Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02648 and CCNA_02649 are separated by 25 nucleotides CCNA_02649 and CCNA_02650 overlap by 1 nucleotides CCNA_02650 and CCNA_02651 overlap by 4 nucleotides
CCNA_02648: CCNA_02648 - alpha/beta hydrolase family protein, at 2,802,232 to 2,803,152
_02648
CCNA_02649: CCNA_02649 - PaiB transcriptional regulator, at 2,803,178 to 2,803,789
_02649
CCNA_02650: CCNA_02650 - N-acetyl-anhydromuramyl-L-alanine amidase, at 2,803,789 to 2,804,517
_02650
CCNA_02651: CCNA_02651 - drug/metabolite transporter (DMT) family protein, at 2,804,514 to 2,805,407
_02651
Position (kb)
2803
2804 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2802.182 kb on - strand at 2802.187 kb on - strand at 2802.189 kb on + strand at 2802.189 kb on + strand at 2802.207 kb on - strand at 2802.219 kb on - strand at 2802.275 kb on - strand at 2802.312 kb on - strand at 2802.312 kb on - strand at 2802.326 kb on + strand, within CCNA_02648 at 2802.361 kb on + strand, within CCNA_02648 at 2802.413 kb on - strand, within CCNA_02648 at 2802.448 kb on - strand, within CCNA_02648 at 2802.485 kb on + strand, within CCNA_02648 at 2802.485 kb on + strand, within CCNA_02648 at 2802.493 kb on - strand, within CCNA_02648 at 2802.504 kb on + strand, within CCNA_02648 at 2802.550 kb on + strand, within CCNA_02648 at 2802.581 kb on - strand, within CCNA_02648 at 2802.586 kb on - strand, within CCNA_02648 at 2802.625 kb on + strand, within CCNA_02648 at 2802.679 kb on + strand, within CCNA_02648 at 2802.715 kb on + strand, within CCNA_02648 at 2802.717 kb on + strand, within CCNA_02648 at 2802.717 kb on + strand, within CCNA_02648 at 2802.735 kb on + strand, within CCNA_02648 at 2802.772 kb on + strand, within CCNA_02648 at 2802.782 kb on + strand, within CCNA_02648 at 2802.885 kb on - strand, within CCNA_02648 at 2802.887 kb on + strand, within CCNA_02648 at 2802.926 kb on - strand, within CCNA_02648 at 2802.926 kb on - strand, within CCNA_02648 at 2802.991 kb on - strand, within CCNA_02648 at 2803.020 kb on + strand, within CCNA_02648 at 2803.063 kb on + strand at 2803.076 kb on + strand at 2803.084 kb on - strand at 2803.143 kb on - strand at 2803.154 kb on - strand at 2803.210 kb on - strand at 2803.226 kb on + strand at 2803.257 kb on + strand, within CCNA_02649 at 2803.271 kb on - strand, within CCNA_02649 at 2803.374 kb on + strand, within CCNA_02649 at 2803.382 kb on - strand, within CCNA_02649 at 2803.382 kb on - strand, within CCNA_02649 at 2803.414 kb on - strand, within CCNA_02649 at 2803.478 kb on - strand, within CCNA_02649 at 2803.510 kb on + strand, within CCNA_02649 at 2803.512 kb on - strand, within CCNA_02649 at 2803.520 kb on + strand, within CCNA_02649 at 2803.520 kb on + strand, within CCNA_02649 at 2803.621 kb on + strand, within CCNA_02649 at 2803.722 kb on + strand, within CCNA_02649 at 2803.723 kb on - strand, within CCNA_02649 at 2803.742 kb on + strand at 2803.742 kb on + strand at 2803.747 kb on + strand at 2803.750 kb on - strand at 2803.859 kb on - strand at 2803.936 kb on + strand, within CCNA_02650 at 2803.936 kb on + strand, within CCNA_02650 at 2803.944 kb on - strand, within CCNA_02650 at 2803.944 kb on - strand, within CCNA_02650 at 2803.944 kb on - strand, within CCNA_02650 at 2803.944 kb on - strand, within CCNA_02650 at 2803.988 kb on + strand, within CCNA_02650 at 2803.994 kb on + strand, within CCNA_02650 at 2804.048 kb on - strand, within CCNA_02650 at 2804.127 kb on + strand, within CCNA_02650 at 2804.199 kb on - strand, within CCNA_02650 at 2804.199 kb on - strand, within CCNA_02650 at 2804.211 kb on + strand, within CCNA_02650 at 2804.211 kb on + strand, within CCNA_02650 at 2804.219 kb on - strand, within CCNA_02650 at 2804.282 kb on - strand, within CCNA_02650 at 2804.368 kb on - strand, within CCNA_02650 at 2804.443 kb on - strand, within CCNA_02650 at 2804.461 kb on - strand at 2804.473 kb on - strand at 2804.495 kb on + strand at 2804.555 kb on + strand at 2804.556 kb on - strand at 2804.585 kb on - strand at 2804.595 kb on + strand at 2804.605 kb on + strand, within CCNA_02651 at 2804.651 kb on + strand, within CCNA_02651 at 2804.653 kb on - strand, within CCNA_02651 at 2804.670 kb on - strand, within CCNA_02651 at 2804.687 kb on - strand, within CCNA_02651 at 2804.715 kb on + strand, within CCNA_02651 at 2804.738 kb on - strand, within CCNA_02651 at 2804.760 kb on - strand, within CCNA_02651 at 2804.767 kb on + strand, within CCNA_02651 at 2804.767 kb on + strand, within CCNA_02651
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 2,802,182 - -0.2 2,802,187 - -1.3 2,802,189 + +1.1 2,802,189 + -2.8 2,802,207 - -2.1 2,802,219 - -1.4 2,802,275 - +0.0 2,802,312 - -0.4 2,802,312 - -1.9 2,802,326 + CCNA_02648 0.10 +0.2 2,802,361 + CCNA_02648 0.14 +0.3 2,802,413 - CCNA_02648 0.20 -1.3 2,802,448 - CCNA_02648 0.23 -3.0 2,802,485 + CCNA_02648 0.27 -1.8 2,802,485 + CCNA_02648 0.27 +0.7 2,802,493 - CCNA_02648 0.28 -0.8 2,802,504 + CCNA_02648 0.30 -0.3 2,802,550 + CCNA_02648 0.35 -1.0 2,802,581 - CCNA_02648 0.38 -2.3 2,802,586 - CCNA_02648 0.38 -1.0 2,802,625 + CCNA_02648 0.43 -0.5 2,802,679 + CCNA_02648 0.49 -0.3 2,802,715 + CCNA_02648 0.52 -1.6 2,802,717 + CCNA_02648 0.53 -2.4 2,802,717 + CCNA_02648 0.53 -2.0 2,802,735 + CCNA_02648 0.55 -2.0 2,802,772 + CCNA_02648 0.59 -0.5 2,802,782 + CCNA_02648 0.60 -1.5 2,802,885 - CCNA_02648 0.71 -1.1 2,802,887 + CCNA_02648 0.71 -0.3 2,802,926 - CCNA_02648 0.75 -1.2 2,802,926 - CCNA_02648 0.75 -0.7 2,802,991 - CCNA_02648 0.82 -2.5 2,803,020 + CCNA_02648 0.86 +1.6 2,803,063 + +1.6 2,803,076 + +0.9 2,803,084 - +0.4 2,803,143 - -0.7 2,803,154 - -2.2 2,803,210 - -3.4 2,803,226 + -2.6 2,803,257 + CCNA_02649 0.13 -0.4 2,803,271 - CCNA_02649 0.15 -2.6 2,803,374 + CCNA_02649 0.32 +0.6 2,803,382 - CCNA_02649 0.33 +1.2 2,803,382 - CCNA_02649 0.33 +0.4 2,803,414 - CCNA_02649 0.39 -1.0 2,803,478 - CCNA_02649 0.49 -0.3 2,803,510 + CCNA_02649 0.54 -0.9 2,803,512 - CCNA_02649 0.55 +1.3 2,803,520 + CCNA_02649 0.56 -0.7 2,803,520 + CCNA_02649 0.56 -1.4 2,803,621 + CCNA_02649 0.72 -2.0 2,803,722 + CCNA_02649 0.89 -0.2 2,803,723 - CCNA_02649 0.89 -2.8 2,803,742 + +0.1 2,803,742 + +0.5 2,803,747 + -0.4 2,803,750 - +0.2 2,803,859 - -1.5 2,803,936 + CCNA_02650 0.20 -2.1 2,803,936 + CCNA_02650 0.20 -1.2 2,803,944 - CCNA_02650 0.21 -3.1 2,803,944 - CCNA_02650 0.21 +0.2 2,803,944 - CCNA_02650 0.21 -1.9 2,803,944 - CCNA_02650 0.21 -0.8 2,803,988 + CCNA_02650 0.27 -2.6 2,803,994 + CCNA_02650 0.28 -0.8 2,804,048 - CCNA_02650 0.36 -2.2 2,804,127 + CCNA_02650 0.46 -1.7 2,804,199 - CCNA_02650 0.56 -2.5 2,804,199 - CCNA_02650 0.56 +0.7 2,804,211 + CCNA_02650 0.58 -0.3 2,804,211 + CCNA_02650 0.58 -2.0 2,804,219 - CCNA_02650 0.59 -1.0 2,804,282 - CCNA_02650 0.68 -1.3 2,804,368 - CCNA_02650 0.79 -2.2 2,804,443 - CCNA_02650 0.90 -1.6 2,804,461 - -1.6 2,804,473 - -0.7 2,804,495 + -2.4 2,804,555 + -0.5 2,804,556 - -2.2 2,804,585 - -1.3 2,804,595 + -2.3 2,804,605 + CCNA_02651 0.10 -2.3 2,804,651 + CCNA_02651 0.15 -1.9 2,804,653 - CCNA_02651 0.16 -2.2 2,804,670 - CCNA_02651 0.17 -1.5 2,804,687 - CCNA_02651 0.19 +0.1 2,804,715 + CCNA_02651 0.22 -0.7 2,804,738 - CCNA_02651 0.25 -0.4 2,804,760 - CCNA_02651 0.28 +0.2 2,804,767 + CCNA_02651 0.28 -3.1 2,804,767 + CCNA_02651 0.28 -1.3
Or see this region's nucleotide sequence