Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2462

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2460 and Ac3H11_2461 overlap by 1 nucleotidesAc3H11_2461 and Ac3H11_2462 are separated by 155 nucleotidesAc3H11_2462 and Ac3H11_2463 are separated by 150 nucleotidesAc3H11_2463 and Ac3H11_2464 overlap by 4 nucleotides Ac3H11_2460 - DinG family ATP-dependent helicase YoaA, at 724,194 to 726,254 _2460 Ac3H11_2461 - hypothetical protein, at 726,254 to 726,409 _2461 Ac3H11_2462 - Protein phosphatase 2C-like, at 726,565 to 727,371 _2462 Ac3H11_2463 - Translation initiation factor 2 (IF-2; GTPase), at 727,522 to 728,226 _2463 Ac3H11_2464 - ATPase component BioM of energizing module of biotin ECF transporter, at 728,223 to 729,320 _2464 Position (kb) 726 727 728Strain fitness (log2 ratio) -2 -1 0 1 2at 725.908 kb on + strand, within Ac3H11_2460at 725.909 kb on - strand, within Ac3H11_2460at 725.909 kb on - strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.921 kb on - strand, within Ac3H11_2460at 725.921 kb on - strand, within Ac3H11_2460at 725.921 kb on - strand, within Ac3H11_2460at 725.921 kb on - strand, within Ac3H11_2460at 726.073 kb on + strandat 726.073 kb on + strandat 726.073 kb on + strandat 726.073 kb on + strandat 726.074 kb on - strandat 726.074 kb on - strandat 726.074 kb on - strandat 726.504 kb on - strandat 726.506 kb on + strandat 726.506 kb on + strandat 726.506 kb on + strandat 726.506 kb on + strandat 726.507 kb on - strandat 726.507 kb on - strandat 726.622 kb on + strandat 726.623 kb on - strandat 726.623 kb on - strandat 726.623 kb on - strandat 726.623 kb on - strandat 726.770 kb on - strand, within Ac3H11_2462at 726.828 kb on + strand, within Ac3H11_2462at 726.828 kb on + strand, within Ac3H11_2462at 726.828 kb on + strand, within Ac3H11_2462at 726.829 kb on - strand, within Ac3H11_2462at 726.946 kb on + strand, within Ac3H11_2462at 726.946 kb on + strand, within Ac3H11_2462at 726.946 kb on + strand, within Ac3H11_2462at 726.946 kb on + strand, within Ac3H11_2462at 726.947 kb on - strand, within Ac3H11_2462at 726.947 kb on - strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 727.174 kb on + strand, within Ac3H11_2462at 727.174 kb on + strand, within Ac3H11_2462at 727.174 kb on + strand, within Ac3H11_2462at 727.174 kb on + strand, within Ac3H11_2462at 727.174 kb on + strand, within Ac3H11_2462at 727.174 kb on + strand, within Ac3H11_2462at 727.175 kb on - strand, within Ac3H11_2462at 727.175 kb on - strand, within Ac3H11_2462at 727.175 kb on - strand, within Ac3H11_2462at 727.175 kb on - strand, within Ac3H11_2462at 727.175 kb on - strand, within Ac3H11_2462at 727.378 kb on + strandat 727.378 kb on + strandat 727.378 kb on + strandat 727.378 kb on + strandat 727.378 kb on + strandat 727.379 kb on - strandat 727.379 kb on - strandat 727.379 kb on - strandat 727.471 kb on + strandat 727.471 kb on + strandat 727.471 kb on + strandat 727.471 kb on + strandat 727.471 kb on + strandat 727.471 kb on + strandat 727.471 kb on + strandat 727.471 kb on + strandat 727.471 kb on + strandat 727.471 kb on + strandat 727.472 kb on - strandat 727.472 kb on - strandat 727.472 kb on - strandat 727.472 kb on - strandat 727.472 kb on - strandat 727.472 kb on - strandat 727.472 kb on - strandat 727.472 kb on - strandat 727.476 kb on + strandat 727.476 kb on + strandat 727.476 kb on + strandat 727.476 kb on + strandat 727.476 kb on + strandat 727.476 kb on + strandat 727.476 kb on + strandat 727.477 kb on - strandat 727.477 kb on - strandat 727.477 kb on - strandat 727.477 kb on - strandat 727.477 kb on - strandat 727.477 kb on - strandat 728.021 kb on + strand, within Ac3H11_2463at 728.021 kb on + strand, within Ac3H11_2463at 728.021 kb on + strand, within Ac3H11_2463at 728.021 kb on + strand, within Ac3H11_2463at 728.021 kb on + strand, within Ac3H11_2463at 728.021 kb on + strand, within Ac3H11_2463at 728.022 kb on - strand, within Ac3H11_2463at 728.022 kb on - strand, within Ac3H11_2463at 728.022 kb on - strand, within Ac3H11_2463at 728.022 kb on - strand, within Ac3H11_2463at 728.022 kb on - strand, within Ac3H11_2463at 728.202 kb on + strandat 728.202 kb on + strandat 728.203 kb on - strandat 728.203 kb on - strandat 728.203 kb on - strandat 728.339 kb on - strand, within Ac3H11_2464at 728.339 kb on - strand, within Ac3H11_2464

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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725,908 + Ac3H11_2460 0.83 -1.2
725,909 - Ac3H11_2460 0.83 -0.1
725,909 - Ac3H11_2460 0.83 -1.3
725,920 + Ac3H11_2460 0.84 +0.5
725,920 + Ac3H11_2460 0.84 +1.0
725,920 + Ac3H11_2460 0.84 +0.2
725,920 + Ac3H11_2460 0.84 -0.0
725,920 + Ac3H11_2460 0.84 +0.3
725,920 + Ac3H11_2460 0.84 +0.7
725,920 + Ac3H11_2460 0.84 -1.6
725,921 - Ac3H11_2460 0.84 +0.6
725,921 - Ac3H11_2460 0.84 -0.3
725,921 - Ac3H11_2460 0.84 -0.1
725,921 - Ac3H11_2460 0.84 -1.3
726,073 + -0.3
726,073 + -0.9
726,073 + -0.1
726,073 + -0.2
726,074 - -0.7
726,074 - -0.5
726,074 - +0.8
726,504 - -1.8
726,506 + +0.7
726,506 + +0.3
726,506 + -1.0
726,506 + +0.3
726,507 - +1.1
726,507 - -1.0
726,622 + +0.3
726,623 - +0.5
726,623 - +0.2
726,623 - -1.1
726,623 - -0.9
726,770 - Ac3H11_2462 0.25 -0.5
726,828 + Ac3H11_2462 0.33 -1.1
726,828 + Ac3H11_2462 0.33 +0.2
726,828 + Ac3H11_2462 0.33 +2.0
726,829 - Ac3H11_2462 0.33 -0.7
726,946 + Ac3H11_2462 0.47 +0.7
726,946 + Ac3H11_2462 0.47 -0.3
726,946 + Ac3H11_2462 0.47 +0.4
726,946 + Ac3H11_2462 0.47 -2.0
726,947 - Ac3H11_2462 0.47 -0.1
726,947 - Ac3H11_2462 0.47 +0.8
726,994 + Ac3H11_2462 0.53 +0.5
726,994 + Ac3H11_2462 0.53 +0.8
726,994 + Ac3H11_2462 0.53 +0.7
726,994 + Ac3H11_2462 0.53 -0.8
726,994 + Ac3H11_2462 0.53 -1.3
726,994 + Ac3H11_2462 0.53 -0.7
726,994 + Ac3H11_2462 0.53 +0.3
726,994 + Ac3H11_2462 0.53 -0.1
726,994 + Ac3H11_2462 0.53 +0.3
726,994 + Ac3H11_2462 0.53 -0.4
726,994 + Ac3H11_2462 0.53 +0.2
726,995 - Ac3H11_2462 0.53 -0.4
726,995 - Ac3H11_2462 0.53 +0.5
726,995 - Ac3H11_2462 0.53 +0.4
726,995 - Ac3H11_2462 0.53 -2.7
726,995 - Ac3H11_2462 0.53 +1.0
726,995 - Ac3H11_2462 0.53 +0.5
726,995 - Ac3H11_2462 0.53 -0.6
726,995 - Ac3H11_2462 0.53 -0.1
726,995 - Ac3H11_2462 0.53 +1.1
726,995 - Ac3H11_2462 0.53 -0.9
726,995 - Ac3H11_2462 0.53 -0.4
727,174 + Ac3H11_2462 0.75 -0.8
727,174 + Ac3H11_2462 0.75 +0.5
727,174 + Ac3H11_2462 0.75 +0.2
727,174 + Ac3H11_2462 0.75 +0.3
727,174 + Ac3H11_2462 0.75 -2.5
727,174 + Ac3H11_2462 0.75 -0.7
727,175 - Ac3H11_2462 0.76 +0.2
727,175 - Ac3H11_2462 0.76 -0.2
727,175 - Ac3H11_2462 0.76 +0.4
727,175 - Ac3H11_2462 0.76 -0.9
727,175 - Ac3H11_2462 0.76 -0.5
727,378 + +0.1
727,378 + +0.0
727,378 + +0.1
727,378 + +0.3
727,378 + -0.9
727,379 - -1.2
727,379 - -0.4
727,379 - +0.3
727,471 + +0.4
727,471 + -0.6
727,471 + +1.1
727,471 + -0.4
727,471 + -0.4
727,471 + +0.8
727,471 + +0.7
727,471 + -0.1
727,471 + +0.5
727,471 + -0.0
727,472 - +1.3
727,472 - -0.9
727,472 - -0.9
727,472 - -0.5
727,472 - -0.1
727,472 - +1.3
727,472 - -2.4
727,472 - -0.4
727,476 + +0.2
727,476 + +0.5
727,476 + +0.7
727,476 + -0.2
727,476 + -1.4
727,476 + +0.1
727,476 + +0.7
727,477 - -0.8
727,477 - +0.1
727,477 - +0.8
727,477 - -0.1
727,477 - -0.5
727,477 - -1.8
728,021 + Ac3H11_2463 0.71 +0.6
728,021 + Ac3H11_2463 0.71 +0.1
728,021 + Ac3H11_2463 0.71 -0.5
728,021 + Ac3H11_2463 0.71 -0.1
728,021 + Ac3H11_2463 0.71 -0.6
728,021 + Ac3H11_2463 0.71 +0.4
728,022 - Ac3H11_2463 0.71 -1.0
728,022 - Ac3H11_2463 0.71 +1.0
728,022 - Ac3H11_2463 0.71 -0.8
728,022 - Ac3H11_2463 0.71 +0.2
728,022 - Ac3H11_2463 0.71 -0.5
728,202 + +1.9
728,202 + -1.5
728,203 - -0.3
728,203 - +0.0
728,203 - +1.8
728,339 - Ac3H11_2464 0.11 -1.4
728,339 - Ac3H11_2464 0.11 +0.7

Or see this region's nucleotide sequence