Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27345

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27330 and AO353_27335 overlap by 4 nucleotidesAO353_27335 and AO353_27340 are separated by 2 nucleotidesAO353_27340 and AO353_27345 are separated by 1 nucleotidesAO353_27345 and AO353_27350 are separated by 12 nucleotidesAO353_27350 and AO353_27355 are separated by 12 nucleotides AO353_27330: AO353_27330 - hypothetical protein, at 5,973,666 to 5,974,331 _27330 AO353_27335: AO353_27335 - hypothetical protein, at 5,974,328 to 5,974,642 _27335 AO353_27340: AO353_27340 - hypothetical protein, at 5,974,645 to 5,974,869 _27340 AO353_27345: AO353_27345 - capsid protein, at 5,974,871 to 5,975,899 _27345 AO353_27350: AO353_27350 - hypothetical protein, at 5,975,912 to 5,976,262 _27350 AO353_27355: AO353_27355 - hypothetical protein, at 5,976,275 to 5,977,507 _27355 Position (kb) 5974 5975 5976Strain fitness (log2 ratio) -2 -1 0 1at 5973.946 kb on + strand, within AO353_27330at 5973.947 kb on - strand, within AO353_27330at 5973.947 kb on - strand, within AO353_27330at 5973.947 kb on - strand, within AO353_27330at 5973.952 kb on + strand, within AO353_27330at 5973.958 kb on + strand, within AO353_27330at 5973.959 kb on - strand, within AO353_27330at 5973.974 kb on - strand, within AO353_27330at 5973.993 kb on + strand, within AO353_27330at 5974.109 kb on + strand, within AO353_27330at 5974.109 kb on + strand, within AO353_27330at 5974.109 kb on + strand, within AO353_27330at 5974.113 kb on + strand, within AO353_27330at 5974.114 kb on - strand, within AO353_27330at 5974.114 kb on - strand, within AO353_27330at 5974.166 kb on + strand, within AO353_27330at 5974.167 kb on - strand, within AO353_27330at 5974.347 kb on - strandat 5974.379 kb on + strand, within AO353_27335at 5974.379 kb on + strand, within AO353_27335at 5974.380 kb on - strand, within AO353_27335at 5974.380 kb on - strand, within AO353_27335at 5974.395 kb on + strand, within AO353_27335at 5974.646 kb on + strandat 5974.647 kb on - strandat 5974.791 kb on - strand, within AO353_27340at 5974.791 kb on - strand, within AO353_27340at 5974.887 kb on + strandat 5974.887 kb on + strandat 5974.888 kb on - strandat 5974.888 kb on - strandat 5974.888 kb on - strandat 5975.040 kb on + strand, within AO353_27345at 5975.040 kb on + strand, within AO353_27345at 5975.041 kb on - strand, within AO353_27345at 5975.047 kb on + strand, within AO353_27345at 5975.047 kb on + strand, within AO353_27345at 5975.048 kb on - strand, within AO353_27345at 5975.048 kb on - strand, within AO353_27345at 5975.048 kb on - strand, within AO353_27345at 5975.048 kb on - strand, within AO353_27345at 5975.048 kb on - strand, within AO353_27345at 5975.048 kb on - strand, within AO353_27345at 5975.127 kb on + strand, within AO353_27345at 5975.128 kb on - strand, within AO353_27345at 5975.139 kb on + strand, within AO353_27345at 5975.140 kb on - strand, within AO353_27345at 5975.145 kb on + strand, within AO353_27345at 5975.182 kb on - strand, within AO353_27345at 5975.182 kb on - strand, within AO353_27345at 5975.182 kb on - strand, within AO353_27345at 5975.252 kb on + strand, within AO353_27345at 5975.253 kb on - strand, within AO353_27345at 5975.662 kb on + strand, within AO353_27345at 5975.663 kb on - strand, within AO353_27345at 5975.663 kb on - strand, within AO353_27345at 5975.664 kb on + strand, within AO353_27345at 5975.664 kb on + strand, within AO353_27345at 5975.664 kb on + strand, within AO353_27345at 5975.664 kb on + strand, within AO353_27345at 5975.665 kb on - strand, within AO353_27345at 5975.665 kb on - strand, within AO353_27345at 5975.665 kb on - strand, within AO353_27345at 5975.665 kb on - strand, within AO353_27345at 5975.665 kb on - strand, within AO353_27345at 5975.676 kb on + strand, within AO353_27345at 5975.676 kb on + strand, within AO353_27345at 5975.676 kb on + strand, within AO353_27345at 5975.677 kb on - strand, within AO353_27345at 5975.677 kb on - strand, within AO353_27345at 5975.677 kb on - strand, within AO353_27345at 5975.677 kb on - strand, within AO353_27345at 5975.677 kb on - strand, within AO353_27345at 5975.691 kb on + strand, within AO353_27345at 5975.692 kb on - strand, within AO353_27345at 5975.692 kb on - strand, within AO353_27345at 5975.893 kb on + strandat 5976.117 kb on + strand, within AO353_27350at 5976.117 kb on + strand, within AO353_27350at 5976.117 kb on + strand, within AO353_27350at 5976.118 kb on - strand, within AO353_27350at 5976.118 kb on - strand, within AO353_27350at 5976.160 kb on + strand, within AO353_27350at 5976.237 kb on + strandat 5976.237 kb on + strandat 5976.237 kb on + strandat 5976.237 kb on + strandat 5976.237 kb on + strandat 5976.237 kb on + strandat 5976.237 kb on + strandat 5976.237 kb on + strandat 5976.237 kb on + strandat 5976.238 kb on - strandat 5976.238 kb on - strandat 5976.238 kb on - strandat 5976.238 kb on - strandat 5976.238 kb on - strandat 5976.312 kb on - strandat 5976.421 kb on + strand, within AO353_27355at 5976.421 kb on + strand, within AO353_27355at 5976.422 kb on - strand, within AO353_27355at 5976.788 kb on + strand, within AO353_27355at 5976.788 kb on + strand, within AO353_27355at 5976.788 kb on + strandat 5976.788 kb on + strand, within AO353_27355at 5976.788 kb on + strand, within AO353_27355at 5976.789 kb on - strand, within AO353_27355

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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5,973,946 + AO353_27330 0.42 +0.3
5,973,947 - AO353_27330 0.42 +0.4
5,973,947 - AO353_27330 0.42 +0.3
5,973,947 - AO353_27330 0.42 -0.3
5,973,952 + AO353_27330 0.43 +0.0
5,973,958 + AO353_27330 0.44 +1.3
5,973,959 - AO353_27330 0.44 +0.5
5,973,974 - AO353_27330 0.46 -1.4
5,973,993 + AO353_27330 0.49 +0.3
5,974,109 + AO353_27330 0.67 -0.3
5,974,109 + AO353_27330 0.67 -1.0
5,974,109 + AO353_27330 0.67 +0.2
5,974,113 + AO353_27330 0.67 +0.6
5,974,114 - AO353_27330 0.67 -1.1
5,974,114 - AO353_27330 0.67 +0.1
5,974,166 + AO353_27330 0.75 -0.1
5,974,167 - AO353_27330 0.75 +0.5
5,974,347 - -1.4
5,974,379 + AO353_27335 0.16 +0.7
5,974,379 + AO353_27335 0.16 +1.0
5,974,380 - AO353_27335 0.17 -2.3
5,974,380 - AO353_27335 0.17 -0.1
5,974,395 + AO353_27335 0.21 -0.4
5,974,646 + -1.4
5,974,647 - -1.3
5,974,791 - AO353_27340 0.65 -0.5
5,974,791 - AO353_27340 0.65 -0.5
5,974,887 + -0.3
5,974,887 + +0.5
5,974,888 - -0.8
5,974,888 - +0.2
5,974,888 - -0.1
5,975,040 + AO353_27345 0.16 +0.5
5,975,040 + AO353_27345 0.16 +0.2
5,975,041 - AO353_27345 0.17 -0.3
5,975,047 + AO353_27345 0.17 -1.0
5,975,047 + AO353_27345 0.17 +0.7
5,975,048 - AO353_27345 0.17 +0.7
5,975,048 - AO353_27345 0.17 -0.7
5,975,048 - AO353_27345 0.17 -0.5
5,975,048 - AO353_27345 0.17 +0.3
5,975,048 - AO353_27345 0.17 +1.0
5,975,048 - AO353_27345 0.17 -1.0
5,975,127 + AO353_27345 0.25 +1.3
5,975,128 - AO353_27345 0.25 +0.3
5,975,139 + AO353_27345 0.26 -0.2
5,975,140 - AO353_27345 0.26 +1.0
5,975,145 + AO353_27345 0.27 -0.0
5,975,182 - AO353_27345 0.30 +0.2
5,975,182 - AO353_27345 0.30 +0.6
5,975,182 - AO353_27345 0.30 -1.1
5,975,252 + AO353_27345 0.37 +0.3
5,975,253 - AO353_27345 0.37 -0.1
5,975,662 + AO353_27345 0.77 -1.2
5,975,663 - AO353_27345 0.77 -1.1
5,975,663 - AO353_27345 0.77 +0.2
5,975,664 + AO353_27345 0.77 -1.3
5,975,664 + AO353_27345 0.77 -0.4
5,975,664 + AO353_27345 0.77 -0.5
5,975,664 + AO353_27345 0.77 +0.4
5,975,665 - AO353_27345 0.77 -0.8
5,975,665 - AO353_27345 0.77 +0.2
5,975,665 - AO353_27345 0.77 +0.2
5,975,665 - AO353_27345 0.77 -0.4
5,975,665 - AO353_27345 0.77 -0.8
5,975,676 + AO353_27345 0.78 -0.4
5,975,676 + AO353_27345 0.78 -0.8
5,975,676 + AO353_27345 0.78 -1.3
5,975,677 - AO353_27345 0.78 +1.6
5,975,677 - AO353_27345 0.78 -0.3
5,975,677 - AO353_27345 0.78 -0.5
5,975,677 - AO353_27345 0.78 -1.0
5,975,677 - AO353_27345 0.78 -0.4
5,975,691 + AO353_27345 0.80 -1.8
5,975,692 - AO353_27345 0.80 -0.1
5,975,692 - AO353_27345 0.80 +0.2
5,975,893 + -0.2
5,976,117 + AO353_27350 0.58 -0.6
5,976,117 + AO353_27350 0.58 -0.7
5,976,117 + AO353_27350 0.58 +1.3
5,976,118 - AO353_27350 0.59 -1.7
5,976,118 - AO353_27350 0.59 +0.4
5,976,160 + AO353_27350 0.71 +1.1
5,976,237 + +1.2
5,976,237 + -0.9
5,976,237 + +1.3
5,976,237 + -0.3
5,976,237 + +1.0
5,976,237 + -0.2
5,976,237 + -0.1
5,976,237 + -0.7
5,976,237 + -0.7
5,976,238 - +0.2
5,976,238 - -0.3
5,976,238 - +0.8
5,976,238 - -2.5
5,976,238 - -0.8
5,976,312 - +0.9
5,976,421 + AO353_27355 0.12 -1.0
5,976,421 + AO353_27355 0.12 +0.7
5,976,422 - AO353_27355 0.12 +0.5
5,976,788 + AO353_27355 0.42 -0.4
5,976,788 + AO353_27355 0.42 -0.6
5,976,788 + +1.6
5,976,788 + AO353_27355 0.42 -1.4
5,976,788 + AO353_27355 0.42 +0.3
5,976,789 - AO353_27355 0.42 -2.1

Or see this region's nucleotide sequence