Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_10445 and AO353_10450 are separated by 321 nucleotides AO353_10450 and AO353_10455 are separated by 2 nucleotides
AO353_10445: AO353_10445 - tRNA uridine 5-carboxymethylaminomethyl modification protein, at 2,287,034 to 2,288,932
_10445
AO353_10450: AO353_10450 - hypothetical protein, at 2,289,254 to 2,289,535
_10450
AO353_10455: AO353_10455 - tRNA modification GTPase MnmE, at 2,289,538 to 2,290,908
_10455
Position (kb)
2289
2290 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2288.447 kb on - strand, within AO353_10445 at 2288.852 kb on - strand at 2288.972 kb on - strand at 2288.972 kb on - strand at 2288.972 kb on - strand at 2288.972 kb on - strand at 2289.008 kb on - strand at 2289.008 kb on - strand at 2289.008 kb on - strand at 2289.008 kb on - strand at 2289.008 kb on - strand at 2289.008 kb on - strand at 2289.008 kb on - strand at 2289.008 kb on - strand at 2289.008 kb on - strand at 2289.008 kb on - strand at 2289.008 kb on - strand at 2289.008 kb on - strand at 2289.008 kb on - strand at 2289.009 kb on + strand at 2289.009 kb on + strand at 2289.010 kb on - strand at 2289.028 kb on - strand at 2289.028 kb on - strand at 2289.028 kb on - strand at 2289.078 kb on + strand at 2289.086 kb on - strand at 2289.086 kb on - strand at 2289.101 kb on + strand at 2289.118 kb on + strand at 2289.118 kb on + strand at 2289.118 kb on + strand at 2289.118 kb on + strand at 2289.125 kb on - strand at 2289.130 kb on + strand at 2289.133 kb on - strand at 2289.152 kb on + strand at 2289.153 kb on - strand at 2289.153 kb on - strand at 2289.158 kb on + strand at 2289.159 kb on - strand at 2289.159 kb on - strand at 2289.159 kb on - strand at 2289.159 kb on - strand at 2289.159 kb on - strand at 2289.159 kb on - strand at 2289.162 kb on + strand at 2289.162 kb on + strand at 2289.162 kb on + strand at 2289.163 kb on - strand at 2289.163 kb on - strand at 2289.170 kb on + strand at 2289.171 kb on - strand at 2289.171 kb on - strand at 2289.183 kb on + strand at 2289.239 kb on + strand at 2289.239 kb on + strand at 2289.239 kb on + strand at 2289.239 kb on + strand at 2289.239 kb on + strand at 2289.239 kb on + strand at 2289.239 kb on + strand at 2289.239 kb on + strand at 2289.239 kb on + strand at 2289.240 kb on - strand at 2289.304 kb on - strand, within AO353_10450 at 2289.326 kb on + strand, within AO353_10450 at 2289.327 kb on - strand, within AO353_10450 at 2289.339 kb on + strand, within AO353_10450 at 2289.434 kb on + strand, within AO353_10450 at 2289.469 kb on + strand, within AO353_10450 at 2289.469 kb on + strand, within AO353_10450 at 2289.469 kb on + strand, within AO353_10450 at 2289.469 kb on + strand, within AO353_10450 at 2289.469 kb on + strand, within AO353_10450 at 2289.469 kb on + strand, within AO353_10450 at 2289.470 kb on - strand, within AO353_10450 at 2289.470 kb on - strand, within AO353_10450 at 2289.470 kb on - strand, within AO353_10450 at 2289.470 kb on - strand, within AO353_10450 at 2289.470 kb on - strand, within AO353_10450 at 2289.470 kb on - strand, within AO353_10450 at 2289.470 kb on - strand, within AO353_10450 at 2289.539 kb on + strand at 2289.539 kb on + strand at 2289.539 kb on + strand at 2289.540 kb on - strand at 2289.540 kb on - strand at 2289.540 kb on - strand at 2289.540 kb on - strand at 2289.540 kb on - strand at 2289.540 kb on - strand at 2289.540 kb on - strand at 2289.540 kb on - strand at 2289.770 kb on + strand, within AO353_10455 at 2290.119 kb on + strand, within AO353_10455 at 2290.404 kb on - strand, within AO353_10455 at 2290.437 kb on + strand, within AO353_10455
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,288,447 - AO353_10445 0.74 +0.3 2,288,852 - -1.3 2,288,972 - -1.0 2,288,972 - -1.4 2,288,972 - -1.2 2,288,972 - -3.1 2,289,008 - -0.0 2,289,008 - -0.2 2,289,008 - -0.3 2,289,008 - +0.1 2,289,008 - +1.1 2,289,008 - -1.2 2,289,008 - -1.0 2,289,008 - -1.3 2,289,008 - -0.6 2,289,008 - +0.4 2,289,008 - -1.2 2,289,008 - -0.7 2,289,008 - -0.7 2,289,009 + +1.6 2,289,009 + +0.2 2,289,010 - -2.0 2,289,028 - -0.6 2,289,028 - -2.4 2,289,028 - -1.1 2,289,078 + +0.9 2,289,086 - -0.1 2,289,086 - -1.5 2,289,101 + +0.6 2,289,118 + +0.9 2,289,118 + +1.0 2,289,118 + +1.4 2,289,118 + +1.8 2,289,125 - -1.9 2,289,130 + +1.1 2,289,133 - -1.5 2,289,152 + +2.1 2,289,153 - -1.9 2,289,153 - -1.6 2,289,158 + +2.4 2,289,159 - -0.6 2,289,159 - -0.3 2,289,159 - -1.8 2,289,159 - -3.0 2,289,159 - +0.5 2,289,159 - -0.7 2,289,162 + +1.6 2,289,162 + +0.7 2,289,162 + +2.0 2,289,163 - -0.9 2,289,163 - +0.3 2,289,170 + +2.3 2,289,171 - +0.3 2,289,171 - -1.1 2,289,183 + +2.8 2,289,239 + +1.4 2,289,239 + +1.5 2,289,239 + +2.4 2,289,239 + +1.5 2,289,239 + +0.8 2,289,239 + +3.0 2,289,239 + +0.1 2,289,239 + +1.3 2,289,239 + +1.5 2,289,240 - +1.6 2,289,304 - AO353_10450 0.18 -0.9 2,289,326 + AO353_10450 0.26 +1.7 2,289,327 - AO353_10450 0.26 -2.2 2,289,339 + AO353_10450 0.30 +2.4 2,289,434 + AO353_10450 0.64 +1.2 2,289,469 + AO353_10450 0.76 +2.5 2,289,469 + AO353_10450 0.76 +2.1 2,289,469 + AO353_10450 0.76 +1.3 2,289,469 + AO353_10450 0.76 +2.4 2,289,469 + AO353_10450 0.76 +1.3 2,289,469 + AO353_10450 0.76 +1.0 2,289,470 - AO353_10450 0.77 +0.0 2,289,470 - AO353_10450 0.77 +0.2 2,289,470 - AO353_10450 0.77 -0.1 2,289,470 - AO353_10450 0.77 +1.5 2,289,470 - AO353_10450 0.77 -0.8 2,289,470 - AO353_10450 0.77 +1.0 2,289,470 - AO353_10450 0.77 +0.9 2,289,539 + +1.3 2,289,539 + +0.1 2,289,539 + +1.4 2,289,540 - -1.0 2,289,540 - -0.7 2,289,540 - +1.3 2,289,540 - -0.8 2,289,540 - -0.6 2,289,540 - -0.5 2,289,540 - +0.0 2,289,540 - +0.2 2,289,770 + AO353_10455 0.17 +0.6 2,290,119 + AO353_10455 0.42 -0.4 2,290,404 - AO353_10455 0.63 +1.6 2,290,437 + AO353_10455 0.66 +1.1
Or see this region's nucleotide sequence