Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3236

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3235 and Ac3H11_3236 are separated by 318 nucleotidesAc3H11_3236 and Ac3H11_3237 are separated by 20 nucleotidesAc3H11_3237 and Ac3H11_3238 are separated by 54 nucleotides Ac3H11_3235 - serine/threonine protein kinase, at 142,113 to 143,873 _3235 Ac3H11_3236 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 144,192 to 146,639 _3236 Ac3H11_3237 - Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family), at 146,660 to 147,472 _3237 Ac3H11_3238 - Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4), at 147,527 to 147,928 _3238 Position (kb) 144 145 146 147Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 143.377 kb on + strand, within Ac3H11_3235at 143.377 kb on + strand, within Ac3H11_3235at 143.377 kb on + strand, within Ac3H11_3235at 143.378 kb on - strand, within Ac3H11_3235at 143.378 kb on - strand, within Ac3H11_3235at 143.494 kb on + strand, within Ac3H11_3235at 143.677 kb on + strand, within Ac3H11_3235at 143.678 kb on - strand, within Ac3H11_3235at 143.678 kb on - strand, within Ac3H11_3235at 144.023 kb on + strandat 144.024 kb on - strandat 144.282 kb on + strandat 144.283 kb on - strandat 144.321 kb on + strandat 144.321 kb on + strandat 144.322 kb on - strandat 144.322 kb on - strandat 144.322 kb on - strandat 144.399 kb on + strandat 144.400 kb on - strandat 144.510 kb on + strand, within Ac3H11_3236at 144.639 kb on + strand, within Ac3H11_3236at 144.639 kb on + strand, within Ac3H11_3236at 144.640 kb on - strand, within Ac3H11_3236at 144.640 kb on - strand, within Ac3H11_3236at 145.032 kb on + strand, within Ac3H11_3236at 145.033 kb on - strand, within Ac3H11_3236at 145.071 kb on + strand, within Ac3H11_3236at 145.071 kb on + strand, within Ac3H11_3236at 145.270 kb on - strand, within Ac3H11_3236at 145.317 kb on + strand, within Ac3H11_3236at 145.641 kb on + strand, within Ac3H11_3236at 145.809 kb on + strand, within Ac3H11_3236at 145.809 kb on + strand, within Ac3H11_3236at 145.810 kb on - strand, within Ac3H11_3236at 145.812 kb on + strand, within Ac3H11_3236at 145.813 kb on - strand, within Ac3H11_3236at 145.813 kb on - strand, within Ac3H11_3236at 145.813 kb on - strand, within Ac3H11_3236at 145.813 kb on - strand, within Ac3H11_3236at 145.813 kb on - strand, within Ac3H11_3236at 145.813 kb on - strand, within Ac3H11_3236at 145.908 kb on + strand, within Ac3H11_3236at 145.908 kb on + strand, within Ac3H11_3236at 145.908 kb on + strand, within Ac3H11_3236at 145.909 kb on - strand, within Ac3H11_3236at 145.986 kb on + strand, within Ac3H11_3236at 145.986 kb on + strand, within Ac3H11_3236at 145.986 kb on + strand, within Ac3H11_3236at 145.987 kb on - strand, within Ac3H11_3236at 145.987 kb on - strand, within Ac3H11_3236at 145.987 kb on - strand, within Ac3H11_3236at 145.987 kb on - strand, within Ac3H11_3236at 145.987 kb on - strand, within Ac3H11_3236at 146.100 kb on + strand, within Ac3H11_3236at 146.214 kb on + strand, within Ac3H11_3236at 146.215 kb on - strand, within Ac3H11_3236at 146.215 kb on - strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.446 kb on - strandat 146.446 kb on - strandat 146.466 kb on + strandat 146.467 kb on - strandat 146.490 kb on + strandat 146.954 kb on + strand, within Ac3H11_3237at 146.954 kb on + strand, within Ac3H11_3237at 146.955 kb on - strand, within Ac3H11_3237at 146.955 kb on - strand, within Ac3H11_3237at 147.452 kb on + strandat 147.452 kb on + strandat 147.452 kb on + strandat 147.453 kb on - strandat 147.453 kb on - strandat 147.453 kb on - strandat 147.453 kb on - strandat 147.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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143,377 + Ac3H11_3235 0.72 +0.9
143,377 + Ac3H11_3235 0.72 -0.7
143,377 + Ac3H11_3235 0.72 +0.3
143,378 - Ac3H11_3235 0.72 +1.0
143,378 - Ac3H11_3235 0.72 -1.0
143,494 + Ac3H11_3235 0.78 -0.3
143,677 + Ac3H11_3235 0.89 -0.7
143,678 - Ac3H11_3235 0.89 +0.6
143,678 - Ac3H11_3235 0.89 +0.3
144,023 + -1.1
144,024 - +0.2
144,282 + -0.2
144,283 - +0.7
144,321 + -0.9
144,321 + -2.7
144,322 - +0.3
144,322 - +0.4
144,322 - -0.7
144,399 + -0.1
144,400 - -0.5
144,510 + Ac3H11_3236 0.13 -0.4
144,639 + Ac3H11_3236 0.18 -0.6
144,639 + Ac3H11_3236 0.18 +0.4
144,640 - Ac3H11_3236 0.18 +1.3
144,640 - Ac3H11_3236 0.18 -0.5
145,032 + Ac3H11_3236 0.34 +0.4
145,033 - Ac3H11_3236 0.34 -0.6
145,071 + Ac3H11_3236 0.36 +3.2
145,071 + Ac3H11_3236 0.36 +0.2
145,270 - Ac3H11_3236 0.44 -0.2
145,317 + Ac3H11_3236 0.46 -0.2
145,641 + Ac3H11_3236 0.59 -0.7
145,809 + Ac3H11_3236 0.66 -0.8
145,809 + Ac3H11_3236 0.66 -0.3
145,810 - Ac3H11_3236 0.66 +0.5
145,812 + Ac3H11_3236 0.66 +0.1
145,813 - Ac3H11_3236 0.66 +0.3
145,813 - Ac3H11_3236 0.66 +0.0
145,813 - Ac3H11_3236 0.66 +0.7
145,813 - Ac3H11_3236 0.66 +1.5
145,813 - Ac3H11_3236 0.66 -0.4
145,813 - Ac3H11_3236 0.66 -2.9
145,908 + Ac3H11_3236 0.70 -0.0
145,908 + Ac3H11_3236 0.70 -1.2
145,908 + Ac3H11_3236 0.70 +0.8
145,909 - Ac3H11_3236 0.70 +0.2
145,986 + Ac3H11_3236 0.73 +0.9
145,986 + Ac3H11_3236 0.73 +0.4
145,986 + Ac3H11_3236 0.73 +0.2
145,987 - Ac3H11_3236 0.73 +1.1
145,987 - Ac3H11_3236 0.73 -0.2
145,987 - Ac3H11_3236 0.73 -1.6
145,987 - Ac3H11_3236 0.73 +1.0
145,987 - Ac3H11_3236 0.73 -2.1
146,100 + Ac3H11_3236 0.78 -0.3
146,214 + Ac3H11_3236 0.83 -0.6
146,215 - Ac3H11_3236 0.83 +0.5
146,215 - Ac3H11_3236 0.83 +0.5
146,322 + Ac3H11_3236 0.87 -0.2
146,322 + Ac3H11_3236 0.87 -1.8
146,322 + Ac3H11_3236 0.87 +0.7
146,322 + Ac3H11_3236 0.87 -1.2
146,322 + Ac3H11_3236 0.87 +0.6
146,322 + Ac3H11_3236 0.87 -0.6
146,322 + Ac3H11_3236 0.87 +0.2
146,322 + Ac3H11_3236 0.87 +0.8
146,322 + Ac3H11_3236 0.87 -0.7
146,322 + Ac3H11_3236 0.87 -0.9
146,323 - Ac3H11_3236 0.87 +0.8
146,323 - Ac3H11_3236 0.87 +0.6
146,323 - Ac3H11_3236 0.87 -0.4
146,323 - Ac3H11_3236 0.87 -1.8
146,323 - Ac3H11_3236 0.87 +1.1
146,323 - Ac3H11_3236 0.87 -0.4
146,323 - Ac3H11_3236 0.87 +0.9
146,446 - +1.4
146,446 - +0.5
146,466 + -0.4
146,467 - -0.5
146,490 + -0.6
146,954 + Ac3H11_3237 0.36 -1.1
146,954 + Ac3H11_3237 0.36 +0.0
146,955 - Ac3H11_3237 0.36 +0.3
146,955 - Ac3H11_3237 0.36 -2.1
147,452 + +3.3
147,452 + -0.5
147,452 + -1.1
147,453 - +0.3
147,453 - +0.3
147,453 - +1.8
147,453 - -0.6
147,453 - +1.5

Or see this region's nucleotide sequence