Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3434

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3433 and Ac3H11_3434 are separated by 80 nucleotidesAc3H11_3434 and Ac3H11_3435 are separated by 55 nucleotidesAc3H11_3435 and Ac3H11_3436 are separated by 21 nucleotides Ac3H11_3433 - branched-chain amino acid-binding protein, at 116,641 to 117,852 _3433 Ac3H11_3434 - FIG00440100: hypothetical protein, at 117,933 to 118,517 _3434 Ac3H11_3435 - Mll4877 protein, at 118,573 to 119,214 _3435 Ac3H11_3436 - FIG00845751: hypothetical protein, at 119,236 to 120,156 _3436 Position (kb) 117 118 119Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 116.945 kb on + strand, within Ac3H11_3433at 116.945 kb on + strand, within Ac3H11_3433at 116.966 kb on + strand, within Ac3H11_3433at 116.967 kb on - strand, within Ac3H11_3433at 117.069 kb on - strand, within Ac3H11_3433at 117.069 kb on - strand, within Ac3H11_3433at 117.127 kb on - strand, within Ac3H11_3433at 117.332 kb on + strand, within Ac3H11_3433at 117.332 kb on + strand, within Ac3H11_3433at 117.332 kb on + strand, within Ac3H11_3433at 117.341 kb on + strand, within Ac3H11_3433at 117.407 kb on + strand, within Ac3H11_3433at 117.407 kb on + strand, within Ac3H11_3433at 117.408 kb on - strand, within Ac3H11_3433at 117.408 kb on - strand, within Ac3H11_3433at 117.408 kb on - strand, within Ac3H11_3433at 117.408 kb on - strand, within Ac3H11_3433at 117.408 kb on - strand, within Ac3H11_3433at 117.434 kb on + strand, within Ac3H11_3433at 117.434 kb on + strand, within Ac3H11_3433at 117.434 kb on + strand, within Ac3H11_3433at 117.434 kb on + strand, within Ac3H11_3433at 117.435 kb on - strand, within Ac3H11_3433at 117.435 kb on - strand, within Ac3H11_3433at 117.713 kb on + strand, within Ac3H11_3433at 117.714 kb on - strand, within Ac3H11_3433at 117.714 kb on - strand, within Ac3H11_3433at 117.714 kb on - strand, within Ac3H11_3433at 117.744 kb on - strandat 117.744 kb on - strandat 117.744 kb on - strandat 117.958 kb on - strandat 118.093 kb on + strand, within Ac3H11_3434at 118.093 kb on + strand, within Ac3H11_3434at 118.093 kb on + strand, within Ac3H11_3434at 118.280 kb on - strand, within Ac3H11_3434at 118.387 kb on + strand, within Ac3H11_3434at 118.387 kb on + strand, within Ac3H11_3434at 118.387 kb on + strand, within Ac3H11_3434at 118.387 kb on + strand, within Ac3H11_3434at 118.388 kb on - strand, within Ac3H11_3434at 118.388 kb on - strand, within Ac3H11_3434at 118.388 kb on - strand, within Ac3H11_3434at 118.388 kb on - strand, within Ac3H11_3434at 118.660 kb on + strand, within Ac3H11_3435at 118.661 kb on - strand, within Ac3H11_3435at 118.661 kb on - strand, within Ac3H11_3435at 118.661 kb on - strand, within Ac3H11_3435at 118.733 kb on + strand, within Ac3H11_3435at 118.733 kb on + strand, within Ac3H11_3435at 118.733 kb on + strand, within Ac3H11_3435at 118.734 kb on - strand, within Ac3H11_3435at 118.734 kb on - strand, within Ac3H11_3435at 118.734 kb on - strand, within Ac3H11_3435at 118.863 kb on - strand, within Ac3H11_3435at 118.979 kb on + strand, within Ac3H11_3435at 118.979 kb on + strand, within Ac3H11_3435at 118.979 kb on + strand, within Ac3H11_3435at 118.980 kb on - strand, within Ac3H11_3435at 119.045 kb on - strand, within Ac3H11_3435at 119.045 kb on - strand, within Ac3H11_3435at 119.088 kb on - strand, within Ac3H11_3435at 119.204 kb on - strandat 119.245 kb on + strandat 119.246 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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116,945 + Ac3H11_3433 0.25 +0.5
116,945 + Ac3H11_3433 0.25 -0.7
116,966 + Ac3H11_3433 0.27 +0.4
116,967 - Ac3H11_3433 0.27 +1.4
117,069 - Ac3H11_3433 0.35 +1.1
117,069 - Ac3H11_3433 0.35 +0.4
117,127 - Ac3H11_3433 0.40 -1.0
117,332 + Ac3H11_3433 0.57 -0.3
117,332 + Ac3H11_3433 0.57 +0.9
117,332 + Ac3H11_3433 0.57 -0.4
117,341 + Ac3H11_3433 0.58 +0.1
117,407 + Ac3H11_3433 0.63 +0.3
117,407 + Ac3H11_3433 0.63 +0.7
117,408 - Ac3H11_3433 0.63 +0.2
117,408 - Ac3H11_3433 0.63 +0.9
117,408 - Ac3H11_3433 0.63 +1.3
117,408 - Ac3H11_3433 0.63 -0.9
117,408 - Ac3H11_3433 0.63 +0.4
117,434 + Ac3H11_3433 0.65 +0.7
117,434 + Ac3H11_3433 0.65 -0.5
117,434 + Ac3H11_3433 0.65 -1.9
117,434 + Ac3H11_3433 0.65 +1.5
117,435 - Ac3H11_3433 0.66 +0.9
117,435 - Ac3H11_3433 0.66 -2.3
117,713 + Ac3H11_3433 0.88 -1.2
117,714 - Ac3H11_3433 0.89 +4.2
117,714 - Ac3H11_3433 0.89 -2.5
117,714 - Ac3H11_3433 0.89 -1.5
117,744 - -1.3
117,744 - +1.2
117,744 - -0.9
117,958 - -1.1
118,093 + Ac3H11_3434 0.27 +0.3
118,093 + Ac3H11_3434 0.27 +0.5
118,093 + Ac3H11_3434 0.27 +0.5
118,280 - Ac3H11_3434 0.59 +0.1
118,387 + Ac3H11_3434 0.78 +0.3
118,387 + Ac3H11_3434 0.78 -1.4
118,387 + Ac3H11_3434 0.78 -1.5
118,387 + Ac3H11_3434 0.78 -0.4
118,388 - Ac3H11_3434 0.78 -0.4
118,388 - Ac3H11_3434 0.78 +0.2
118,388 - Ac3H11_3434 0.78 +1.3
118,388 - Ac3H11_3434 0.78 +0.9
118,660 + Ac3H11_3435 0.14 -1.1
118,661 - Ac3H11_3435 0.14 -0.6
118,661 - Ac3H11_3435 0.14 +1.2
118,661 - Ac3H11_3435 0.14 +1.1
118,733 + Ac3H11_3435 0.25 -0.9
118,733 + Ac3H11_3435 0.25 -1.5
118,733 + Ac3H11_3435 0.25 +1.0
118,734 - Ac3H11_3435 0.25 +0.1
118,734 - Ac3H11_3435 0.25 -0.4
118,734 - Ac3H11_3435 0.25 +0.3
118,863 - Ac3H11_3435 0.45 -1.0
118,979 + Ac3H11_3435 0.63 +0.3
118,979 + Ac3H11_3435 0.63 +0.1
118,979 + Ac3H11_3435 0.63 -1.2
118,980 - Ac3H11_3435 0.63 +1.3
119,045 - Ac3H11_3435 0.74 -0.2
119,045 - Ac3H11_3435 0.74 +0.4
119,088 - Ac3H11_3435 0.80 +1.7
119,204 - -1.3
119,245 + +0.8
119,246 - -0.1

Or see this region's nucleotide sequence