Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07240

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07230 and AO353_07235 are separated by 70 nucleotidesAO353_07235 and AO353_07240 overlap by 4 nucleotidesAO353_07240 and AO353_07245 are separated by 92 nucleotides AO353_07230: AO353_07230 - anthranilate synthase, at 1,586,301 to 1,587,776 _07230 AO353_07235: AO353_07235 - phosphoglycolate phosphatase, at 1,587,847 to 1,588,665 _07235 AO353_07240: AO353_07240 - ribulose phosphate epimerase, at 1,588,662 to 1,589,336 _07240 AO353_07245: AO353_07245 - alcohol dehydrogenase, at 1,589,429 to 1,590,577 _07245 Position (kb) 1588 1589 1590Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1587.677 kb on - strandat 1587.677 kb on - strandat 1587.736 kb on + strandat 1587.736 kb on + strandat 1587.802 kb on - strandat 1587.958 kb on + strand, within AO353_07235at 1587.958 kb on + strand, within AO353_07235at 1587.958 kb on + strand, within AO353_07235at 1587.958 kb on + strand, within AO353_07235at 1587.958 kb on + strand, within AO353_07235at 1587.958 kb on + strand, within AO353_07235at 1587.959 kb on - strand, within AO353_07235at 1587.991 kb on + strand, within AO353_07235at 1587.991 kb on + strand, within AO353_07235at 1587.991 kb on + strand, within AO353_07235at 1587.992 kb on - strand, within AO353_07235at 1587.992 kb on - strand, within AO353_07235at 1587.992 kb on - strand, within AO353_07235at 1587.992 kb on - strand, within AO353_07235at 1588.053 kb on + strand, within AO353_07235at 1588.055 kb on + strand, within AO353_07235at 1588.055 kb on + strand, within AO353_07235at 1588.056 kb on - strand, within AO353_07235at 1588.056 kb on - strand, within AO353_07235at 1588.056 kb on - strand, within AO353_07235at 1588.056 kb on - strand, within AO353_07235at 1588.056 kb on - strand, within AO353_07235at 1588.056 kb on - strand, within AO353_07235at 1588.056 kb on - strand, within AO353_07235at 1588.056 kb on - strand, within AO353_07235at 1588.056 kb on - strand, within AO353_07235at 1588.061 kb on + strand, within AO353_07235at 1588.061 kb on + strand, within AO353_07235at 1588.061 kb on + strand, within AO353_07235at 1588.061 kb on + strand, within AO353_07235at 1588.061 kb on + strand, within AO353_07235at 1588.061 kb on + strand, within AO353_07235at 1588.061 kb on + strand, within AO353_07235at 1588.062 kb on - strand, within AO353_07235at 1588.062 kb on - strand, within AO353_07235at 1588.062 kb on - strand, within AO353_07235at 1588.062 kb on - strand, within AO353_07235at 1588.062 kb on - strand, within AO353_07235at 1588.073 kb on - strand, within AO353_07235at 1588.152 kb on + strand, within AO353_07235at 1588.152 kb on + strand, within AO353_07235at 1588.153 kb on - strand, within AO353_07235at 1588.153 kb on - strand, within AO353_07235at 1588.153 kb on - strand, within AO353_07235at 1588.238 kb on + strand, within AO353_07235at 1588.238 kb on + strand, within AO353_07235at 1588.348 kb on + strand, within AO353_07235at 1588.349 kb on - strand, within AO353_07235at 1588.349 kb on - strand, within AO353_07235at 1588.349 kb on - strand, within AO353_07235at 1588.349 kb on - strand, within AO353_07235at 1588.389 kb on - strand, within AO353_07235at 1588.389 kb on - strand, within AO353_07235at 1588.453 kb on - strand, within AO353_07235at 1588.453 kb on - strand, within AO353_07235at 1588.557 kb on + strand, within AO353_07235at 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.377 kb on + strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.378 kb on - strandat 1589.379 kb on + strandat 1589.379 kb on + strandat 1589.379 kb on + strandat 1589.379 kb on + strandat 1589.379 kb on + strandat 1589.379 kb on + strandat 1589.379 kb on + strandat 1589.380 kb on - strandat 1589.380 kb on - strandat 1589.380 kb on - strandat 1589.380 kb on - strandat 1589.380 kb on - strandat 1589.380 kb on - strandat 1589.430 kb on + strandat 1589.430 kb on + strandat 1589.430 kb on + strandat 1589.430 kb on + strandat 1589.430 kb on + strandat 1589.430 kb on + strandat 1589.430 kb on + strandat 1589.430 kb on + strandat 1589.431 kb on - strandat 1589.431 kb on - strandat 1589.433 kb on + strandat 1589.433 kb on + strandat 1589.433 kb on + strandat 1589.433 kb on + strandat 1589.433 kb on + strandat 1589.433 kb on + strandat 1589.434 kb on - strandat 1589.434 kb on - strandat 1589.445 kb on + strandat 1589.446 kb on - strandat 1589.446 kb on - strandat 1589.477 kb on - strandat 1589.477 kb on - strandat 1589.477 kb on - strandat 1589.504 kb on + strandat 1589.504 kb on + strandat 1589.504 kb on + strandat 1589.504 kb on + strandat 1589.504 kb on + strandat 1589.504 kb on + strandat 1589.504 kb on + strandat 1589.504 kb on + strandat 1589.505 kb on - strandat 1589.505 kb on - strandat 1589.505 kb on - strandat 1589.505 kb on - strandat 1589.550 kb on - strand, within AO353_07245at 1589.550 kb on - strand, within AO353_07245at 1589.561 kb on - strand, within AO353_07245at 1589.561 kb on - strand, within AO353_07245at 1589.620 kb on + strand, within AO353_07245at 1589.620 kb on + strand, within AO353_07245at 1589.620 kb on + strand, within AO353_07245at 1589.620 kb on + strand, within AO353_07245at 1589.621 kb on - strand, within AO353_07245at 1589.686 kb on + strand, within AO353_07245at 1589.686 kb on + strand, within AO353_07245at 1589.686 kb on + strand, within AO353_07245at 1589.686 kb on + strand, within AO353_07245at 1589.686 kb on + strand, within AO353_07245at 1589.687 kb on - strand, within AO353_07245at 1589.687 kb on - strand, within AO353_07245at 1589.724 kb on + strand, within AO353_07245at 1589.724 kb on + strand, within AO353_07245at 1589.724 kb on + strand, within AO353_07245at 1589.724 kb on + strand, within AO353_07245at 1589.724 kb on + strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.725 kb on - strand, within AO353_07245at 1589.892 kb on + strand, within AO353_07245at 1589.892 kb on + strand, within AO353_07245at 1589.892 kb on + strand, within AO353_07245at 1589.892 kb on + strand, within AO353_07245at 1589.892 kb on + strand, within AO353_07245at 1589.893 kb on - strand, within AO353_07245at 1589.893 kb on - strand, within AO353_07245at 1589.893 kb on - strand, within AO353_07245at 1589.893 kb on - strand, within AO353_07245at 1589.893 kb on - strand, within AO353_07245at 1589.893 kb on - strand, within AO353_07245at 1589.976 kb on + strand, within AO353_07245at 1589.976 kb on + strand, within AO353_07245at 1589.976 kb on + strand, within AO353_07245at 1589.976 kb on + strand, within AO353_07245at 1589.976 kb on + strand, within AO353_07245at 1589.976 kb on + strand, within AO353_07245at 1589.977 kb on - strand, within AO353_07245at 1589.977 kb on - strand, within AO353_07245at 1589.977 kb on - strand, within AO353_07245at 1590.084 kb on + strand, within AO353_07245at 1590.084 kb on + strand, within AO353_07245at 1590.084 kb on + strand, within AO353_07245at 1590.084 kb on + strand, within AO353_07245at 1590.085 kb on - strand, within AO353_07245at 1590.085 kb on - strand, within AO353_07245at 1590.085 kb on - strand, within AO353_07245at 1590.085 kb on - strand, within AO353_07245at 1590.085 kb on - strand, within AO353_07245at 1590.085 kb on - strand, within AO353_07245at 1590.085 kb on - strand, within AO353_07245at 1590.085 kb on - strand, within AO353_07245at 1590.085 kb on - strand, within AO353_07245at 1590.132 kb on - strand, within AO353_07245at 1590.255 kb on + strand, within AO353_07245at 1590.256 kb on - strand, within AO353_07245at 1590.256 kb on - strand, within AO353_07245at 1590.256 kb on - strand, within AO353_07245at 1590.333 kb on + strand, within AO353_07245

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,587,677 - -2.1
1,587,677 - -1.6
1,587,736 + -2.4
1,587,736 + -1.6
1,587,802 - -0.9
1,587,958 + AO353_07235 0.14 -1.0
1,587,958 + AO353_07235 0.14 +0.0
1,587,958 + AO353_07235 0.14 -2.0
1,587,958 + AO353_07235 0.14 -1.2
1,587,958 + AO353_07235 0.14 -0.3
1,587,958 + AO353_07235 0.14 +1.3
1,587,959 - AO353_07235 0.14 +1.2
1,587,991 + AO353_07235 0.18 -0.2
1,587,991 + AO353_07235 0.18 +2.0
1,587,991 + AO353_07235 0.18 +1.6
1,587,992 - AO353_07235 0.18 +1.6
1,587,992 - AO353_07235 0.18 -1.2
1,587,992 - AO353_07235 0.18 -0.5
1,587,992 - AO353_07235 0.18 +0.6
1,588,053 + AO353_07235 0.25 -0.3
1,588,055 + AO353_07235 0.25 -2.1
1,588,055 + AO353_07235 0.25 +0.1
1,588,056 - AO353_07235 0.26 -1.2
1,588,056 - AO353_07235 0.26 -0.9
1,588,056 - AO353_07235 0.26 +1.1
1,588,056 - AO353_07235 0.26 +0.7
1,588,056 - AO353_07235 0.26 +1.5
1,588,056 - AO353_07235 0.26 -0.4
1,588,056 - AO353_07235 0.26 +0.3
1,588,056 - AO353_07235 0.26 -0.0
1,588,056 - AO353_07235 0.26 -0.6
1,588,061 + AO353_07235 0.26 -1.3
1,588,061 + AO353_07235 0.26 +1.3
1,588,061 + AO353_07235 0.26 +1.6
1,588,061 + AO353_07235 0.26 -1.9
1,588,061 + AO353_07235 0.26 -1.2
1,588,061 + AO353_07235 0.26 -0.3
1,588,061 + AO353_07235 0.26 -0.3
1,588,062 - AO353_07235 0.26 +1.1
1,588,062 - AO353_07235 0.26 +0.6
1,588,062 - AO353_07235 0.26 -1.2
1,588,062 - AO353_07235 0.26 -0.9
1,588,062 - AO353_07235 0.26 +3.3
1,588,073 - AO353_07235 0.28 +0.1
1,588,152 + AO353_07235 0.37 +1.0
1,588,152 + AO353_07235 0.37 +1.3
1,588,153 - AO353_07235 0.37 +0.4
1,588,153 - AO353_07235 0.37 +1.3
1,588,153 - AO353_07235 0.37 -1.7
1,588,238 + AO353_07235 0.48 -0.6
1,588,238 + AO353_07235 0.48 -1.2
1,588,348 + AO353_07235 0.61 +1.5
1,588,349 - AO353_07235 0.61 +0.5
1,588,349 - AO353_07235 0.61 -0.2
1,588,349 - AO353_07235 0.61 +0.4
1,588,349 - AO353_07235 0.61 +0.7
1,588,389 - AO353_07235 0.66 +1.8
1,588,389 - AO353_07235 0.66 -0.1
1,588,453 - AO353_07235 0.74 -0.0
1,588,453 - AO353_07235 0.74 +0.0
1,588,557 + AO353_07235 0.87 -0.6
1,589,377 + -1.9
1,589,377 + -1.3
1,589,377 + -0.4
1,589,377 + -0.3
1,589,377 + -1.5
1,589,377 + +0.8
1,589,377 + +1.1
1,589,377 + +0.5
1,589,377 + -0.2
1,589,377 + -0.0
1,589,377 + +0.1
1,589,377 + -0.6
1,589,377 + +0.6
1,589,377 + +0.4
1,589,377 + -0.6
1,589,377 + -1.9
1,589,377 + -0.9
1,589,377 + -1.7
1,589,377 + -0.9
1,589,377 + -1.2
1,589,378 - +1.3
1,589,378 - -0.5
1,589,378 - +0.5
1,589,378 - -0.6
1,589,378 - +0.5
1,589,378 - +0.3
1,589,378 - +0.8
1,589,378 - +1.4
1,589,378 - -1.0
1,589,378 - +0.4
1,589,378 - -1.1
1,589,378 - -0.7
1,589,378 - -1.0
1,589,378 - -0.7
1,589,378 - +0.0
1,589,378 - -1.3
1,589,378 - -0.6
1,589,378 - -0.2
1,589,378 - -0.7
1,589,378 - -0.0
1,589,378 - -2.4
1,589,379 + +0.7
1,589,379 + +0.7
1,589,379 + -0.7
1,589,379 + -0.3
1,589,379 + +0.2
1,589,379 + -0.7
1,589,379 + +0.4
1,589,380 - -0.4
1,589,380 - +1.8
1,589,380 - +2.1
1,589,380 - +0.5
1,589,380 - +0.3
1,589,380 - +1.1
1,589,430 + -0.7
1,589,430 + -0.3
1,589,430 + -1.8
1,589,430 + -1.1
1,589,430 + +0.0
1,589,430 + -0.2
1,589,430 + -0.2
1,589,430 + -0.4
1,589,431 - -0.3
1,589,431 - -0.8
1,589,433 + -0.7
1,589,433 + -0.2
1,589,433 + +0.1
1,589,433 + -2.1
1,589,433 + +0.9
1,589,433 + -0.7
1,589,434 - -0.1
1,589,434 - -0.5
1,589,445 + +0.6
1,589,446 - -0.2
1,589,446 - -0.2
1,589,477 - +0.8
1,589,477 - -0.6
1,589,477 - -0.1
1,589,504 + -0.4
1,589,504 + +0.8
1,589,504 + -0.7
1,589,504 + -0.2
1,589,504 + -0.1
1,589,504 + -0.3
1,589,504 + +0.4
1,589,504 + +0.0
1,589,505 - +0.3
1,589,505 - +0.1
1,589,505 - -0.2
1,589,505 - +0.1
1,589,550 - AO353_07245 0.11 -0.0
1,589,550 - AO353_07245 0.11 -0.3
1,589,561 - AO353_07245 0.11 -0.3
1,589,561 - AO353_07245 0.11 -0.1
1,589,620 + AO353_07245 0.17 +0.1
1,589,620 + AO353_07245 0.17 +1.0
1,589,620 + AO353_07245 0.17 -0.2
1,589,620 + AO353_07245 0.17 -0.2
1,589,621 - AO353_07245 0.17 -0.6
1,589,686 + AO353_07245 0.22 +1.5
1,589,686 + AO353_07245 0.22 +0.4
1,589,686 + AO353_07245 0.22 -0.4
1,589,686 + AO353_07245 0.22 +0.5
1,589,686 + AO353_07245 0.22 -0.4
1,589,687 - AO353_07245 0.22 +1.3
1,589,687 - AO353_07245 0.22 -0.4
1,589,724 + AO353_07245 0.26 +1.3
1,589,724 + AO353_07245 0.26 +1.3
1,589,724 + AO353_07245 0.26 +0.4
1,589,724 + AO353_07245 0.26 -1.6
1,589,724 + AO353_07245 0.26 -0.8
1,589,725 - AO353_07245 0.26 +0.7
1,589,725 - AO353_07245 0.26 -0.7
1,589,725 - AO353_07245 0.26 +0.6
1,589,725 - AO353_07245 0.26 -0.2
1,589,725 - AO353_07245 0.26 +0.9
1,589,725 - AO353_07245 0.26 -0.3
1,589,725 - AO353_07245 0.26 +0.3
1,589,725 - AO353_07245 0.26 -0.2
1,589,725 - AO353_07245 0.26 +0.2
1,589,725 - AO353_07245 0.26 +1.5
1,589,725 - AO353_07245 0.26 -1.7
1,589,725 - AO353_07245 0.26 -0.4
1,589,725 - AO353_07245 0.26 +1.7
1,589,725 - AO353_07245 0.26 +0.8
1,589,892 + AO353_07245 0.40 +2.1
1,589,892 + AO353_07245 0.40 +0.8
1,589,892 + AO353_07245 0.40 +0.4
1,589,892 + AO353_07245 0.40 +1.6
1,589,892 + AO353_07245 0.40 -1.2
1,589,893 - AO353_07245 0.40 -0.4
1,589,893 - AO353_07245 0.40 -0.2
1,589,893 - AO353_07245 0.40 +1.3
1,589,893 - AO353_07245 0.40 +1.3
1,589,893 - AO353_07245 0.40 -0.1
1,589,893 - AO353_07245 0.40 -0.2
1,589,976 + AO353_07245 0.48 -0.2
1,589,976 + AO353_07245 0.48 -2.1
1,589,976 + AO353_07245 0.48 -0.2
1,589,976 + AO353_07245 0.48 +0.1
1,589,976 + AO353_07245 0.48 -0.2
1,589,976 + AO353_07245 0.48 -2.0
1,589,977 - AO353_07245 0.48 +0.5
1,589,977 - AO353_07245 0.48 -1.7
1,589,977 - AO353_07245 0.48 -1.3
1,590,084 + AO353_07245 0.57 -2.0
1,590,084 + AO353_07245 0.57 -0.7
1,590,084 + AO353_07245 0.57 +0.5
1,590,084 + AO353_07245 0.57 +0.1
1,590,085 - AO353_07245 0.57 -0.7
1,590,085 - AO353_07245 0.57 -1.6
1,590,085 - AO353_07245 0.57 +0.7
1,590,085 - AO353_07245 0.57 +1.1
1,590,085 - AO353_07245 0.57 -0.3
1,590,085 - AO353_07245 0.57 +1.6
1,590,085 - AO353_07245 0.57 +0.3
1,590,085 - AO353_07245 0.57 +1.8
1,590,085 - AO353_07245 0.57 +0.5
1,590,132 - AO353_07245 0.61 +0.3
1,590,255 + AO353_07245 0.72 +1.3
1,590,256 - AO353_07245 0.72 +0.1
1,590,256 - AO353_07245 0.72 +0.1
1,590,256 - AO353_07245 0.72 +0.8
1,590,333 + AO353_07245 0.79 +0.1

Or see this region's nucleotide sequence