Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1335

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1333 and Ac3H11_1334 are separated by 126 nucleotidesAc3H11_1334 and Ac3H11_1335 are separated by 90 nucleotidesAc3H11_1335 and Ac3H11_1336 are separated by 14 nucleotides Ac3H11_1333 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 21,637 to 22,623 _1333 Ac3H11_1334 - hypothetical protein, at 22,750 to 23,430 _1334 Ac3H11_1335 - hypothetical protein, at 23,521 to 23,763 _1335 Ac3H11_1336 - Ferrous iron transport protein B, at 23,778 to 25,703 _1336 Position (kb) 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 22.779 kb on + strandat 22.780 kb on - strandat 22.780 kb on - strandat 22.780 kb on - strandat 22.894 kb on + strand, within Ac3H11_1334at 22.895 kb on - strand, within Ac3H11_1334at 23.017 kb on + strand, within Ac3H11_1334at 23.017 kb on + strand, within Ac3H11_1334at 23.018 kb on - strand, within Ac3H11_1334at 23.018 kb on - strand, within Ac3H11_1334at 23.018 kb on - strand, within Ac3H11_1334at 23.018 kb on - strand, within Ac3H11_1334at 23.018 kb on - strand, within Ac3H11_1334at 23.222 kb on - strand, within Ac3H11_1334at 23.222 kb on - strand, within Ac3H11_1334at 23.222 kb on - strand, within Ac3H11_1334at 23.222 kb on - strand, within Ac3H11_1334at 23.222 kb on - strand, within Ac3H11_1334at 23.254 kb on + strand, within Ac3H11_1334at 23.254 kb on + strand, within Ac3H11_1334at 23.254 kb on + strand, within Ac3H11_1334at 23.278 kb on + strand, within Ac3H11_1334at 23.278 kb on + strand, within Ac3H11_1334at 23.278 kb on + strand, within Ac3H11_1334at 23.278 kb on + strand, within Ac3H11_1334at 23.332 kb on + strand, within Ac3H11_1334at 23.332 kb on + strand, within Ac3H11_1334at 23.332 kb on + strand, within Ac3H11_1334at 23.332 kb on + strand, within Ac3H11_1334at 23.333 kb on - strand, within Ac3H11_1334at 23.333 kb on - strand, within Ac3H11_1334at 23.359 kb on + strand, within Ac3H11_1334at 23.360 kb on - strand, within Ac3H11_1334at 23.484 kb on + strandat 23.502 kb on - strandat 23.714 kb on + strand, within Ac3H11_1335at 23.714 kb on + strand, within Ac3H11_1335at 23.714 kb on + strand, within Ac3H11_1335at 23.714 kb on + strand, within Ac3H11_1335at 23.714 kb on + strand, within Ac3H11_1335at 23.714 kb on + strand, within Ac3H11_1335at 23.715 kb on - strand, within Ac3H11_1335at 23.764 kb on - strandat 23.809 kb on + strandat 23.810 kb on - strandat 23.810 kb on - strandat 23.810 kb on - strandat 23.830 kb on + strandat 23.831 kb on - strandat 23.831 kb on - strandat 23.848 kb on + strandat 23.848 kb on + strandat 23.849 kb on - strandat 23.849 kb on - strandat 23.849 kb on - strandat 23.935 kb on + strandat 23.935 kb on + strandat 23.935 kb on + strandat 23.935 kb on + strandat 23.935 kb on + strandat 23.936 kb on - strandat 23.936 kb on - strandat 23.936 kb on - strandat 23.936 kb on - strandat 23.936 kb on - strandat 23.936 kb on - strandat 23.936 kb on - strandat 24.034 kb on + strand, within Ac3H11_1336at 24.035 kb on - strand, within Ac3H11_1336at 24.035 kb on - strand, within Ac3H11_1336at 24.035 kb on - strand, within Ac3H11_1336at 24.169 kb on + strand, within Ac3H11_1336at 24.169 kb on + strand, within Ac3H11_1336at 24.169 kb on + strand, within Ac3H11_1336at 24.169 kb on + strand, within Ac3H11_1336at 24.170 kb on - strand, within Ac3H11_1336at 24.170 kb on - strand, within Ac3H11_1336at 24.170 kb on - strand, within Ac3H11_1336at 24.170 kb on - strand, within Ac3H11_1336at 24.170 kb on - strand, within Ac3H11_1336at 24.211 kb on + strand, within Ac3H11_1336at 24.211 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.431 kb on - strand, within Ac3H11_1336at 24.431 kb on - strand, within Ac3H11_1336at 24.431 kb on - strand, within Ac3H11_1336at 24.514 kb on + strand, within Ac3H11_1336at 24.514 kb on + strand, within Ac3H11_1336at 24.514 kb on + strand, within Ac3H11_1336at 24.514 kb on + strand, within Ac3H11_1336at 24.515 kb on - strand, within Ac3H11_1336at 24.515 kb on - strand, within Ac3H11_1336at 24.515 kb on - strand, within Ac3H11_1336at 24.515 kb on - strand, within Ac3H11_1336at 24.515 kb on - strand, within Ac3H11_1336at 24.515 kb on - strand, within Ac3H11_1336

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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22,779 + +0.4
22,780 - +0.7
22,780 - +0.6
22,780 - -0.1
22,894 + Ac3H11_1334 0.21 +0.4
22,895 - Ac3H11_1334 0.21 -1.6
23,017 + Ac3H11_1334 0.39 +1.0
23,017 + Ac3H11_1334 0.39 +0.6
23,018 - Ac3H11_1334 0.39 -0.2
23,018 - Ac3H11_1334 0.39 -0.6
23,018 - Ac3H11_1334 0.39 -1.1
23,018 - Ac3H11_1334 0.39 +0.4
23,018 - Ac3H11_1334 0.39 +1.7
23,222 - Ac3H11_1334 0.69 -1.1
23,222 - Ac3H11_1334 0.69 -0.2
23,222 - Ac3H11_1334 0.69 -1.1
23,222 - Ac3H11_1334 0.69 +0.3
23,222 - Ac3H11_1334 0.69 +0.1
23,254 + Ac3H11_1334 0.74 -0.8
23,254 + Ac3H11_1334 0.74 +0.2
23,254 + Ac3H11_1334 0.74 -0.4
23,278 + Ac3H11_1334 0.78 +1.3
23,278 + Ac3H11_1334 0.78 +0.9
23,278 + Ac3H11_1334 0.78 +1.1
23,278 + Ac3H11_1334 0.78 +0.4
23,332 + Ac3H11_1334 0.85 -0.4
23,332 + Ac3H11_1334 0.85 +0.0
23,332 + Ac3H11_1334 0.85 -1.7
23,332 + Ac3H11_1334 0.85 -0.6
23,333 - Ac3H11_1334 0.86 +1.3
23,333 - Ac3H11_1334 0.86 +0.4
23,359 + Ac3H11_1334 0.89 -0.6
23,360 - Ac3H11_1334 0.90 +0.4
23,484 + +2.2
23,502 - +1.0
23,714 + Ac3H11_1335 0.79 +0.4
23,714 + Ac3H11_1335 0.79 -0.4
23,714 + Ac3H11_1335 0.79 +0.7
23,714 + Ac3H11_1335 0.79 +0.9
23,714 + Ac3H11_1335 0.79 -0.8
23,714 + Ac3H11_1335 0.79 -0.9
23,715 - Ac3H11_1335 0.80 +1.8
23,764 - -0.6
23,809 + +1.3
23,810 - +0.5
23,810 - +0.3
23,810 - +0.3
23,830 + -0.4
23,831 - -0.7
23,831 - +1.1
23,848 + -1.2
23,848 + -1.2
23,849 - -1.0
23,849 - +1.7
23,849 - +1.0
23,935 + -0.7
23,935 + +1.1
23,935 + -0.5
23,935 + +2.1
23,935 + -0.0
23,936 - +0.3
23,936 - +0.6
23,936 - +2.2
23,936 - +0.7
23,936 - -0.3
23,936 - -1.4
23,936 - +0.3
24,034 + Ac3H11_1336 0.13 +0.0
24,035 - Ac3H11_1336 0.13 -0.6
24,035 - Ac3H11_1336 0.13 +1.0
24,035 - Ac3H11_1336 0.13 +0.5
24,169 + Ac3H11_1336 0.20 +0.5
24,169 + Ac3H11_1336 0.20 +0.8
24,169 + Ac3H11_1336 0.20 +0.5
24,169 + Ac3H11_1336 0.20 -0.4
24,170 - Ac3H11_1336 0.20 +1.1
24,170 - Ac3H11_1336 0.20 +0.0
24,170 - Ac3H11_1336 0.20 +0.7
24,170 - Ac3H11_1336 0.20 -0.2
24,170 - Ac3H11_1336 0.20 -1.0
24,211 + Ac3H11_1336 0.22 -1.7
24,211 + Ac3H11_1336 0.22 -0.9
24,430 + Ac3H11_1336 0.34 -1.1
24,430 + Ac3H11_1336 0.34 +0.7
24,430 + Ac3H11_1336 0.34 +1.3
24,430 + Ac3H11_1336 0.34 -0.1
24,430 + Ac3H11_1336 0.34 -0.4
24,430 + Ac3H11_1336 0.34 -0.1
24,430 + Ac3H11_1336 0.34 -0.3
24,430 + Ac3H11_1336 0.34 -0.5
24,430 + Ac3H11_1336 0.34 -1.3
24,430 + Ac3H11_1336 0.34 -0.3
24,431 - Ac3H11_1336 0.34 +1.3
24,431 - Ac3H11_1336 0.34 -1.9
24,431 - Ac3H11_1336 0.34 -0.0
24,514 + Ac3H11_1336 0.38 +0.5
24,514 + Ac3H11_1336 0.38 +0.1
24,514 + Ac3H11_1336 0.38 -1.0
24,514 + Ac3H11_1336 0.38 -2.3
24,515 - Ac3H11_1336 0.38 -1.7
24,515 - Ac3H11_1336 0.38 +0.5
24,515 - Ac3H11_1336 0.38 +1.2
24,515 - Ac3H11_1336 0.38 -0.4
24,515 - Ac3H11_1336 0.38 -0.9
24,515 - Ac3H11_1336 0.38 -0.3

Or see this region's nucleotide sequence