Strain Fitness in Rahnella sp. WP5 around EX31_RS06600

Experiment: L-Glutamine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06590 and EX31_RS06595 overlap by 8 nucleotidesEX31_RS06595 and EX31_RS06600 overlap by 8 nucleotidesEX31_RS06600 and EX31_RS06605 are separated by 9 nucleotides EX31_RS06590: EX31_RS06590 - endonuclease III, at 93,984 to 94,622 _RS06590 EX31_RS06595: EX31_RS06595 - electron transport complex subunit E, at 94,615 to 95,313 _RS06595 EX31_RS06600: EX31_RS06600 - electron transport complex subunit RsxG, at 95,306 to 95,938 _RS06600 EX31_RS06605: EX31_RS06605 - electron transport complex subunit RsxD, at 95,948 to 97,000 _RS06605 Position (kb) 95 96Strain fitness (log2 ratio) -2 -1 0 1 2at 94.352 kb on + strand, within EX31_RS06590at 94.400 kb on - strand, within EX31_RS06590at 94.400 kb on - strand, within EX31_RS06590at 94.400 kb on - strand, within EX31_RS06590at 94.400 kb on - strand, within EX31_RS06590at 94.400 kb on - strand, within EX31_RS06590at 94.460 kb on - strand, within EX31_RS06590at 94.513 kb on - strand, within EX31_RS06590at 94.513 kb on - strand, within EX31_RS06590at 94.513 kb on - strand, within EX31_RS06590at 95.046 kb on - strand, within EX31_RS06595at 95.046 kb on - strand, within EX31_RS06595at 95.100 kb on - strand, within EX31_RS06595at 95.133 kb on + strand, within EX31_RS06595at 95.179 kb on - strand, within EX31_RS06595at 95.269 kb on - strandat 95.385 kb on - strand, within EX31_RS06600at 95.410 kb on + strand, within EX31_RS06600at 95.411 kb on - strand, within EX31_RS06600at 95.441 kb on - strand, within EX31_RS06600at 95.587 kb on - strand, within EX31_RS06600at 95.587 kb on - strand, within EX31_RS06600at 95.701 kb on - strand, within EX31_RS06600at 95.701 kb on - strand, within EX31_RS06600at 95.701 kb on - strand, within EX31_RS06600at 95.776 kb on - strand, within EX31_RS06600at 95.776 kb on - strand, within EX31_RS06600at 95.820 kb on - strand, within EX31_RS06600at 95.876 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.934 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.979 kb on + strandat 96.015 kb on - strandat 96.015 kb on - strandat 96.075 kb on - strand, within EX31_RS06605at 96.255 kb on - strand, within EX31_RS06605at 96.255 kb on - strand, within EX31_RS06605at 96.481 kb on - strand, within EX31_RS06605at 96.503 kb on - strand, within EX31_RS06605at 96.503 kb on - strand, within EX31_RS06605at 96.558 kb on - strand, within EX31_RS06605at 96.558 kb on - strand, within EX31_RS06605at 96.619 kb on - strand, within EX31_RS06605at 96.619 kb on - strand, within EX31_RS06605at 96.619 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.743 kb on - strand, within EX31_RS06605at 96.816 kb on - strand, within EX31_RS06605at 96.917 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
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94,352 + EX31_RS06590 0.58 +1.5
94,400 - EX31_RS06590 0.65 +0.4
94,400 - EX31_RS06590 0.65 -0.6
94,400 - EX31_RS06590 0.65 +0.0
94,400 - EX31_RS06590 0.65 +0.6
94,400 - EX31_RS06590 0.65 +0.6
94,460 - EX31_RS06590 0.74 +0.9
94,513 - EX31_RS06590 0.83 -0.2
94,513 - EX31_RS06590 0.83 +0.2
94,513 - EX31_RS06590 0.83 +0.6
95,046 - EX31_RS06595 0.62 -0.2
95,046 - EX31_RS06595 0.62 -1.2
95,100 - EX31_RS06595 0.69 -1.1
95,133 + EX31_RS06595 0.74 +2.3
95,179 - EX31_RS06595 0.81 +0.4
95,269 - -1.2
95,385 - EX31_RS06600 0.12 +0.2
95,410 + EX31_RS06600 0.16 -0.6
95,411 - EX31_RS06600 0.17 +0.9
95,441 - EX31_RS06600 0.21 -1.1
95,587 - EX31_RS06600 0.44 -0.6
95,587 - EX31_RS06600 0.44 -0.2
95,701 - EX31_RS06600 0.62 -0.9
95,701 - EX31_RS06600 0.62 -2.3
95,701 - EX31_RS06600 0.62 -1.5
95,776 - EX31_RS06600 0.74 -0.6
95,776 - EX31_RS06600 0.74 +1.5
95,820 - EX31_RS06600 0.81 +0.2
95,876 - -0.5
95,930 - -1.6
95,930 - -0.5
95,930 - -1.0
95,930 - +0.8
95,930 - -1.2
95,930 - +0.8
95,930 - -0.4
95,930 - -0.5
95,930 - -1.2
95,934 - -1.4
95,939 - -0.5
95,939 - -0.4
95,939 - -1.2
95,939 - -1.4
95,939 - -0.3
95,939 - +0.5
95,939 - +0.7
95,939 - +0.9
95,939 - +1.1
95,979 + +1.8
96,015 - +0.0
96,015 - -1.2
96,075 - EX31_RS06605 0.12 +0.2
96,255 - EX31_RS06605 0.29 -0.8
96,255 - EX31_RS06605 0.29 +0.3
96,481 - EX31_RS06605 0.51 -0.1
96,503 - EX31_RS06605 0.53 +0.4
96,503 - EX31_RS06605 0.53 +0.1
96,558 - EX31_RS06605 0.58 -2.2
96,558 - EX31_RS06605 0.58 -0.9
96,619 - EX31_RS06605 0.64 -0.2
96,619 - EX31_RS06605 0.64 -1.4
96,619 - EX31_RS06605 0.64 +0.7
96,624 - EX31_RS06605 0.64 +0.3
96,624 - EX31_RS06605 0.64 -1.3
96,624 - EX31_RS06605 0.64 -1.9
96,624 - EX31_RS06605 0.64 -1.5
96,624 - EX31_RS06605 0.64 -0.5
96,624 - EX31_RS06605 0.64 +0.3
96,624 - EX31_RS06605 0.64 -0.8
96,624 - EX31_RS06605 0.64 -0.4
96,624 - EX31_RS06605 0.64 -0.8
96,743 - EX31_RS06605 0.75 -1.6
96,816 - EX31_RS06605 0.82 -0.1
96,917 - +0.3

Or see this region's nucleotide sequence