Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_66 and Ac3H11_67 overlap by 4 nucleotides Ac3H11_67 and Ac3H11_68 are separated by 115 nucleotides
Ac3H11_66 - Benzoate transport, ATPase component, at 68,938 to 69,708
_66
Ac3H11_67 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 69,705 to 70,448
_67
Ac3H11_68 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 70,564 to 71,550
_68
Position (kb) 69
70
71 Strain fitness (log2 ratio) -2
-1
0
1 at 69.070 kb on + strand, within Ac3H11_66 at 69.070 kb on + strand, within Ac3H11_66 at 69.070 kb on + strand, within Ac3H11_66 at 69.071 kb on - strand, within Ac3H11_66 at 69.071 kb on - strand, within Ac3H11_66 at 69.429 kb on + strand, within Ac3H11_66 at 69.430 kb on - strand, within Ac3H11_66 at 69.430 kb on - strand, within Ac3H11_66 at 69.451 kb on + strand, within Ac3H11_66 at 69.451 kb on + strand, within Ac3H11_66 at 69.451 kb on + strand, within Ac3H11_66 at 69.451 kb on + strand, within Ac3H11_66 at 69.451 kb on + strand, within Ac3H11_66 at 69.452 kb on - strand, within Ac3H11_66 at 69.452 kb on - strand, within Ac3H11_66 at 69.774 kb on + strand at 69.972 kb on + strand, within Ac3H11_67 at 69.973 kb on - strand, within Ac3H11_67 at 70.507 kb on - strand at 70.826 kb on - strand, within Ac3H11_68 at 71.443 kb on + strand, within Ac3H11_68 at 71.444 kb on - strand, within Ac3H11_68
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 69,070 + Ac3H11_66 0.17 -1.3 69,070 + Ac3H11_66 0.17 -1.4 69,070 + Ac3H11_66 0.17 +0.1 69,071 - Ac3H11_66 0.17 -1.5 69,071 - Ac3H11_66 0.17 +0.0 69,429 + Ac3H11_66 0.64 -1.8 69,430 - Ac3H11_66 0.64 +0.2 69,430 - Ac3H11_66 0.64 -0.5 69,451 + Ac3H11_66 0.67 -1.2 69,451 + Ac3H11_66 0.67 +0.2 69,451 + Ac3H11_66 0.67 -0.7 69,451 + Ac3H11_66 0.67 +0.2 69,451 + Ac3H11_66 0.67 -0.3 69,452 - Ac3H11_66 0.67 +0.1 69,452 - Ac3H11_66 0.67 -1.1 69,774 + +0.5 69,972 + Ac3H11_67 0.36 -0.1 69,973 - Ac3H11_67 0.36 -0.3 70,507 - +0.4 70,826 - Ac3H11_68 0.27 -1.1 71,443 + Ac3H11_68 0.89 +1.4 71,444 - Ac3H11_68 0.89 -1.4
Or see this region's nucleotide sequence