Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23750

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23745 and AO353_23750 are separated by 177 nucleotidesAO353_23750 and AO353_23755 are separated by 116 nucleotidesAO353_23755 and AO353_23760 are separated by 21 nucleotides AO353_23745: AO353_23745 - acetylglucosaminylphosphatidylinositol deacetylase, at 5,205,219 to 5,205,977 _23745 AO353_23750: AO353_23750 - glycogen debranching protein, at 5,206,155 to 5,208,314 _23750 AO353_23755: AO353_23755 - hypothetical protein, at 5,208,431 to 5,208,733 _23755 AO353_23760: AO353_23760 - maltooligosyl trehalose synthase, at 5,208,755 to 5,211,541 _23760 Position (kb) 5206 5207 5208 5209Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5205.231 kb on + strandat 5205.232 kb on - strandat 5205.238 kb on + strandat 5205.322 kb on + strand, within AO353_23745at 5205.496 kb on - strand, within AO353_23745at 5205.496 kb on - strandat 5205.644 kb on + strand, within AO353_23745at 5205.645 kb on - strand, within AO353_23745at 5205.879 kb on - strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.905 kb on + strandat 5205.905 kb on + strandat 5205.905 kb on + strandat 5205.906 kb on - strandat 5205.984 kb on - strandat 5205.984 kb on - strandat 5205.999 kb on + strandat 5206.000 kb on - strandat 5206.053 kb on + strandat 5206.054 kb on - strandat 5206.062 kb on + strandat 5206.062 kb on + strandat 5206.062 kb on + strandat 5206.062 kb on + strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.123 kb on - strandat 5206.214 kb on - strandat 5206.214 kb on - strandat 5206.214 kb on - strandat 5206.359 kb on - strandat 5206.411 kb on - strand, within AO353_23750at 5206.516 kb on + strand, within AO353_23750at 5206.516 kb on + strand, within AO353_23750at 5206.516 kb on + strand, within AO353_23750at 5206.516 kb on + strand, within AO353_23750at 5206.517 kb on - strand, within AO353_23750at 5206.658 kb on - strand, within AO353_23750at 5206.752 kb on - strand, within AO353_23750at 5206.752 kb on - strand, within AO353_23750at 5206.835 kb on + strand, within AO353_23750at 5206.835 kb on + strand, within AO353_23750at 5206.836 kb on - strand, within AO353_23750at 5206.836 kb on - strand, within AO353_23750at 5206.838 kb on + strand, within AO353_23750at 5206.838 kb on + strand, within AO353_23750at 5206.838 kb on + strand, within AO353_23750at 5206.839 kb on - strand, within AO353_23750at 5206.885 kb on + strand, within AO353_23750at 5206.886 kb on - strand, within AO353_23750at 5207.044 kb on - strand, within AO353_23750at 5207.145 kb on + strand, within AO353_23750at 5207.145 kb on + strand, within AO353_23750at 5207.146 kb on - strandat 5207.146 kb on - strand, within AO353_23750at 5207.357 kb on + strand, within AO353_23750at 5207.358 kb on - strand, within AO353_23750at 5207.358 kb on - strand, within AO353_23750at 5207.359 kb on + strandat 5207.359 kb on + strand, within AO353_23750at 5207.359 kb on + strand, within AO353_23750at 5207.359 kb on + strand, within AO353_23750at 5207.359 kb on + strand, within AO353_23750at 5207.359 kb on + strand, within AO353_23750at 5207.359 kb on + strand, within AO353_23750at 5207.360 kb on - strand, within AO353_23750at 5207.360 kb on - strand, within AO353_23750at 5207.360 kb on - strand, within AO353_23750at 5207.360 kb on - strand, within AO353_23750at 5207.389 kb on + strand, within AO353_23750at 5207.392 kb on + strand, within AO353_23750at 5207.392 kb on + strand, within AO353_23750at 5207.392 kb on + strand, within AO353_23750at 5207.392 kb on + strand, within AO353_23750at 5207.393 kb on - strand, within AO353_23750at 5207.393 kb on - strand, within AO353_23750at 5207.461 kb on + strandat 5207.461 kb on + strand, within AO353_23750at 5207.461 kb on + strand, within AO353_23750at 5207.462 kb on - strand, within AO353_23750at 5207.584 kb on + strand, within AO353_23750at 5207.585 kb on - strand, within AO353_23750at 5207.585 kb on - strand, within AO353_23750at 5207.585 kb on - strand, within AO353_23750at 5207.593 kb on + strand, within AO353_23750at 5207.610 kb on - strand, within AO353_23750at 5207.684 kb on + strandat 5207.685 kb on - strand, within AO353_23750at 5207.772 kb on + strand, within AO353_23750at 5207.772 kb on + strand, within AO353_23750at 5207.773 kb on - strand, within AO353_23750at 5207.785 kb on + strand, within AO353_23750at 5207.786 kb on - strandat 5207.786 kb on - strand, within AO353_23750at 5207.786 kb on - strand, within AO353_23750at 5207.786 kb on - strand, within AO353_23750at 5208.043 kb on + strand, within AO353_23750at 5208.043 kb on + strand, within AO353_23750at 5208.043 kb on + strand, within AO353_23750at 5208.044 kb on - strand, within AO353_23750at 5208.044 kb on - strand, within AO353_23750at 5208.044 kb on - strand, within AO353_23750at 5208.044 kb on - strand, within AO353_23750at 5208.058 kb on + strand, within AO353_23750at 5208.058 kb on + strand, within AO353_23750at 5208.058 kb on + strand, within AO353_23750at 5208.058 kb on + strand, within AO353_23750at 5208.058 kb on + strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.088 kb on + strand, within AO353_23750at 5208.089 kb on - strand, within AO353_23750at 5208.089 kb on - strand, within AO353_23750at 5208.089 kb on - strand, within AO353_23750at 5208.112 kb on + strandat 5208.112 kb on + strandat 5208.113 kb on - strandat 5208.426 kb on + strandat 5208.427 kb on - strandat 5208.427 kb on - strandat 5208.446 kb on - strandat 5208.511 kb on + strand, within AO353_23755at 5208.697 kb on - strand, within AO353_23755at 5208.767 kb on - strandat 5208.842 kb on - strandat 5208.842 kb on - strandat 5208.842 kb on - strandat 5209.263 kb on + strand, within AO353_23760

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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5,205,231 + -1.5
5,205,232 - +0.4
5,205,238 + +0.3
5,205,322 + AO353_23745 0.14 -0.9
5,205,496 - AO353_23745 0.36 +1.0
5,205,496 - +2.9
5,205,644 + AO353_23745 0.56 +1.0
5,205,645 - AO353_23745 0.56 -0.6
5,205,879 - AO353_23745 0.87 -0.7
5,205,884 + AO353_23745 0.88 -1.2
5,205,884 + AO353_23745 0.88 +0.5
5,205,884 + AO353_23745 0.88 -1.0
5,205,884 + AO353_23745 0.88 -1.2
5,205,884 + AO353_23745 0.88 +0.3
5,205,884 + AO353_23745 0.88 -0.9
5,205,884 + AO353_23745 0.88 +0.1
5,205,884 + AO353_23745 0.88 -1.7
5,205,884 + AO353_23745 0.88 -0.7
5,205,885 - AO353_23745 0.88 +0.4
5,205,885 - AO353_23745 0.88 -0.7
5,205,885 - AO353_23745 0.88 +0.1
5,205,885 - AO353_23745 0.88 -0.4
5,205,885 - AO353_23745 0.88 +0.4
5,205,885 - AO353_23745 0.88 +1.3
5,205,885 - AO353_23745 0.88 +0.5
5,205,885 - AO353_23745 0.88 -0.4
5,205,885 - AO353_23745 0.88 +1.3
5,205,885 - AO353_23745 0.88 +0.4
5,205,905 + -0.5
5,205,905 + -0.9
5,205,905 + +1.1
5,205,906 - +0.8
5,205,984 - -1.0
5,205,984 - +0.3
5,205,999 + -0.8
5,206,000 - -0.5
5,206,053 + -0.4
5,206,054 - -1.5
5,206,062 + -1.7
5,206,062 + -0.5
5,206,062 + +0.4
5,206,062 + -2.0
5,206,063 - -0.7
5,206,063 - -1.7
5,206,063 - +1.5
5,206,063 - +0.7
5,206,063 - -1.3
5,206,063 - +0.5
5,206,063 - +0.1
5,206,063 - -0.1
5,206,063 - -0.6
5,206,123 - -0.9
5,206,214 - -2.9
5,206,214 - +0.7
5,206,214 - +1.7
5,206,359 - +0.9
5,206,411 - AO353_23750 0.12 -2.1
5,206,516 + AO353_23750 0.17 -0.7
5,206,516 + AO353_23750 0.17 +0.1
5,206,516 + AO353_23750 0.17 +0.5
5,206,516 + AO353_23750 0.17 -0.4
5,206,517 - AO353_23750 0.17 -0.3
5,206,658 - AO353_23750 0.23 -1.0
5,206,752 - AO353_23750 0.28 -2.0
5,206,752 - AO353_23750 0.28 -0.5
5,206,835 + AO353_23750 0.31 -1.5
5,206,835 + AO353_23750 0.31 -0.5
5,206,836 - AO353_23750 0.32 -0.2
5,206,836 - AO353_23750 0.32 +0.0
5,206,838 + AO353_23750 0.32 -1.4
5,206,838 + AO353_23750 0.32 +0.6
5,206,838 + AO353_23750 0.32 -0.8
5,206,839 - AO353_23750 0.32 +0.3
5,206,885 + AO353_23750 0.34 -0.5
5,206,886 - AO353_23750 0.34 +0.8
5,207,044 - AO353_23750 0.41 -1.1
5,207,145 + AO353_23750 0.46 -1.0
5,207,145 + AO353_23750 0.46 -0.9
5,207,146 - +0.3
5,207,146 - AO353_23750 0.46 -0.3
5,207,357 + AO353_23750 0.56 +0.1
5,207,358 - AO353_23750 0.56 +0.7
5,207,358 - AO353_23750 0.56 +0.5
5,207,359 + -0.5
5,207,359 + AO353_23750 0.56 -0.0
5,207,359 + AO353_23750 0.56 -0.6
5,207,359 + AO353_23750 0.56 -0.4
5,207,359 + AO353_23750 0.56 -1.5
5,207,359 + AO353_23750 0.56 -0.4
5,207,359 + AO353_23750 0.56 -1.0
5,207,360 - AO353_23750 0.56 -0.7
5,207,360 - AO353_23750 0.56 -1.3
5,207,360 - AO353_23750 0.56 -1.3
5,207,360 - AO353_23750 0.56 -0.5
5,207,389 + AO353_23750 0.57 +0.1
5,207,392 + AO353_23750 0.57 -0.2
5,207,392 + AO353_23750 0.57 +0.8
5,207,392 + AO353_23750 0.57 -2.2
5,207,392 + AO353_23750 0.57 -2.0
5,207,393 - AO353_23750 0.57 -1.7
5,207,393 - AO353_23750 0.57 +0.7
5,207,461 + -0.3
5,207,461 + AO353_23750 0.60 +0.7
5,207,461 + AO353_23750 0.60 +0.7
5,207,462 - AO353_23750 0.61 +0.3
5,207,584 + AO353_23750 0.66 +0.8
5,207,585 - AO353_23750 0.66 -0.5
5,207,585 - AO353_23750 0.66 +0.8
5,207,585 - AO353_23750 0.66 -1.1
5,207,593 + AO353_23750 0.67 -1.0
5,207,610 - AO353_23750 0.67 +1.3
5,207,684 + +1.4
5,207,685 - AO353_23750 0.71 +0.8
5,207,772 + AO353_23750 0.75 -0.2
5,207,772 + AO353_23750 0.75 -0.0
5,207,773 - AO353_23750 0.75 -0.3
5,207,785 + AO353_23750 0.75 -0.9
5,207,786 - +1.0
5,207,786 - AO353_23750 0.76 +1.5
5,207,786 - AO353_23750 0.76 +0.0
5,207,786 - AO353_23750 0.76 +0.7
5,208,043 + AO353_23750 0.87 +0.5
5,208,043 + AO353_23750 0.87 +1.5
5,208,043 + AO353_23750 0.87 -0.4
5,208,044 - AO353_23750 0.87 -1.9
5,208,044 - AO353_23750 0.87 -1.2
5,208,044 - AO353_23750 0.87 -1.6
5,208,044 - AO353_23750 0.87 -0.3
5,208,058 + AO353_23750 0.88 -0.5
5,208,058 + AO353_23750 0.88 -1.2
5,208,058 + AO353_23750 0.88 -0.7
5,208,058 + AO353_23750 0.88 -0.3
5,208,058 + AO353_23750 0.88 +1.0
5,208,059 - AO353_23750 0.88 -0.4
5,208,059 - AO353_23750 0.88 -1.3
5,208,059 - AO353_23750 0.88 +0.7
5,208,059 - AO353_23750 0.88 -0.2
5,208,059 - AO353_23750 0.88 -0.3
5,208,059 - AO353_23750 0.88 -0.3
5,208,059 - AO353_23750 0.88 +0.3
5,208,059 - AO353_23750 0.88 +2.0
5,208,059 - AO353_23750 0.88 -0.5
5,208,088 + AO353_23750 0.89 -2.1
5,208,089 - AO353_23750 0.90 -0.0
5,208,089 - AO353_23750 0.90 +0.2
5,208,089 - AO353_23750 0.90 +0.3
5,208,112 + +1.3
5,208,112 + +0.3
5,208,113 - -0.5
5,208,426 + -0.0
5,208,427 - +2.0
5,208,427 - +0.9
5,208,446 - -1.0
5,208,511 + AO353_23755 0.26 +1.0
5,208,697 - AO353_23755 0.88 +0.3
5,208,767 - -0.8
5,208,842 - -1.3
5,208,842 - -1.0
5,208,842 - +0.5
5,209,263 + AO353_23760 0.18 -1.6

Or see this region's nucleotide sequence