Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01949

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01948 and CCNA_01949 overlap by 20 nucleotidesCCNA_01949 and CCNA_01950 are separated by 77 nucleotides CCNA_01948: CCNA_01948 - peptidoglycan-specific endopeptidase, M23 family, at 2,090,363 to 2,091,514 _01948 CCNA_01949: CCNA_01949 - bactofilin A BacA, at 2,091,495 to 2,091,980 _01949 CCNA_01950: CCNA_01950 - peptide chain Release factor 2 (RF-2), at 2,092,058 to 2,093,173 _01950 Position (kb) 2091 2092Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2090.526 kb on - strand, within CCNA_01948at 2090.526 kb on - strand, within CCNA_01948at 2090.612 kb on + strand, within CCNA_01948at 2090.627 kb on + strand, within CCNA_01948at 2090.635 kb on - strand, within CCNA_01948at 2090.636 kb on + strand, within CCNA_01948at 2090.636 kb on + strand, within CCNA_01948at 2090.636 kb on + strand, within CCNA_01948at 2090.640 kb on - strand, within CCNA_01948at 2090.644 kb on - strand, within CCNA_01948at 2090.644 kb on - strand, within CCNA_01948at 2090.644 kb on - strand, within CCNA_01948at 2090.727 kb on + strand, within CCNA_01948at 2090.727 kb on + strand, within CCNA_01948at 2090.735 kb on - strand, within CCNA_01948at 2090.737 kb on - strand, within CCNA_01948at 2090.840 kb on + strand, within CCNA_01948at 2090.848 kb on - strand, within CCNA_01948at 2090.849 kb on + strand, within CCNA_01948at 2090.864 kb on + strand, within CCNA_01948at 2090.864 kb on + strand, within CCNA_01948at 2090.864 kb on + strand, within CCNA_01948at 2090.872 kb on - strand, within CCNA_01948at 2090.872 kb on - strand, within CCNA_01948at 2090.921 kb on + strand, within CCNA_01948at 2090.986 kb on + strand, within CCNA_01948at 2091.016 kb on - strand, within CCNA_01948at 2091.016 kb on - strand, within CCNA_01948at 2091.028 kb on - strand, within CCNA_01948at 2091.164 kb on - strand, within CCNA_01948at 2091.194 kb on + strand, within CCNA_01948at 2091.234 kb on - strand, within CCNA_01948at 2091.248 kb on - strand, within CCNA_01948at 2091.253 kb on - strand, within CCNA_01948at 2091.281 kb on + strand, within CCNA_01948at 2091.393 kb on + strand, within CCNA_01948at 2091.443 kb on - strandat 2091.448 kb on - strandat 2091.451 kb on + strandat 2091.458 kb on + strandat 2091.458 kb on + strandat 2091.466 kb on - strandat 2091.535 kb on - strandat 2091.565 kb on - strand, within CCNA_01949at 2091.597 kb on + strand, within CCNA_01949at 2091.599 kb on + strand, within CCNA_01949at 2091.599 kb on + strand, within CCNA_01949at 2091.617 kb on + strand, within CCNA_01949at 2091.796 kb on + strand, within CCNA_01949at 2091.806 kb on + strand, within CCNA_01949at 2091.942 kb on + strandat 2091.975 kb on + strandat 2092.082 kb on + strandat 2092.090 kb on - strandat 2092.090 kb on - strandat 2092.097 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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2,090,526 - CCNA_01948 0.14 -0.5
2,090,526 - CCNA_01948 0.14 +1.4
2,090,612 + CCNA_01948 0.22 -0.3
2,090,627 + CCNA_01948 0.23 +0.6
2,090,635 - CCNA_01948 0.24 -0.7
2,090,636 + CCNA_01948 0.24 +2.6
2,090,636 + CCNA_01948 0.24 +1.4
2,090,636 + CCNA_01948 0.24 +1.5
2,090,640 - CCNA_01948 0.24 +1.0
2,090,644 - CCNA_01948 0.24 -0.1
2,090,644 - CCNA_01948 0.24 -0.3
2,090,644 - CCNA_01948 0.24 -1.3
2,090,727 + CCNA_01948 0.32 +1.1
2,090,727 + CCNA_01948 0.32 +1.2
2,090,735 - CCNA_01948 0.32 +0.1
2,090,737 - CCNA_01948 0.32 +0.6
2,090,840 + CCNA_01948 0.41 +1.0
2,090,848 - CCNA_01948 0.42 -1.4
2,090,849 + CCNA_01948 0.42 +0.1
2,090,864 + CCNA_01948 0.43 +1.4
2,090,864 + CCNA_01948 0.43 +1.5
2,090,864 + CCNA_01948 0.43 +3.2
2,090,872 - CCNA_01948 0.44 -1.9
2,090,872 - CCNA_01948 0.44 -0.5
2,090,921 + CCNA_01948 0.48 +1.5
2,090,986 + CCNA_01948 0.54 +1.0
2,091,016 - CCNA_01948 0.57 -0.8
2,091,016 - CCNA_01948 0.57 +0.7
2,091,028 - CCNA_01948 0.58 +0.5
2,091,164 - CCNA_01948 0.70 -1.2
2,091,194 + CCNA_01948 0.72 +1.3
2,091,234 - CCNA_01948 0.76 -0.4
2,091,248 - CCNA_01948 0.77 -0.5
2,091,253 - CCNA_01948 0.77 -0.6
2,091,281 + CCNA_01948 0.80 +2.5
2,091,393 + CCNA_01948 0.89 +0.9
2,091,443 - +0.4
2,091,448 - +0.0
2,091,451 + +1.2
2,091,458 + +1.3
2,091,458 + +1.3
2,091,466 - +0.0
2,091,535 - -0.8
2,091,565 - CCNA_01949 0.14 +0.7
2,091,597 + CCNA_01949 0.21 +1.6
2,091,599 + CCNA_01949 0.21 +5.1
2,091,599 + CCNA_01949 0.21 +1.3
2,091,617 + CCNA_01949 0.25 +1.6
2,091,796 + CCNA_01949 0.62 +1.6
2,091,806 + CCNA_01949 0.64 +0.7
2,091,942 + +1.5
2,091,975 + +1.7
2,092,082 + +0.1
2,092,090 - +2.0
2,092,090 - +1.0
2,092,097 - +1.4

Or see this region's nucleotide sequence