Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10450

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_10445 and AO353_10450 are separated by 321 nucleotidesAO353_10450 and AO353_10455 are separated by 2 nucleotides AO353_10445: AO353_10445 - tRNA uridine 5-carboxymethylaminomethyl modification protein, at 2,287,034 to 2,288,932 _10445 AO353_10450: AO353_10450 - hypothetical protein, at 2,289,254 to 2,289,535 _10450 AO353_10455: AO353_10455 - tRNA modification GTPase MnmE, at 2,289,538 to 2,290,908 _10455 Position (kb) 2289 2290Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2288.447 kb on - strand, within AO353_10445at 2288.852 kb on - strandat 2288.972 kb on - strandat 2288.972 kb on - strandat 2288.972 kb on - strandat 2288.972 kb on - strandat 2289.008 kb on - strandat 2289.008 kb on - strandat 2289.008 kb on - strandat 2289.008 kb on - strandat 2289.008 kb on - strandat 2289.008 kb on - strandat 2289.008 kb on - strandat 2289.008 kb on - strandat 2289.008 kb on - strandat 2289.008 kb on - strandat 2289.008 kb on - strandat 2289.008 kb on - strandat 2289.008 kb on - strandat 2289.009 kb on + strandat 2289.009 kb on + strandat 2289.010 kb on - strandat 2289.028 kb on - strandat 2289.028 kb on - strandat 2289.028 kb on - strandat 2289.078 kb on + strandat 2289.086 kb on - strandat 2289.086 kb on - strandat 2289.101 kb on + strandat 2289.118 kb on + strandat 2289.118 kb on + strandat 2289.118 kb on + strandat 2289.118 kb on + strandat 2289.125 kb on - strandat 2289.130 kb on + strandat 2289.133 kb on - strandat 2289.152 kb on + strandat 2289.153 kb on - strandat 2289.153 kb on - strandat 2289.158 kb on + strandat 2289.159 kb on - strandat 2289.159 kb on - strandat 2289.159 kb on - strandat 2289.159 kb on - strandat 2289.159 kb on - strandat 2289.159 kb on - strandat 2289.162 kb on + strandat 2289.162 kb on + strandat 2289.162 kb on + strandat 2289.163 kb on - strandat 2289.163 kb on - strandat 2289.170 kb on + strandat 2289.171 kb on - strandat 2289.171 kb on - strandat 2289.183 kb on + strandat 2289.239 kb on + strandat 2289.239 kb on + strandat 2289.239 kb on + strandat 2289.239 kb on + strandat 2289.239 kb on + strandat 2289.239 kb on + strandat 2289.239 kb on + strandat 2289.239 kb on + strandat 2289.239 kb on + strandat 2289.240 kb on - strandat 2289.304 kb on - strand, within AO353_10450at 2289.326 kb on + strand, within AO353_10450at 2289.327 kb on - strand, within AO353_10450at 2289.339 kb on + strand, within AO353_10450at 2289.434 kb on + strand, within AO353_10450at 2289.469 kb on + strand, within AO353_10450at 2289.469 kb on + strand, within AO353_10450at 2289.469 kb on + strand, within AO353_10450at 2289.469 kb on + strand, within AO353_10450at 2289.469 kb on + strand, within AO353_10450at 2289.469 kb on + strand, within AO353_10450at 2289.470 kb on - strand, within AO353_10450at 2289.470 kb on - strand, within AO353_10450at 2289.470 kb on - strand, within AO353_10450at 2289.470 kb on - strand, within AO353_10450at 2289.470 kb on - strand, within AO353_10450at 2289.470 kb on - strand, within AO353_10450at 2289.470 kb on - strand, within AO353_10450at 2289.539 kb on + strandat 2289.539 kb on + strandat 2289.539 kb on + strandat 2289.540 kb on - strandat 2289.540 kb on - strandat 2289.540 kb on - strandat 2289.540 kb on - strandat 2289.540 kb on - strandat 2289.540 kb on - strandat 2289.540 kb on - strandat 2289.540 kb on - strandat 2289.770 kb on + strand, within AO353_10455at 2290.119 kb on + strand, within AO353_10455at 2290.404 kb on - strand, within AO353_10455at 2290.437 kb on + strand, within AO353_10455

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,288,447 - AO353_10445 0.74 +0.3
2,288,852 - -1.3
2,288,972 - -1.0
2,288,972 - -1.4
2,288,972 - -1.2
2,288,972 - -3.1
2,289,008 - -0.0
2,289,008 - -0.2
2,289,008 - -0.3
2,289,008 - +0.1
2,289,008 - +1.1
2,289,008 - -1.2
2,289,008 - -1.0
2,289,008 - -1.3
2,289,008 - -0.6
2,289,008 - +0.4
2,289,008 - -1.2
2,289,008 - -0.7
2,289,008 - -0.7
2,289,009 + +1.6
2,289,009 + +0.2
2,289,010 - -2.0
2,289,028 - -0.6
2,289,028 - -2.4
2,289,028 - -1.1
2,289,078 + +0.9
2,289,086 - -0.1
2,289,086 - -1.5
2,289,101 + +0.6
2,289,118 + +0.9
2,289,118 + +1.0
2,289,118 + +1.4
2,289,118 + +1.8
2,289,125 - -1.9
2,289,130 + +1.1
2,289,133 - -1.5
2,289,152 + +2.1
2,289,153 - -1.9
2,289,153 - -1.6
2,289,158 + +2.4
2,289,159 - -0.6
2,289,159 - -0.3
2,289,159 - -1.8
2,289,159 - -3.0
2,289,159 - +0.5
2,289,159 - -0.7
2,289,162 + +1.6
2,289,162 + +0.7
2,289,162 + +2.0
2,289,163 - -0.9
2,289,163 - +0.3
2,289,170 + +2.3
2,289,171 - +0.3
2,289,171 - -1.1
2,289,183 + +2.8
2,289,239 + +1.4
2,289,239 + +1.5
2,289,239 + +2.4
2,289,239 + +1.5
2,289,239 + +0.8
2,289,239 + +3.0
2,289,239 + +0.1
2,289,239 + +1.3
2,289,239 + +1.5
2,289,240 - +1.6
2,289,304 - AO353_10450 0.18 -0.9
2,289,326 + AO353_10450 0.26 +1.7
2,289,327 - AO353_10450 0.26 -2.2
2,289,339 + AO353_10450 0.30 +2.4
2,289,434 + AO353_10450 0.64 +1.2
2,289,469 + AO353_10450 0.76 +2.5
2,289,469 + AO353_10450 0.76 +2.1
2,289,469 + AO353_10450 0.76 +1.3
2,289,469 + AO353_10450 0.76 +2.4
2,289,469 + AO353_10450 0.76 +1.3
2,289,469 + AO353_10450 0.76 +1.0
2,289,470 - AO353_10450 0.77 +0.0
2,289,470 - AO353_10450 0.77 +0.2
2,289,470 - AO353_10450 0.77 -0.1
2,289,470 - AO353_10450 0.77 +1.5
2,289,470 - AO353_10450 0.77 -0.8
2,289,470 - AO353_10450 0.77 +1.0
2,289,470 - AO353_10450 0.77 +0.9
2,289,539 + +1.3
2,289,539 + +0.1
2,289,539 + +1.4
2,289,540 - -1.0
2,289,540 - -0.7
2,289,540 - +1.3
2,289,540 - -0.8
2,289,540 - -0.6
2,289,540 - -0.5
2,289,540 - +0.0
2,289,540 - +0.2
2,289,770 + AO353_10455 0.17 +0.6
2,290,119 + AO353_10455 0.42 -0.4
2,290,404 - AO353_10455 0.63 +1.6
2,290,437 + AO353_10455 0.66 +1.1

Or see this region's nucleotide sequence