Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3780

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3779 and Ac3H11_3780 are separated by 2 nucleotidesAc3H11_3780 and Ac3H11_3781 are separated by 118 nucleotidesAc3H11_3781 and Ac3H11_3782 are separated by 4 nucleotidesAc3H11_3782 and Ac3H11_3783 are separated by 43 nucleotides Ac3H11_3779 - Mu-like prophage FluMu protein gp29, at 27,056 to 28,627 _3779 Ac3H11_3780 - Phage (Mu-like) virion morphogenesis protein, at 28,630 to 29,907 _3780 Ac3H11_3781 - hypothetical protein, at 30,026 to 30,481 _3781 Ac3H11_3782 - hypothetical protein, at 30,486 to 30,686 _3782 Ac3H11_3783 - Phage protein, at 30,730 to 31,311 _3783 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1at 27.650 kb on + strand, within Ac3H11_3779at 27.764 kb on + strand, within Ac3H11_3779at 27.765 kb on - strand, within Ac3H11_3779at 27.923 kb on + strand, within Ac3H11_3779at 27.924 kb on - strand, within Ac3H11_3779at 28.100 kb on + strand, within Ac3H11_3779at 28.128 kb on - strand, within Ac3H11_3779at 28.232 kb on + strand, within Ac3H11_3779at 28.233 kb on - strand, within Ac3H11_3779at 28.233 kb on - strand, within Ac3H11_3779at 28.531 kb on - strandat 28.984 kb on + strand, within Ac3H11_3780at 28.985 kb on - strand, within Ac3H11_3780at 28.985 kb on - strand, within Ac3H11_3780at 29.008 kb on + strand, within Ac3H11_3780at 29.008 kb on + strand, within Ac3H11_3780at 29.009 kb on - strand, within Ac3H11_3780at 29.219 kb on - strand, within Ac3H11_3780at 29.219 kb on - strand, within Ac3H11_3780at 29.219 kb on - strand, within Ac3H11_3780at 29.327 kb on + strand, within Ac3H11_3780at 29.327 kb on + strand, within Ac3H11_3780at 29.327 kb on + strand, within Ac3H11_3780at 29.331 kb on + strand, within Ac3H11_3780at 29.332 kb on - strand, within Ac3H11_3780at 29.332 kb on - strand, within Ac3H11_3780at 29.332 kb on - strand, within Ac3H11_3780at 29.332 kb on - strand, within Ac3H11_3780at 29.332 kb on - strand, within Ac3H11_3780at 29.351 kb on - strand, within Ac3H11_3780at 29.833 kb on + strandat 29.834 kb on - strandat 29.834 kb on - strandat 29.953 kb on + strandat 30.072 kb on - strand, within Ac3H11_3781at 30.228 kb on - strand, within Ac3H11_3781at 30.456 kb on + strandat 30.456 kb on + strandat 30.457 kb on - strandat 30.538 kb on - strand, within Ac3H11_3782at 30.595 kb on - strand, within Ac3H11_3782at 30.603 kb on + strand, within Ac3H11_3782at 30.603 kb on + strand, within Ac3H11_3782at 30.603 kb on + strand, within Ac3H11_3782at 30.604 kb on - strand, within Ac3H11_3782at 30.604 kb on - strand, within Ac3H11_3782at 30.615 kb on + strand, within Ac3H11_3782at 30.616 kb on - strand, within Ac3H11_3782at 30.616 kb on - strand, within Ac3H11_3782at 30.616 kb on - strand, within Ac3H11_3782at 30.616 kb on - strand, within Ac3H11_3782at 30.616 kb on - strand, within Ac3H11_3782at 30.616 kb on - strand, within Ac3H11_3782at 30.679 kb on - strandat 30.742 kb on + strandat 30.857 kb on + strand, within Ac3H11_3783at 30.858 kb on - strand, within Ac3H11_3783

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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27,650 + Ac3H11_3779 0.38 +1.7
27,764 + Ac3H11_3779 0.45 -0.7
27,765 - Ac3H11_3779 0.45 -1.0
27,923 + Ac3H11_3779 0.55 -0.2
27,924 - Ac3H11_3779 0.55 -0.2
28,100 + Ac3H11_3779 0.66 -0.3
28,128 - Ac3H11_3779 0.68 -0.7
28,232 + Ac3H11_3779 0.75 +0.1
28,233 - Ac3H11_3779 0.75 -0.4
28,233 - Ac3H11_3779 0.75 +0.9
28,531 - -1.1
28,984 + Ac3H11_3780 0.28 +0.0
28,985 - Ac3H11_3780 0.28 +1.2
28,985 - Ac3H11_3780 0.28 +0.6
29,008 + Ac3H11_3780 0.30 +0.3
29,008 + Ac3H11_3780 0.30 +0.2
29,009 - Ac3H11_3780 0.30 -0.3
29,219 - Ac3H11_3780 0.46 +0.8
29,219 - Ac3H11_3780 0.46 +1.6
29,219 - Ac3H11_3780 0.46 +1.3
29,327 + Ac3H11_3780 0.55 -2.2
29,327 + Ac3H11_3780 0.55 +0.4
29,327 + Ac3H11_3780 0.55 -0.9
29,331 + Ac3H11_3780 0.55 +0.2
29,332 - Ac3H11_3780 0.55 -1.1
29,332 - Ac3H11_3780 0.55 -1.7
29,332 - Ac3H11_3780 0.55 +0.1
29,332 - Ac3H11_3780 0.55 +0.1
29,332 - Ac3H11_3780 0.55 -0.0
29,351 - Ac3H11_3780 0.56 +0.1
29,833 + +0.4
29,834 - +0.3
29,834 - -1.2
29,953 + +1.3
30,072 - Ac3H11_3781 0.10 -1.0
30,228 - Ac3H11_3781 0.44 +0.7
30,456 + +0.7
30,456 + +0.0
30,457 - +0.8
30,538 - Ac3H11_3782 0.26 -0.2
30,595 - Ac3H11_3782 0.54 +0.2
30,603 + Ac3H11_3782 0.58 -0.3
30,603 + Ac3H11_3782 0.58 +0.3
30,603 + Ac3H11_3782 0.58 +0.5
30,604 - Ac3H11_3782 0.59 -1.7
30,604 - Ac3H11_3782 0.59 +0.5
30,615 + Ac3H11_3782 0.64 -1.5
30,616 - Ac3H11_3782 0.65 -1.3
30,616 - Ac3H11_3782 0.65 -0.3
30,616 - Ac3H11_3782 0.65 -0.2
30,616 - Ac3H11_3782 0.65 +0.9
30,616 - Ac3H11_3782 0.65 -0.8
30,616 - Ac3H11_3782 0.65 +0.0
30,679 - +0.3
30,742 + +0.2
30,857 + Ac3H11_3783 0.22 -1.1
30,858 - Ac3H11_3783 0.22 -1.4

Or see this region's nucleotide sequence