Strain Fitness in Rahnella sp. WP5 around EX31_RS11615

Experiment: L-Glutamine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11605 and EX31_RS11610 are separated by 103 nucleotidesEX31_RS11610 and EX31_RS11615 are separated by 92 nucleotidesEX31_RS11615 and EX31_RS11620 are separated by 20 nucleotidesEX31_RS11620 and EX31_RS11625 overlap by 1 nucleotides EX31_RS11605: EX31_RS11605 - helix-turn-helix transcriptional regulator, at 262,567 to 263,013 _RS11605 EX31_RS11610: EX31_RS11610 - SDR family oxidoreductase, at 263,117 to 263,911 _RS11610 EX31_RS11615: EX31_RS11615 - fumarylacetoacetate hydrolase family protein, at 264,004 to 264,693 _RS11615 EX31_RS11620: EX31_RS11620 - hypothetical protein, at 264,714 to 265,520 _RS11620 EX31_RS11625: EX31_RS11625 - hypothetical protein, at 265,520 to 265,717 _RS11625 Position (kb) 264 265Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 263.113 kb on + strandat 263.114 kb on - strandat 263.114 kb on - strandat 263.114 kb on - strandat 263.114 kb on - strandat 263.114 kb on - strandat 263.114 kb on - strandat 263.114 kb on - strandat 263.114 kb on - strandat 263.114 kb on - strandat 263.116 kb on + strandat 263.116 kb on + strandat 263.116 kb on + strandat 263.117 kb on - strandat 263.125 kb on + strandat 263.125 kb on + strandat 263.186 kb on + strandat 263.187 kb on - strandat 263.187 kb on - strandat 263.187 kb on - strandat 263.187 kb on - strandat 263.187 kb on - strandat 263.220 kb on + strand, within EX31_RS11610at 263.220 kb on + strand, within EX31_RS11610at 263.455 kb on + strand, within EX31_RS11610at 263.519 kb on - strand, within EX31_RS11610at 263.519 kb on - strand, within EX31_RS11610at 263.536 kb on + strand, within EX31_RS11610at 263.537 kb on - strand, within EX31_RS11610at 263.537 kb on - strand, within EX31_RS11610at 263.583 kb on + strand, within EX31_RS11610at 263.584 kb on - strand, within EX31_RS11610at 263.585 kb on + strand, within EX31_RS11610at 263.585 kb on + strand, within EX31_RS11610at 263.657 kb on + strand, within EX31_RS11610at 263.657 kb on + strand, within EX31_RS11610at 263.658 kb on - strand, within EX31_RS11610at 263.900 kb on + strandat 263.936 kb on - strandat 263.936 kb on - strandat 263.970 kb on + strandat 263.971 kb on - strandat 263.971 kb on - strandat 263.971 kb on - strandat 263.975 kb on + strandat 263.976 kb on - strandat 264.013 kb on + strandat 264.013 kb on + strandat 264.017 kb on + strandat 264.017 kb on + strandat 264.018 kb on - strandat 264.018 kb on - strandat 264.018 kb on - strandat 264.018 kb on - strandat 264.089 kb on - strand, within EX31_RS11615at 264.106 kb on + strand, within EX31_RS11615at 264.107 kb on - strand, within EX31_RS11615at 264.238 kb on + strand, within EX31_RS11615at 264.282 kb on + strand, within EX31_RS11615at 264.282 kb on + strand, within EX31_RS11615at 264.319 kb on + strand, within EX31_RS11615at 264.333 kb on - strand, within EX31_RS11615at 264.333 kb on - strand, within EX31_RS11615at 264.339 kb on - strand, within EX31_RS11615at 264.537 kb on - strand, within EX31_RS11615at 264.553 kb on + strand, within EX31_RS11615at 264.553 kb on + strand, within EX31_RS11615at 264.554 kb on - strand, within EX31_RS11615at 264.554 kb on - strand, within EX31_RS11615at 264.595 kb on + strand, within EX31_RS11615at 264.595 kb on + strand, within EX31_RS11615at 264.596 kb on - strand, within EX31_RS11615at 264.596 kb on - strand, within EX31_RS11615at 264.596 kb on - strand, within EX31_RS11615at 264.691 kb on + strandat 264.767 kb on + strandat 264.767 kb on + strandat 264.831 kb on + strand, within EX31_RS11620at 264.832 kb on - strand, within EX31_RS11620at 264.842 kb on + strand, within EX31_RS11620at 264.843 kb on - strand, within EX31_RS11620at 264.899 kb on - strand, within EX31_RS11620at 264.902 kb on - strand, within EX31_RS11620at 264.910 kb on + strand, within EX31_RS11620at 264.911 kb on - strand, within EX31_RS11620at 264.911 kb on - strand, within EX31_RS11620at 264.915 kb on - strand, within EX31_RS11620at 264.915 kb on - strand, within EX31_RS11620at 264.915 kb on - strand, within EX31_RS11620at 265.031 kb on - strand, within EX31_RS11620at 265.048 kb on - strand, within EX31_RS11620at 265.048 kb on - strand, within EX31_RS11620at 265.060 kb on - strand, within EX31_RS11620at 265.080 kb on - strand, within EX31_RS11620at 265.087 kb on + strand, within EX31_RS11620at 265.087 kb on + strand, within EX31_RS11620at 265.087 kb on + strand, within EX31_RS11620at 265.087 kb on + strand, within EX31_RS11620at 265.088 kb on - strand, within EX31_RS11620at 265.088 kb on - strand, within EX31_RS11620at 265.088 kb on - strand, within EX31_RS11620at 265.088 kb on - strand, within EX31_RS11620at 265.129 kb on + strand, within EX31_RS11620at 265.129 kb on + strand, within EX31_RS11620at 265.129 kb on + strand, within EX31_RS11620at 265.130 kb on - strand, within EX31_RS11620at 265.152 kb on - strand, within EX31_RS11620at 265.152 kb on - strand, within EX31_RS11620at 265.154 kb on + strand, within EX31_RS11620at 265.179 kb on - strand, within EX31_RS11620at 265.217 kb on + strand, within EX31_RS11620at 265.217 kb on + strand, within EX31_RS11620at 265.217 kb on + strand, within EX31_RS11620at 265.217 kb on + strand, within EX31_RS11620at 265.218 kb on - strand, within EX31_RS11620at 265.218 kb on - strand, within EX31_RS11620at 265.218 kb on - strand, within EX31_RS11620at 265.218 kb on - strand, within EX31_RS11620at 265.273 kb on + strand, within EX31_RS11620at 265.348 kb on + strand, within EX31_RS11620at 265.349 kb on - strand, within EX31_RS11620at 265.350 kb on + strand, within EX31_RS11620at 265.351 kb on - strand, within EX31_RS11620at 265.351 kb on - strand, within EX31_RS11620at 265.351 kb on - strand, within EX31_RS11620at 265.351 kb on - strand, within EX31_RS11620at 265.351 kb on - strand, within EX31_RS11620at 265.351 kb on - strand, within EX31_RS11620at 265.359 kb on + strand, within EX31_RS11620at 265.359 kb on + strand, within EX31_RS11620at 265.360 kb on - strand, within EX31_RS11620at 265.360 kb on - strand, within EX31_RS11620at 265.388 kb on + strand, within EX31_RS11620at 265.388 kb on + strand, within EX31_RS11620at 265.397 kb on - strand, within EX31_RS11620at 265.397 kb on - strand, within EX31_RS11620at 265.414 kb on + strand, within EX31_RS11620at 265.440 kb on - strandat 265.440 kb on - strandat 265.472 kb on + strandat 265.472 kb on + strandat 265.474 kb on + strandat 265.474 kb on + strandat 265.474 kb on + strandat 265.475 kb on - strandat 265.522 kb on - strandat 265.640 kb on - strand, within EX31_RS11625

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
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263,113 + +0.7
263,114 - -0.2
263,114 - -0.8
263,114 - +1.4
263,114 - +0.1
263,114 - +0.4
263,114 - -0.5
263,114 - -1.6
263,114 - -0.6
263,114 - +1.1
263,116 + +1.9
263,116 + -0.2
263,116 + +0.1
263,117 - -0.3
263,125 + +0.1
263,125 + -1.3
263,186 + +0.4
263,187 - +1.9
263,187 - +1.4
263,187 - -1.0
263,187 - -0.2
263,187 - -0.6
263,220 + EX31_RS11610 0.13 +0.0
263,220 + EX31_RS11610 0.13 -1.1
263,455 + EX31_RS11610 0.43 -1.1
263,519 - EX31_RS11610 0.51 -0.4
263,519 - EX31_RS11610 0.51 -1.8
263,536 + EX31_RS11610 0.53 +0.1
263,537 - EX31_RS11610 0.53 -1.2
263,537 - EX31_RS11610 0.53 -1.1
263,583 + EX31_RS11610 0.59 -0.1
263,584 - EX31_RS11610 0.59 +0.9
263,585 + EX31_RS11610 0.59 -0.9
263,585 + EX31_RS11610 0.59 -0.9
263,657 + EX31_RS11610 0.68 -0.4
263,657 + EX31_RS11610 0.68 +0.9
263,658 - EX31_RS11610 0.68 -1.6
263,900 + -0.5
263,936 - -0.4
263,936 - +0.4
263,970 + -0.2
263,971 - -0.1
263,971 - +1.4
263,971 - +2.5
263,975 + +0.0
263,976 - +0.1
264,013 + -0.9
264,013 + +1.3
264,017 + +1.0
264,017 + +0.1
264,018 - +0.8
264,018 - +0.0
264,018 - +1.9
264,018 - +0.0
264,089 - EX31_RS11615 0.12 +1.3
264,106 + EX31_RS11615 0.15 -1.1
264,107 - EX31_RS11615 0.15 -1.3
264,238 + EX31_RS11615 0.34 +2.0
264,282 + EX31_RS11615 0.40 +0.1
264,282 + EX31_RS11615 0.40 +1.1
264,319 + EX31_RS11615 0.46 +2.5
264,333 - EX31_RS11615 0.48 +0.5
264,333 - EX31_RS11615 0.48 +1.4
264,339 - EX31_RS11615 0.49 +2.1
264,537 - EX31_RS11615 0.77 +0.4
264,553 + EX31_RS11615 0.80 +1.5
264,553 + EX31_RS11615 0.80 +0.6
264,554 - EX31_RS11615 0.80 -1.8
264,554 - EX31_RS11615 0.80 -1.1
264,595 + EX31_RS11615 0.86 +0.0
264,595 + EX31_RS11615 0.86 +1.1
264,596 - EX31_RS11615 0.86 +0.8
264,596 - EX31_RS11615 0.86 +0.8
264,596 - EX31_RS11615 0.86 -1.4
264,691 + +0.8
264,767 + +0.5
264,767 + +0.6
264,831 + EX31_RS11620 0.14 +0.4
264,832 - EX31_RS11620 0.15 -2.5
264,842 + EX31_RS11620 0.16 -0.1
264,843 - EX31_RS11620 0.16 -1.1
264,899 - EX31_RS11620 0.23 +0.9
264,902 - EX31_RS11620 0.23 -0.4
264,910 + EX31_RS11620 0.24 +1.9
264,911 - EX31_RS11620 0.24 -0.9
264,911 - EX31_RS11620 0.24 +1.9
264,915 - EX31_RS11620 0.25 -1.8
264,915 - EX31_RS11620 0.25 -0.6
264,915 - EX31_RS11620 0.25 -0.6
265,031 - EX31_RS11620 0.39 +0.9
265,048 - EX31_RS11620 0.41 +0.4
265,048 - EX31_RS11620 0.41 +0.4
265,060 - EX31_RS11620 0.43 -1.6
265,080 - EX31_RS11620 0.45 +0.9
265,087 + EX31_RS11620 0.46 +0.8
265,087 + EX31_RS11620 0.46 +0.1
265,087 + EX31_RS11620 0.46 -0.4
265,087 + EX31_RS11620 0.46 -0.5
265,088 - EX31_RS11620 0.46 -0.9
265,088 - EX31_RS11620 0.46 -1.3
265,088 - EX31_RS11620 0.46 +0.7
265,088 - EX31_RS11620 0.46 -0.5
265,129 + EX31_RS11620 0.51 +0.5
265,129 + EX31_RS11620 0.51 +0.5
265,129 + EX31_RS11620 0.51 -0.4
265,130 - EX31_RS11620 0.52 -0.6
265,152 - EX31_RS11620 0.54 -0.4
265,152 - EX31_RS11620 0.54 -0.3
265,154 + EX31_RS11620 0.55 +0.8
265,179 - EX31_RS11620 0.58 -0.5
265,217 + EX31_RS11620 0.62 -1.2
265,217 + EX31_RS11620 0.62 +1.4
265,217 + EX31_RS11620 0.62 +0.9
265,217 + EX31_RS11620 0.62 +0.8
265,218 - EX31_RS11620 0.62 -0.4
265,218 - EX31_RS11620 0.62 +0.9
265,218 - EX31_RS11620 0.62 +1.2
265,218 - EX31_RS11620 0.62 +2.5
265,273 + EX31_RS11620 0.69 -0.6
265,348 + EX31_RS11620 0.79 -0.2
265,349 - EX31_RS11620 0.79 +1.5
265,350 + EX31_RS11620 0.79 -1.6
265,351 - EX31_RS11620 0.79 -0.2
265,351 - EX31_RS11620 0.79 -0.6
265,351 - EX31_RS11620 0.79 +0.5
265,351 - EX31_RS11620 0.79 +0.2
265,351 - EX31_RS11620 0.79 -0.5
265,351 - EX31_RS11620 0.79 -0.1
265,359 + EX31_RS11620 0.80 +0.2
265,359 + EX31_RS11620 0.80 -0.8
265,360 - EX31_RS11620 0.80 +0.4
265,360 - EX31_RS11620 0.80 +0.9
265,388 + EX31_RS11620 0.84 +1.1
265,388 + EX31_RS11620 0.84 +0.3
265,397 - EX31_RS11620 0.85 +1.7
265,397 - EX31_RS11620 0.85 +0.1
265,414 + EX31_RS11620 0.87 -0.6
265,440 - -0.6
265,440 - +1.0
265,472 + -0.6
265,472 + +3.9
265,474 + +0.2
265,474 + +0.4
265,474 + -0.2
265,475 - +0.0
265,522 - +0.6
265,640 - EX31_RS11625 0.61 +0.8

Or see this region's nucleotide sequence