Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23775

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_23770 and AO353_23775 are separated by 13 nucleotidesAO353_23775 and AO353_23780 are separated by 553 nucleotides AO353_23770: AO353_23770 - malto-oligosyltrehalose trehalohydrolase, at 5,213,616 to 5,215,421 _23770 AO353_23775: AO353_23775 - glycogen synthase, at 5,215,435 to 5,217,003 _23775 AO353_23780: AO353_23780 - hydroxyacid dehydrogenase, at 5,217,557 to 5,218,510 _23780 Position (kb) 5215 5216 5217 5218Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5214.436 kb on + strand, within AO353_23770at 5214.436 kb on + strand, within AO353_23770at 5214.436 kb on + strand, within AO353_23770at 5214.437 kb on - strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.440 kb on - strand, within AO353_23770at 5214.440 kb on - strand, within AO353_23770at 5214.440 kb on - strand, within AO353_23770at 5214.671 kb on - strand, within AO353_23770at 5214.787 kb on + strand, within AO353_23770at 5214.799 kb on + strand, within AO353_23770at 5214.826 kb on + strand, within AO353_23770at 5214.827 kb on - strand, within AO353_23770at 5214.827 kb on - strand, within AO353_23770at 5214.827 kb on - strand, within AO353_23770at 5214.827 kb on - strand, within AO353_23770at 5214.904 kb on + strand, within AO353_23770at 5214.904 kb on + strand, within AO353_23770at 5214.904 kb on + strand, within AO353_23770at 5214.905 kb on - strand, within AO353_23770at 5214.950 kb on + strand, within AO353_23770at 5215.072 kb on + strandat 5215.073 kb on - strand, within AO353_23770at 5215.222 kb on + strand, within AO353_23770at 5215.222 kb on + strand, within AO353_23770at 5215.223 kb on - strand, within AO353_23770at 5215.481 kb on + strandat 5215.481 kb on + strandat 5215.481 kb on + strandat 5215.494 kb on - strandat 5215.607 kb on + strand, within AO353_23775at 5215.607 kb on + strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.819 kb on + strand, within AO353_23775at 5215.820 kb on - strand, within AO353_23775at 5215.820 kb on - strand, within AO353_23775at 5215.820 kb on - strand, within AO353_23775at 5215.820 kb on - strand, within AO353_23775at 5215.965 kb on - strand, within AO353_23775at 5216.205 kb on + strand, within AO353_23775at 5216.205 kb on + strand, within AO353_23775at 5216.206 kb on - strand, within AO353_23775at 5216.222 kb on + strand, within AO353_23775at 5216.222 kb on + strand, within AO353_23775at 5216.222 kb on + strand, within AO353_23775at 5216.222 kb on + strand, within AO353_23775at 5216.223 kb on - strand, within AO353_23775at 5216.244 kb on + strand, within AO353_23775at 5216.244 kb on + strand, within AO353_23775at 5216.245 kb on - strand, within AO353_23775at 5216.245 kb on - strand, within AO353_23775at 5216.245 kb on - strand, within AO353_23775at 5216.245 kb on - strand, within AO353_23775at 5216.255 kb on + strand, within AO353_23775at 5216.256 kb on - strand, within AO353_23775at 5216.292 kb on - strand, within AO353_23775at 5216.332 kb on - strand, within AO353_23775at 5216.372 kb on + strand, within AO353_23775at 5216.373 kb on - strand, within AO353_23775at 5216.373 kb on - strandat 5216.382 kb on + strand, within AO353_23775at 5216.382 kb on + strand, within AO353_23775at 5216.383 kb on - strand, within AO353_23775at 5216.429 kb on + strand, within AO353_23775at 5216.429 kb on + strand, within AO353_23775at 5216.429 kb on + strand, within AO353_23775at 5216.430 kb on - strand, within AO353_23775at 5216.430 kb on - strand, within AO353_23775at 5216.430 kb on - strand, within AO353_23775at 5216.430 kb on - strand, within AO353_23775at 5216.606 kb on + strand, within AO353_23775at 5216.606 kb on + strand, within AO353_23775at 5216.607 kb on - strandat 5216.630 kb on + strand, within AO353_23775at 5216.630 kb on + strand, within AO353_23775at 5216.630 kb on + strand, within AO353_23775at 5216.630 kb on + strand, within AO353_23775at 5216.630 kb on + strand, within AO353_23775at 5216.630 kb on + strand, within AO353_23775at 5216.630 kb on + strand, within AO353_23775at 5216.630 kb on + strand, within AO353_23775at 5216.630 kb on + strand, within AO353_23775at 5216.631 kb on - strand, within AO353_23775at 5216.631 kb on - strand, within AO353_23775at 5216.631 kb on - strandat 5216.986 kb on + strandat 5216.986 kb on + strandat 5217.019 kb on + strandat 5217.019 kb on + strandat 5217.090 kb on + strandat 5217.139 kb on + strandat 5217.139 kb on + strandat 5217.139 kb on + strandat 5217.140 kb on - strandat 5217.140 kb on - strandat 5217.140 kb on - strandat 5217.140 kb on - strandat 5217.140 kb on - strandat 5217.142 kb on + strandat 5217.143 kb on - strandat 5217.267 kb on + strandat 5217.267 kb on + strandat 5217.268 kb on - strandat 5217.268 kb on - strandat 5217.279 kb on + strandat 5217.279 kb on + strandat 5217.280 kb on - strandat 5217.454 kb on - strandat 5217.454 kb on - strandat 5217.496 kb on + strandat 5217.497 kb on - strandat 5217.517 kb on + strandat 5217.529 kb on + strandat 5217.558 kb on + strandat 5217.558 kb on + strandat 5217.601 kb on + strandat 5217.602 kb on - strandat 5217.651 kb on + strandat 5217.652 kb on - strandat 5217.652 kb on - strandat 5217.674 kb on + strand, within AO353_23780at 5217.674 kb on + strand, within AO353_23780at 5217.675 kb on - strand, within AO353_23780at 5217.675 kb on - strand, within AO353_23780at 5217.675 kb on - strand, within AO353_23780at 5217.675 kb on - strand, within AO353_23780at 5217.675 kb on - strand, within AO353_23780at 5217.946 kb on + strand, within AO353_23780at 5217.947 kb on - strand, within AO353_23780

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
5,214,436 + AO353_23770 0.45 -0.8
5,214,436 + AO353_23770 0.45 +1.0
5,214,436 + AO353_23770 0.45 -0.7
5,214,437 - AO353_23770 0.45 -0.0
5,214,439 + AO353_23770 0.46 -0.9
5,214,439 + AO353_23770 0.46 +0.9
5,214,439 + AO353_23770 0.46 -0.5
5,214,439 + AO353_23770 0.46 +0.7
5,214,439 + AO353_23770 0.46 +0.1
5,214,440 - AO353_23770 0.46 +0.5
5,214,440 - AO353_23770 0.46 -1.2
5,214,440 - AO353_23770 0.46 +1.0
5,214,671 - AO353_23770 0.58 -1.1
5,214,787 + AO353_23770 0.65 -0.2
5,214,799 + AO353_23770 0.66 +1.0
5,214,826 + AO353_23770 0.67 +0.8
5,214,827 - AO353_23770 0.67 -1.1
5,214,827 - AO353_23770 0.67 -0.3
5,214,827 - AO353_23770 0.67 +2.1
5,214,827 - AO353_23770 0.67 +0.6
5,214,904 + AO353_23770 0.71 +0.4
5,214,904 + AO353_23770 0.71 +0.9
5,214,904 + AO353_23770 0.71 -0.5
5,214,905 - AO353_23770 0.71 +0.7
5,214,950 + AO353_23770 0.74 +0.3
5,215,072 + -0.9
5,215,073 - AO353_23770 0.81 +0.5
5,215,222 + AO353_23770 0.89 +0.9
5,215,222 + AO353_23770 0.89 -0.7
5,215,223 - AO353_23770 0.89 +0.8
5,215,481 + -0.0
5,215,481 + +1.4
5,215,481 + +2.1
5,215,494 - +4.6
5,215,607 + AO353_23775 0.11 +1.0
5,215,607 + AO353_23775 0.11 +0.1
5,215,608 - AO353_23775 0.11 -0.5
5,215,608 - AO353_23775 0.11 +0.9
5,215,608 - AO353_23775 0.11 +0.0
5,215,608 - AO353_23775 0.11 +2.0
5,215,608 - AO353_23775 0.11 -0.2
5,215,608 - AO353_23775 0.11 -1.0
5,215,608 - AO353_23775 0.11 +0.7
5,215,718 + AO353_23775 0.18 +1.0
5,215,718 + AO353_23775 0.18 +0.4
5,215,718 + AO353_23775 0.18 +0.8
5,215,718 + AO353_23775 0.18 +0.9
5,215,718 + AO353_23775 0.18 -0.3
5,215,718 + AO353_23775 0.18 +1.4
5,215,718 + AO353_23775 0.18 +1.4
5,215,719 - AO353_23775 0.18 +1.1
5,215,719 - AO353_23775 0.18 -1.0
5,215,719 - AO353_23775 0.18 -1.1
5,215,719 - AO353_23775 0.18 +1.7
5,215,719 - AO353_23775 0.18 +0.1
5,215,719 - AO353_23775 0.18 -1.2
5,215,719 - AO353_23775 0.18 +1.1
5,215,719 - AO353_23775 0.18 -1.1
5,215,819 + AO353_23775 0.24 -0.0
5,215,820 - AO353_23775 0.25 -0.4
5,215,820 - AO353_23775 0.25 +1.2
5,215,820 - AO353_23775 0.25 +0.3
5,215,820 - AO353_23775 0.25 +0.9
5,215,965 - AO353_23775 0.34 +0.4
5,216,205 + AO353_23775 0.49 -0.3
5,216,205 + AO353_23775 0.49 -0.0
5,216,206 - AO353_23775 0.49 +0.7
5,216,222 + AO353_23775 0.50 -1.4
5,216,222 + AO353_23775 0.50 -0.7
5,216,222 + AO353_23775 0.50 -0.3
5,216,222 + AO353_23775 0.50 +1.5
5,216,223 - AO353_23775 0.50 -0.0
5,216,244 + AO353_23775 0.52 -0.3
5,216,244 + AO353_23775 0.52 -1.8
5,216,245 - AO353_23775 0.52 +2.7
5,216,245 - AO353_23775 0.52 +3.6
5,216,245 - AO353_23775 0.52 +1.3
5,216,245 - AO353_23775 0.52 -0.4
5,216,255 + AO353_23775 0.52 +0.1
5,216,256 - AO353_23775 0.52 +0.3
5,216,292 - AO353_23775 0.55 +1.7
5,216,332 - AO353_23775 0.57 -0.8
5,216,372 + AO353_23775 0.60 +0.9
5,216,373 - AO353_23775 0.60 +0.1
5,216,373 - -0.5
5,216,382 + AO353_23775 0.60 +0.4
5,216,382 + AO353_23775 0.60 +1.1
5,216,383 - AO353_23775 0.60 -0.6
5,216,429 + AO353_23775 0.63 +0.5
5,216,429 + AO353_23775 0.63 -0.3
5,216,429 + AO353_23775 0.63 +2.8
5,216,430 - AO353_23775 0.63 -0.7
5,216,430 - AO353_23775 0.63 +0.3
5,216,430 - AO353_23775 0.63 +1.1
5,216,430 - AO353_23775 0.63 +0.5
5,216,606 + AO353_23775 0.75 -0.3
5,216,606 + AO353_23775 0.75 +1.1
5,216,607 - -0.7
5,216,630 + AO353_23775 0.76 +0.8
5,216,630 + AO353_23775 0.76 +0.8
5,216,630 + AO353_23775 0.76 +0.7
5,216,630 + AO353_23775 0.76 +2.1
5,216,630 + AO353_23775 0.76 +0.6
5,216,630 + AO353_23775 0.76 -0.2
5,216,630 + AO353_23775 0.76 +0.2
5,216,630 + AO353_23775 0.76 +0.6
5,216,630 + AO353_23775 0.76 +1.2
5,216,631 - AO353_23775 0.76 -0.0
5,216,631 - AO353_23775 0.76 -0.8
5,216,631 - +0.7
5,216,986 + +0.1
5,216,986 + -1.0
5,217,019 + -0.2
5,217,019 + +0.3
5,217,090 + +1.5
5,217,139 + +2.3
5,217,139 + +0.5
5,217,139 + -0.9
5,217,140 - -1.1
5,217,140 - -2.7
5,217,140 - -0.1
5,217,140 - -0.0
5,217,140 - -1.6
5,217,142 + +0.3
5,217,143 - +0.8
5,217,267 + -0.9
5,217,267 + -0.9
5,217,268 - +0.6
5,217,268 - -2.9
5,217,279 + -0.5
5,217,279 + -0.2
5,217,280 - -1.1
5,217,454 - +0.1
5,217,454 - -0.5
5,217,496 + +0.5
5,217,497 - -0.4
5,217,517 + +0.1
5,217,529 + +0.8
5,217,558 + -0.3
5,217,558 + +1.7
5,217,601 + -0.7
5,217,602 - -0.4
5,217,651 + +1.9
5,217,652 - -0.0
5,217,652 - -0.0
5,217,674 + AO353_23780 0.12 -0.5
5,217,674 + AO353_23780 0.12 +0.3
5,217,675 - AO353_23780 0.12 +1.3
5,217,675 - AO353_23780 0.12 -0.9
5,217,675 - AO353_23780 0.12 -1.5
5,217,675 - AO353_23780 0.12 -0.4
5,217,675 - AO353_23780 0.12 +0.5
5,217,946 + AO353_23780 0.41 -0.1
5,217,947 - AO353_23780 0.41 -1.7

Or see this region's nucleotide sequence