Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1940 and Ac3H11_1941 are separated by 108 nucleotides Ac3H11_1941 and Ac3H11_1942 are separated by 181 nucleotides Ac3H11_1942 and Ac3H11_1943 overlap by 4 nucleotides
Ac3H11_1940 - Enoyl-CoA hydratase (EC 4.2.1.17), at 156,022 to 156,819
_1940
Ac3H11_1941 - putative protein PaaI, possibly involved in aromatic compounds catabolism, at 156,928 to 157,413
_1941
Ac3H11_1942 - Phenylacetic acid degradation protein paaI, at 157,595 to 158,053
_1942
Ac3H11_1943 - Cu(I)-responsive transcriptional regulator, at 158,050 to 158,505
_1943
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 155.978 kb on - strand at 155.984 kb on + strand at 155.984 kb on + strand at 155.984 kb on + strand at 155.985 kb on - strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.998 kb on - strand at 155.998 kb on - strand at 155.998 kb on - strand at 155.998 kb on - strand at 155.998 kb on - strand at 155.999 kb on + strand at 155.999 kb on + strand at 156.000 kb on - strand at 156.029 kb on + strand at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.431 kb on - strand, within Ac3H11_1940 at 156.858 kb on + strand at 156.863 kb on - strand at 157.105 kb on + strand, within Ac3H11_1941 at 157.105 kb on + strand, within Ac3H11_1941 at 157.112 kb on - strand, within Ac3H11_1941 at 157.267 kb on + strand, within Ac3H11_1941 at 157.268 kb on - strand, within Ac3H11_1941 at 157.268 kb on - strand, within Ac3H11_1941 at 157.268 kb on - strand, within Ac3H11_1941 at 157.268 kb on - strand, within Ac3H11_1941 at 157.399 kb on + strand at 157.399 kb on + strand at 157.399 kb on + strand at 157.399 kb on + strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.418 kb on + strand at 157.419 kb on - strand at 157.487 kb on + strand at 157.487 kb on + strand at 157.488 kb on - strand at 157.496 kb on + strand at 157.496 kb on + strand at 157.496 kb on + strand at 157.497 kb on - strand at 157.497 kb on - strand at 157.497 kb on - strand at 157.497 kb on - strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.501 kb on - strand at 157.501 kb on - strand at 157.506 kb on + strand at 157.507 kb on - strand at 157.860 kb on + strand, within Ac3H11_1942 at 157.861 kb on - strand, within Ac3H11_1942 at 157.861 kb on - strand, within Ac3H11_1942 at 157.946 kb on - strand, within Ac3H11_1942 at 158.330 kb on - strand, within Ac3H11_1943
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 155,978 - -1.1 155,984 + -0.7 155,984 + +0.1 155,984 + -1.1 155,985 - +1.1 155,997 + -0.1 155,997 + +0.2 155,997 + -0.4 155,997 + +0.9 155,997 + +1.3 155,997 + +1.3 155,997 + +1.2 155,997 + -0.7 155,997 + -2.1 155,998 - +0.1 155,998 - -1.2 155,998 - +1.1 155,998 - +3.2 155,998 - +0.9 155,999 + -0.4 155,999 + -0.4 156,000 - +1.0 156,029 + +2.1 156,430 + Ac3H11_1940 0.51 -0.1 156,430 + Ac3H11_1940 0.51 -0.7 156,430 + Ac3H11_1940 0.51 +1.0 156,430 + Ac3H11_1940 0.51 +0.1 156,430 + Ac3H11_1940 0.51 +0.8 156,430 + Ac3H11_1940 0.51 +0.9 156,431 - Ac3H11_1940 0.51 -2.2 156,858 + +1.1 156,863 - -1.0 157,105 + Ac3H11_1941 0.36 +0.8 157,105 + Ac3H11_1941 0.36 +0.3 157,112 - Ac3H11_1941 0.38 +0.5 157,267 + Ac3H11_1941 0.70 +0.6 157,268 - Ac3H11_1941 0.70 +0.2 157,268 - Ac3H11_1941 0.70 +0.6 157,268 - Ac3H11_1941 0.70 +0.2 157,268 - Ac3H11_1941 0.70 +0.9 157,399 + -0.4 157,399 + -0.4 157,399 + -0.1 157,399 + -0.8 157,400 - +1.2 157,400 - +0.6 157,400 - +0.2 157,400 - -0.2 157,418 + -0.4 157,419 - +0.4 157,487 + +0.8 157,487 + +1.1 157,488 - +1.6 157,496 + +0.4 157,496 + -1.5 157,496 + -0.2 157,497 - -0.0 157,497 - +1.0 157,497 - +1.4 157,497 - -1.6 157,500 + -0.0 157,500 + -0.4 157,500 + -2.3 157,500 + +0.1 157,500 + -0.6 157,500 + +0.6 157,500 + +0.6 157,501 - -0.1 157,501 - +0.3 157,506 + +0.9 157,507 - +0.9 157,860 + Ac3H11_1942 0.58 -1.5 157,861 - Ac3H11_1942 0.58 -0.8 157,861 - Ac3H11_1942 0.58 -0.2 157,946 - Ac3H11_1942 0.76 -0.5 158,330 - Ac3H11_1943 0.61 -0.4
Or see this region's nucleotide sequence