Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02373 and CCNA_02374 overlap by 7 nucleotides CCNA_02374 and CCNA_02375 are separated by 58 nucleotides CCNA_02375 and CCNA_02376 overlap by 12 nucleotides CCNA_02376 and CCNA_02377 overlap by 4 nucleotides CCNA_02377 and CCNA_R0055 are separated by 225 nucleotides
CCNA_02373: CCNA_02373 - transposase, at 2,518,748 to 2,519,674
_02373
CCNA_02374: CCNA_02374 - transposase, at 2,519,668 to 2,519,934
_02374
CCNA_02375: CCNA_02375 - hypothetical protein, at 2,519,993 to 2,520,256
_02375
CCNA_02376: CCNA_02376 - hypothetical protein, at 2,520,245 to 2,520,523
_02376
CCNA_02377: CCNA_02377 - hypothetical protein, at 2,520,520 to 2,521,242
_02377
CCNA_R0055: CCNA_R0055 - tRNA-Ile, at 2,521,468 to 2,521,543
_R0055
Position (kb)
2520
2521 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2519.999 kb on + strand at 2519.999 kb on + strand at 2520.068 kb on + strand, within CCNA_02375 at 2520.076 kb on - strand, within CCNA_02375 at 2520.076 kb on - strand, within CCNA_02375 at 2520.092 kb on + strand, within CCNA_02375 at 2520.109 kb on - strand, within CCNA_02375 at 2520.137 kb on + strand, within CCNA_02375 at 2520.137 kb on + strand, within CCNA_02375 at 2520.182 kb on - strand, within CCNA_02375 at 2520.184 kb on - strand, within CCNA_02375 at 2520.209 kb on - strand, within CCNA_02375 at 2520.221 kb on - strand, within CCNA_02375 at 2520.223 kb on + strand, within CCNA_02375 at 2520.251 kb on + strand at 2520.251 kb on + strand at 2520.259 kb on - strand at 2520.393 kb on + strand, within CCNA_02376 at 2520.414 kb on + strand, within CCNA_02376 at 2520.481 kb on - strand, within CCNA_02376 at 2520.491 kb on - strand, within CCNA_02376 at 2520.525 kb on - strand at 2520.549 kb on + strand at 2520.583 kb on - strand at 2520.595 kb on + strand, within CCNA_02377 at 2520.602 kb on - strand, within CCNA_02377 at 2520.603 kb on - strand, within CCNA_02377 at 2520.603 kb on - strand, within CCNA_02377 at 2520.615 kb on + strand, within CCNA_02377 at 2520.659 kb on - strand, within CCNA_02377 at 2520.727 kb on + strand, within CCNA_02377 at 2520.735 kb on - strand, within CCNA_02377 at 2520.741 kb on - strand, within CCNA_02377 at 2520.760 kb on - strand, within CCNA_02377 at 2520.820 kb on + strand, within CCNA_02377 at 2520.871 kb on - strand, within CCNA_02377 at 2520.893 kb on + strand, within CCNA_02377 at 2520.955 kb on - strand, within CCNA_02377 at 2520.982 kb on + strand, within CCNA_02377 at 2521.002 kb on - strand, within CCNA_02377 at 2521.002 kb on - strand, within CCNA_02377 at 2521.003 kb on - strand, within CCNA_02377 at 2521.027 kb on + strand, within CCNA_02377 at 2521.034 kb on - strand, within CCNA_02377 at 2521.034 kb on - strand, within CCNA_02377 at 2521.081 kb on + strand, within CCNA_02377 at 2521.081 kb on + strand, within CCNA_02377 at 2521.089 kb on - strand, within CCNA_02377 at 2521.089 kb on - strand, within CCNA_02377 at 2521.089 kb on - strand, within CCNA_02377 at 2521.089 kb on - strand, within CCNA_02377 at 2521.094 kb on - strand, within CCNA_02377 at 2521.104 kb on + strand, within CCNA_02377 at 2521.236 kb on - strand at 2521.264 kb on + strand at 2521.272 kb on - strand at 2521.369 kb on - strand at 2521.369 kb on - strand at 2521.385 kb on + strand at 2521.393 kb on - strand at 2521.393 kb on - strand at 2521.409 kb on - strand at 2521.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 2,519,999 + -2.8 2,519,999 + -2.0 2,520,068 + CCNA_02375 0.28 -3.0 2,520,076 - CCNA_02375 0.31 -0.6 2,520,076 - CCNA_02375 0.31 +0.4 2,520,092 + CCNA_02375 0.38 -0.8 2,520,109 - CCNA_02375 0.44 -1.3 2,520,137 + CCNA_02375 0.55 -3.0 2,520,137 + CCNA_02375 0.55 +0.6 2,520,182 - CCNA_02375 0.72 +0.1 2,520,184 - CCNA_02375 0.72 -0.1 2,520,209 - CCNA_02375 0.82 +1.9 2,520,221 - CCNA_02375 0.86 +0.8 2,520,223 + CCNA_02375 0.87 +0.0 2,520,251 + -2.5 2,520,251 + -0.3 2,520,259 - +0.6 2,520,393 + CCNA_02376 0.53 -2.0 2,520,414 + CCNA_02376 0.61 +0.9 2,520,481 - CCNA_02376 0.85 -1.8 2,520,491 - CCNA_02376 0.88 -1.4 2,520,525 - -0.6 2,520,549 + -1.3 2,520,583 - -1.2 2,520,595 + CCNA_02377 0.10 -0.6 2,520,602 - CCNA_02377 0.11 -1.3 2,520,603 - CCNA_02377 0.11 +1.7 2,520,603 - CCNA_02377 0.11 +1.9 2,520,615 + CCNA_02377 0.13 -2.3 2,520,659 - CCNA_02377 0.19 -2.1 2,520,727 + CCNA_02377 0.29 -1.0 2,520,735 - CCNA_02377 0.30 +0.3 2,520,741 - CCNA_02377 0.31 -2.3 2,520,760 - CCNA_02377 0.33 -0.7 2,520,820 + CCNA_02377 0.41 -2.2 2,520,871 - CCNA_02377 0.49 +0.2 2,520,893 + CCNA_02377 0.52 -2.7 2,520,955 - CCNA_02377 0.60 -0.7 2,520,982 + CCNA_02377 0.64 -1.0 2,521,002 - CCNA_02377 0.67 -1.5 2,521,002 - CCNA_02377 0.67 -2.4 2,521,003 - CCNA_02377 0.67 -0.3 2,521,027 + CCNA_02377 0.70 -1.6 2,521,034 - CCNA_02377 0.71 -0.9 2,521,034 - CCNA_02377 0.71 -1.4 2,521,081 + CCNA_02377 0.78 -0.7 2,521,081 + CCNA_02377 0.78 -2.7 2,521,089 - CCNA_02377 0.79 -1.2 2,521,089 - CCNA_02377 0.79 -0.6 2,521,089 - CCNA_02377 0.79 -1.8 2,521,089 - CCNA_02377 0.79 -2.4 2,521,094 - CCNA_02377 0.79 -1.8 2,521,104 + CCNA_02377 0.81 -2.1 2,521,236 - -1.7 2,521,264 + -1.9 2,521,272 - -1.1 2,521,369 - +2.9 2,521,369 - +1.1 2,521,385 + -2.2 2,521,393 - +1.1 2,521,393 - -2.5 2,521,409 - -0.6 2,521,409 - -1.0
Or see this region's nucleotide sequence