + strand, within EX31_RS12500at 165.733 kb on + strand, within EX31_RS12500at 165.733 kb on + strand, within EX31_RS12500at 165.733 kb on + strand, within EX31_RS12500at 165.749 kb on + strand, within EX31_RS12500at 165.750 kb on - strand, within EX31_RS12500at 165.759 kb on + strand, within EX31_RS12500at 165.759 kb on + strand, within EX31_RS12500at 165.815 kb on + strand, within EX31_RS12500at 165.815 kb on + strand, within EX31_RS12500at 165.914 kb on + strand, within EX31_RS12500at 165.970 kb on + strand, within EX31_RS12500at 165.970 kb on + strand, within EX31_RS12500at 165.970 kb on + strand, within EX31_RS12500at 165.970 kb on + strand, within EX31_RS12500at 166.016 kb on + strand, within EX31_RS12500at 166.016 kb on + strand, within EX31_RS12500at 166.016 kb on + strand, within EX31_RS12500at 166.016 kb on + strand, within EX31_RS12500at 166.016 kb on + strand, within EX31_RS12500at 166.016 kb on + strand, within EX31_RS12500at 166.016 kb on + strand, within EX31_RS12500at 166.016 kb on + strand, within EX31_RS12500at 166.016 kb on + strand, within EX31_RS12500at 166.061 kb on + strand, within EX31_RS12500at 166.061 kb on + strand, within EX31_RS12500at 166.139 kb on + strand, within EX31_RS12500at 166.139 kb on + strand, within EX31_RS12500at 166.139 kb on + strand, within EX31_RS12500at 166.139 kb on + strand, within EX31_RS12500at 166.139 kb on + strand, within EX31_RS12500at 166.139 kb on + strand, within EX31_RS12500at 166.223 kb on + strandat 166.228 kb on + strandat 166.263 kb on - strandat 166.280 kb on + strand, within EX31_RS12505at 166.437 kb on + strand, within EX31_RS12505at 166.437 kb on + strand, within EX31_RS12505at 166.437 kb on + strand, within EX31_RS12505at 166.438 kb on - strand, within EX31_RS12505at 166.444 kb on + strand, within EX31_RS12505at 166.445 kb on - strand, within EX31_RS12505at 166.464 kb on + strand, within EX31_RS12505at 166.471 kb on + strand, within EX31_RS12505at 166.508 kb on + strand, within EX31_RS12505at 166.508 kb on + strand, within EX31_RS12505at 166.508 kb on + strand, within EX31_RS12505at 166.508 kb on + strand, within EX31_RS12505at 166.508 kb on + strand, within EX31_RS12505at 166.509 kb on - strand, within EX31_RS12505at 166.509 kb on - strand, within EX31_RS12505at 166.509 kb on - strand, within EX31_RS12505at 166.557 kb on - strand, within EX31_RS12505at 166.721 kb on + strandat 166.721 kb on + strandat 166.721 kb on + strandat 166.722 kb on - strandat 166.750 kb on + strandat 166.750 kb on + strandat 166.765 kb on + strandat 166.765 kb on + strandat 166.765 kb on + strandat 166.765 kb on + strandat 166.765 kb on + strandat 166.765 kb on + strandat 166.765 kb on + strandat 166.765 kb on + strandat 166.765 kb on + strandat 166.765 kb on + strandat 166.766 kb on - strandat 166.766 kb on - strandat 166.766 kb on - strandat 166.787 kb on + strandat 166.787 kb on + strandat 166.787 kb on + strandat 166.788 kb on - strandat 166.788 kb on - strandat 166.788 kb on - strandat 166.791 kb on + strandat 166.792 kb on - strandat 166.792 kb on - strandat 166.827 kb on - strandat 166.827 kb on - strandat 167.352 kb on + strand, within EX31_RS12510at 167.353 kb on - strand, within EX31_RS12510at 167.353 kb on - strand, within EX31_RS12510at 167.392 kb on + strand, within EX31_RS12510at 167.393 kb on - strand, within EX31_RS12510at 167.393 kb on - strand, within EX31_RS12510at 167.393 kb on - strand, within EX31_RS12510at 167.460 kb on + strand, within EX31_RS12510at 167.460 kb on + strand, within EX31_RS12510at 167.460 kb on + strand, within EX31_RS12510at 167.460 kb on + strand, within EX31_RS12510at 167.460 kb on + strand, within EX31_RS12510at 167.460 kb on + strand, within EX31_RS12510at 167.460 kb on + strand, within EX31_RS12510at 167.460 kb on + strand, within EX31_RS12510at 167.460 kb on + strand, within EX31_RS12510at 167.461 kb on - strand, within EX31_RS12510at 167.461 kb on - strand, within EX31_RS12510at 167.461 kb on - strand, within EX31_RS12510at 167.485 kb on - strand, within EX31_RS12510at 167.532 kb on + strand, within EX31_RS12510at 167.532 kb on + strand, within EX31_RS12510at 167.533 kb on - strand, within EX31_RS12510at 167.533 kb on - strand, within EX31_RS12510at 167.580 kb on + strand, within EX31_RS12510at 167.580 kb on + strand, within EX31_RS12510at 167.580 kb on + strand, within EX31_RS12510at 167.580 kb on + strand, within EX31_RS12510at 167.580 kb on + strand, within EX31_RS12510at 167.580 kb on + strand, within EX31_RS12510at 167.580 kb on + strand, within EX31_RS12510at 167.580 kb on + strand, within EX31_RS12510at 167.580 kb on + strand, within EX31_RS12510at 167.601 kb on - strand, within EX31_RS12510at 167.601 kb on - strand, within EX31_RS12510at 167.601 kb on - strand, within EX31_RS12510at 167.601 kb on - strand, within EX31_RS12510at 167.601 kb on - strand, within EX31_RS12510at 167.610 kb on + strand, within EX31_RS12510at 167.611 kb on - strand, within EX31_RS12510at 167.632 kb on + strand, within EX31_RS12510at 167.633 kb on - strand, within EX31_RS12510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
remove
165,261 + +1.6
165,342 + +0.2
165,343 - -1.3
165,429 + -1.9
165,510 + -1.8
165,558 + -0.8
165,558 + +0.4
165,563 + -0.9
165,567 + +0.4
165,567 + +0.2
165,657 + EX31_RS12500 0.11 -2.5
165,661 + EX31_RS12500 0.12 -0.1
165,661 + EX31_RS12500 0.12 -0.8
165,661 + EX31_RS12500 0.12 -1.2
165,661 + EX31_RS12500 0.12 -0.9
165,661 + EX31_RS12500 0.12 -1.1
165,661 + EX31_RS12500 0.12 -1.3
165,661 + EX31_RS12500 0.12 -0.5
165,666 + EX31_RS12500 0.13 -0.6
165,733 + EX31_RS12500 0.23 -1.6
165,733 + EX31_RS12500 0.23 -1.1
165,733 + EX31_RS12500 0.23 -1.1
165,749 + EX31_RS12500 0.26 -1.6
165,750 - EX31_RS12500 0.26 -0.3
165,759 + EX31_RS12500 0.27 -1.9
165,759 + EX31_RS12500 0.27 -1.2
165,815 + EX31_RS12500 0.36 -2.0
165,815 + EX31_RS12500 0.36 -1.1
165,914 + EX31_RS12500 0.51 -0.1
165,970 + EX31_RS12500 0.60 -1.7
165,970 + EX31_RS12500 0.60 -0.9
165,970 + EX31_RS12500 0.60 -2.8
165,970 + EX31_RS12500 0.60 -1.7
166,016 + EX31_RS12500 0.67 -1.2
166,016 + EX31_RS12500 0.67 -0.3
166,016 + EX31_RS12500 0.67 -1.4
166,016 + EX31_RS12500 0.67 +0.6
166,016 + EX31_RS12500 0.67 -2.2
166,016 + EX31_RS12500 0.67 -2.4
166,016 + EX31_RS12500 0.67 -1.0
166,016 + EX31_RS12500 0.67 +0.2
166,016 + EX31_RS12500 0.67 -0.1
166,061 + EX31_RS12500 0.74 -1.0
166,061 + EX31_RS12500 0.74 -2.8
166,139 + EX31_RS12500 0.86 -1.1
166,139 + EX31_RS12500 0.86 -0.9
166,139 + EX31_RS12500 0.86 -1.2
166,139 + EX31_RS12500 0.86 -1.7
166,139 + EX31_RS12500 0.86 -1.1
166,139 + EX31_RS12500 0.86 -0.7
166,223 + -1.3
166,228 + +0.6
166,263 - +0.2
166,280 + EX31_RS12505 0.10 +0.4
166,437 + EX31_RS12505 0.42 -0.9
166,437 + EX31_RS12505 0.42 -0.0
166,437 + EX31_RS12505 0.42 -0.3
166,438 - EX31_RS12505 0.42 +0.5
166,444 + EX31_RS12505 0.43 -0.3
166,445 - EX31_RS12505 0.44 +0.6
166,464 + EX31_RS12505 0.47 -0.6
166,471 + EX31_RS12505 0.49 -0.6
166,508 + EX31_RS12505 0.56 -0.7
166,508 + EX31_RS12505 0.56 -0.2
166,508 + EX31_RS12505 0.56 -0.3
166,508 + EX31_RS12505 0.56 -0.3
166,508 + EX31_RS12505 0.56 -0.9
166,509 - EX31_RS12505 0.57 -0.8
166,509 - EX31_RS12505 0.57 +0.7
166,509 - EX31_RS12505 0.57 -0.7
166,557 - EX31_RS12505 0.66 -0.3
166,721 + -0.8
166,721 + -0.7
166,721 + -0.6
166,722 - +0.5
166,750 + +0.0
166,750 + -1.2
166,765 + +0.1
166,765 + -0.5
166,765 + -0.2
166,765 + +0.7
166,765 + +0.2
166,765 + +1.1
166,765 + +0.1
166,765 + -0.2
166,765 + +0.2
166,765 + -0.8
166,766 - +1.5
166,766 - -0.2
166,766 - -1.3
166,787 + +0.4
166,787 + -0.3
166,787 + -0.4
166,788 - -0.4
166,788 - +1.6
166,788 - +0.5
166,791 + -0.2
166,792 - -0.5
166,792 - +0.1
166,827 - +0.9
166,827 - +0.2
167,352 + EX31_RS12510 0.33 -1.5
167,353 - EX31_RS12510 0.33 -2.9
167,353 - EX31_RS12510 0.33 -3.9
167,392 + EX31_RS12510 0.36 -3.1
167,393 - EX31_RS12510 0.36 -2.0
167,393 - EX31_RS12510 0.36 -1.2
167,393 - EX31_RS12510 0.36 -3.4
167,460 + EX31_RS12510 0.40 -3.6
167,460 + EX31_RS12510 0.40 -4.6
167,460 + EX31_RS12510 0.40 -3.5
167,460 + EX31_RS12510 0.40 -1.5
167,460 + EX31_RS12510 0.40 -4.6
167,460 + EX31_RS12510 0.40 -3.0
167,460 + EX31_RS12510 0.40 -3.6
167,460 + EX31_RS12510 0.40 -3.2
167,460 + EX31_RS12510 0.40 -3.4
167,461 - EX31_RS12510 0.41 -2.1
167,461 - EX31_RS12510 0.41 -3.1
167,461 - EX31_RS12510 0.41 -2.8
167,485 - EX31_RS12510 0.42 +0.3
167,532 + EX31_RS12510 0.46 -2.3
167,532 + EX31_RS12510 0.46 -3.5
167,533 - EX31_RS12510 0.46 -2.9
167,533 - EX31_RS12510 0.46 -2.4
167,580 + EX31_RS12510 0.49 -3.6
167,580 + EX31_RS12510 0.49 -1.9
167,580 + EX31_RS12510 0.49 -3.0
167,580 + EX31_RS12510 0.49 -4.1
167,580 + EX31_RS12510 0.49 -4.8
167,580 + EX31_RS12510 0.49 -3.9
167,580 + EX31_RS12510 0.49 -1.1
167,580 + EX31_RS12510 0.49 -3.9
167,580 + EX31_RS12510 0.49 -2.7
167,601 - EX31_RS12510 0.50 -0.5
167,601 - EX31_RS12510 0.50 -1.6
167,601 - EX31_RS12510 0.50 -3.8
167,601 - EX31_RS12510 0.50 -2.5
167,601 - EX31_RS12510 0.50 -1.0
167,610 + EX31_RS12510 0.51 -2.8
167,611 - EX31_RS12510 0.51 -1.7
167,632 + EX31_RS12510 0.53 -1.8
167,633 - EX31_RS12510 0.53 -4.3

Or see this region's nucleotide sequence