Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04285 and AO353_04290 are separated by 176 nucleotides AO353_04290 and AO353_04295 are separated by 260 nucleotides
AO353_04285: AO353_04285 - spermidine/putrescine ABC transporter permease, at 922,187 to 923,029
_04285
AO353_04290: AO353_04290 - 1-pyrroline dehydrogenase, at 923,206 to 924,630
_04290
AO353_04295: AO353_04295 - amino acid permease, at 924,891 to 926,378
_04295
Position (kb) 923
924
925 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 922.664 kb on + strand, within AO353_04285 at 922.664 kb on + strand, within AO353_04285 at 922.665 kb on - strand, within AO353_04285 at 922.665 kb on - strand, within AO353_04285 at 922.665 kb on - strand, within AO353_04285 at 922.694 kb on - strand, within AO353_04285 at 922.694 kb on - strand, within AO353_04285 at 922.700 kb on + strand, within AO353_04285 at 922.700 kb on + strand, within AO353_04285 at 922.701 kb on - strand, within AO353_04285 at 922.758 kb on - strand, within AO353_04285 at 922.758 kb on - strand, within AO353_04285 at 922.979 kb on + strand at 922.979 kb on + strand at 922.979 kb on + strand at 922.980 kb on - strand at 922.980 kb on - strand at 922.982 kb on + strand at 922.982 kb on + strand at 922.982 kb on + strand at 922.983 kb on - strand at 922.983 kb on - strand at 922.983 kb on - strand at 923.024 kb on - strand at 923.027 kb on + strand at 923.027 kb on + strand at 923.027 kb on + strand at 923.027 kb on + strand at 923.027 kb on + strand at 923.028 kb on - strand at 923.028 kb on - strand at 923.028 kb on - strand at 923.028 kb on - strand at 923.028 kb on - strand at 923.041 kb on + strand at 923.041 kb on + strand at 923.042 kb on - strand at 923.122 kb on + strand at 923.122 kb on + strand at 923.122 kb on + strand at 923.123 kb on - strand at 923.123 kb on - strand at 923.123 kb on - strand at 923.205 kb on + strand at 923.205 kb on + strand at 923.206 kb on - strand at 923.267 kb on + strand at 923.292 kb on - strand at 923.297 kb on + strand at 923.297 kb on + strand at 923.482 kb on + strand, within AO353_04290 at 923.483 kb on - strand, within AO353_04290 at 923.483 kb on - strand, within AO353_04290 at 923.525 kb on + strand, within AO353_04290 at 923.525 kb on + strand, within AO353_04290 at 923.525 kb on + strand, within AO353_04290 at 923.525 kb on + strand, within AO353_04290 at 923.525 kb on + strand, within AO353_04290 at 923.525 kb on + strand, within AO353_04290 at 923.525 kb on + strand, within AO353_04290 at 923.525 kb on + strand, within AO353_04290 at 923.525 kb on + strand, within AO353_04290 at 923.526 kb on - strand, within AO353_04290 at 923.526 kb on - strand, within AO353_04290 at 923.526 kb on - strand, within AO353_04290 at 923.526 kb on - strand, within AO353_04290 at 923.581 kb on + strand, within AO353_04290 at 923.581 kb on + strand, within AO353_04290 at 923.581 kb on + strand, within AO353_04290 at 923.581 kb on + strand, within AO353_04290 at 923.581 kb on + strand, within AO353_04290 at 923.582 kb on - strand, within AO353_04290 at 923.653 kb on + strand, within AO353_04290 at 923.653 kb on + strand, within AO353_04290 at 923.654 kb on - strand, within AO353_04290 at 923.654 kb on - strand, within AO353_04290 at 923.654 kb on - strand, within AO353_04290 at 923.706 kb on + strand at 923.765 kb on + strand, within AO353_04290 at 923.765 kb on + strand, within AO353_04290 at 923.766 kb on - strand, within AO353_04290 at 923.792 kb on + strand, within AO353_04290 at 923.793 kb on - strand, within AO353_04290 at 923.820 kb on + strand, within AO353_04290 at 923.821 kb on - strand, within AO353_04290 at 924.006 kb on + strand, within AO353_04290 at 924.007 kb on - strand, within AO353_04290 at 924.007 kb on - strand, within AO353_04290 at 924.025 kb on + strand, within AO353_04290 at 924.026 kb on - strand, within AO353_04290 at 924.026 kb on - strand, within AO353_04290 at 924.026 kb on - strand, within AO353_04290 at 924.026 kb on - strand, within AO353_04290 at 924.064 kb on + strand, within AO353_04290 at 924.064 kb on + strand, within AO353_04290 at 924.065 kb on - strand, within AO353_04290 at 924.065 kb on - strand, within AO353_04290 at 924.082 kb on + strand, within AO353_04290 at 924.082 kb on + strand, within AO353_04290 at 924.083 kb on - strand, within AO353_04290 at 924.083 kb on - strand, within AO353_04290 at 924.083 kb on - strand, within AO353_04290 at 924.130 kb on + strand, within AO353_04290 at 924.130 kb on + strand, within AO353_04290 at 924.131 kb on - strand, within AO353_04290 at 924.131 kb on - strand, within AO353_04290 at 924.131 kb on - strand, within AO353_04290 at 924.131 kb on - strand, within AO353_04290 at 924.131 kb on - strand, within AO353_04290 at 924.485 kb on - strand, within AO353_04290 at 924.485 kb on - strand, within AO353_04290 at 924.504 kb on + strand at 924.560 kb on - strand at 924.580 kb on + strand at 924.580 kb on + strand at 924.580 kb on + strand at 924.580 kb on + strand at 924.580 kb on + strand at 924.580 kb on + strand at 924.580 kb on + strand at 924.581 kb on - strand at 924.581 kb on - strand at 924.595 kb on + strand at 924.595 kb on + strand at 924.595 kb on + strand at 924.595 kb on + strand at 924.595 kb on + strand at 924.595 kb on + strand at 924.596 kb on - strand at 924.596 kb on - strand at 924.596 kb on - strand at 924.596 kb on - strand at 924.596 kb on - strand at 924.596 kb on - strand at 924.596 kb on - strand at 924.596 kb on - strand at 924.629 kb on - strand at 924.642 kb on + strand at 924.642 kb on + strand at 924.642 kb on + strand at 924.642 kb on + strand at 924.643 kb on - strand at 924.643 kb on - strand at 924.643 kb on - strand at 924.643 kb on - strand at 924.643 kb on - strand at 924.643 kb on - strand at 924.643 kb on - strand at 924.643 kb on - strand at 924.728 kb on + strand at 924.728 kb on + strand at 924.728 kb on + strand at 924.728 kb on + strand at 924.728 kb on + strand at 924.729 kb on - strand at 924.729 kb on - strand at 924.729 kb on - strand at 924.729 kb on - strand at 924.729 kb on - strand at 924.729 kb on - strand at 924.788 kb on + strand at 924.788 kb on + strand at 924.789 kb on - strand at 924.806 kb on + strand at 924.807 kb on - strand at 924.807 kb on - strand at 924.807 kb on - strand at 924.901 kb on + strand at 924.901 kb on + strand at 924.901 kb on + strand at 924.901 kb on + strand at 924.901 kb on + strand at 924.902 kb on - strand at 924.946 kb on + strand at 924.946 kb on + strand at 924.946 kb on + strand at 924.946 kb on + strand at 924.947 kb on - strand at 924.960 kb on + strand at 924.960 kb on + strand at 924.961 kb on - strand at 924.991 kb on + strand at 925.020 kb on + strand at 925.020 kb on + strand at 925.021 kb on - strand at 925.021 kb on - strand at 925.021 kb on - strand at 925.021 kb on - strand at 925.021 kb on - strand at 925.021 kb on - strand at 925.021 kb on - strand at 925.021 kb on - strand at 925.037 kb on - strand at 925.044 kb on + strand, within AO353_04295 at 925.044 kb on + strand, within AO353_04295 at 925.044 kb on + strand, within AO353_04295 at 925.044 kb on + strand, within AO353_04295 at 925.044 kb on + strand, within AO353_04295 at 925.044 kb on + strand, within AO353_04295 at 925.045 kb on - strand, within AO353_04295 at 925.045 kb on - strand, within AO353_04295 at 925.045 kb on - strand, within AO353_04295 at 925.046 kb on + strand, within AO353_04295 at 925.046 kb on + strand, within AO353_04295 at 925.046 kb on + strand, within AO353_04295 at 925.046 kb on + strand, within AO353_04295 at 925.046 kb on + strand, within AO353_04295 at 925.047 kb on - strand, within AO353_04295 at 925.047 kb on - strand, within AO353_04295 at 925.098 kb on + strand, within AO353_04295 at 925.098 kb on + strand, within AO353_04295 at 925.098 kb on + strand, within AO353_04295 at 925.239 kb on + strand, within AO353_04295 at 925.239 kb on + strand, within AO353_04295 at 925.239 kb on + strand, within AO353_04295 at 925.239 kb on + strand, within AO353_04295 at 925.239 kb on + strand, within AO353_04295 at 925.239 kb on + strand, within AO353_04295 at 925.239 kb on + strand, within AO353_04295 at 925.240 kb on - strand, within AO353_04295 at 925.240 kb on - strand, within AO353_04295 at 925.240 kb on - strand, within AO353_04295 at 925.293 kb on + strand, within AO353_04295 at 925.464 kb on + strand, within AO353_04295 at 925.464 kb on + strand, within AO353_04295 at 925.464 kb on + strand, within AO353_04295 at 925.464 kb on + strand, within AO353_04295 at 925.465 kb on - strand, within AO353_04295 at 925.465 kb on - strand, within AO353_04295 at 925.465 kb on - strand, within AO353_04295 at 925.520 kb on + strand, within AO353_04295 at 925.539 kb on + strand, within AO353_04295 at 925.540 kb on - strand, within AO353_04295 at 925.540 kb on - strand, within AO353_04295 at 925.540 kb on - strand, within AO353_04295 at 925.540 kb on - strand, within AO353_04295 at 925.584 kb on + strand, within AO353_04295 at 925.584 kb on + strand, within AO353_04295 at 925.584 kb on + strand, within AO353_04295 at 925.584 kb on + strand, within AO353_04295 at 925.584 kb on + strand, within AO353_04295 at 925.584 kb on + strand, within AO353_04295 at 925.585 kb on - strand, within AO353_04295 at 925.585 kb on - strand, within AO353_04295 at 925.585 kb on - strand, within AO353_04295 at 925.588 kb on - strand, within AO353_04295
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 922,664 + AO353_04285 0.57 -0.6 922,664 + AO353_04285 0.57 -0.3 922,665 - AO353_04285 0.57 -0.9 922,665 - AO353_04285 0.57 -1.0 922,665 - AO353_04285 0.57 +0.2 922,694 - AO353_04285 0.60 -1.1 922,694 - AO353_04285 0.60 +0.7 922,700 + AO353_04285 0.61 -0.2 922,700 + AO353_04285 0.61 -2.6 922,701 - AO353_04285 0.61 -0.4 922,758 - AO353_04285 0.68 -0.5 922,758 - AO353_04285 0.68 +0.4 922,979 + -0.8 922,979 + -0.5 922,979 + -0.2 922,980 - +2.5 922,980 - +0.7 922,982 + +0.2 922,982 + -1.1 922,982 + -0.2 922,983 - +0.3 922,983 - -0.8 922,983 - -0.3 923,024 - +0.7 923,027 + -1.4 923,027 + -0.7 923,027 + -1.7 923,027 + -1.2 923,027 + -0.2 923,028 - +0.0 923,028 - +0.2 923,028 - -0.2 923,028 - -0.3 923,028 - -1.4 923,041 + -0.9 923,041 + +0.7 923,042 - +0.3 923,122 + +0.8 923,122 + -1.7 923,122 + -0.4 923,123 - +0.7 923,123 - -1.3 923,123 - +1.0 923,205 + -0.3 923,205 + -2.0 923,206 - +0.4 923,267 + -0.5 923,292 - -0.8 923,297 + -0.1 923,297 + -0.0 923,482 + AO353_04290 0.19 -0.9 923,483 - AO353_04290 0.19 -0.4 923,483 - AO353_04290 0.19 -0.0 923,525 + AO353_04290 0.22 +0.0 923,525 + AO353_04290 0.22 -0.2 923,525 + AO353_04290 0.22 +0.5 923,525 + AO353_04290 0.22 +0.4 923,525 + AO353_04290 0.22 +0.4 923,525 + AO353_04290 0.22 +2.1 923,525 + AO353_04290 0.22 -0.5 923,525 + AO353_04290 0.22 -0.0 923,525 + AO353_04290 0.22 +0.2 923,526 - AO353_04290 0.22 +0.1 923,526 - AO353_04290 0.22 -0.5 923,526 - AO353_04290 0.22 +0.1 923,526 - AO353_04290 0.22 +1.0 923,581 + AO353_04290 0.26 -1.6 923,581 + AO353_04290 0.26 -0.6 923,581 + AO353_04290 0.26 -1.9 923,581 + AO353_04290 0.26 +1.1 923,581 + AO353_04290 0.26 +2.2 923,582 - AO353_04290 0.26 -1.3 923,653 + AO353_04290 0.31 -1.3 923,653 + AO353_04290 0.31 -0.2 923,654 - AO353_04290 0.31 +1.2 923,654 - AO353_04290 0.31 +0.1 923,654 - AO353_04290 0.31 +0.2 923,706 + +2.5 923,765 + AO353_04290 0.39 -1.1 923,765 + AO353_04290 0.39 -0.5 923,766 - AO353_04290 0.39 -0.7 923,792 + AO353_04290 0.41 -0.8 923,793 - AO353_04290 0.41 -2.5 923,820 + AO353_04290 0.43 -0.0 923,821 - AO353_04290 0.43 +0.8 924,006 + AO353_04290 0.56 -0.5 924,007 - AO353_04290 0.56 -0.4 924,007 - AO353_04290 0.56 -1.4 924,025 + AO353_04290 0.57 +0.4 924,026 - AO353_04290 0.58 -1.2 924,026 - AO353_04290 0.58 +0.8 924,026 - AO353_04290 0.58 -0.3 924,026 - AO353_04290 0.58 -0.0 924,064 + AO353_04290 0.60 -0.1 924,064 + AO353_04290 0.60 +0.6 924,065 - AO353_04290 0.60 +0.9 924,065 - AO353_04290 0.60 -1.3 924,082 + AO353_04290 0.61 +0.8 924,082 + AO353_04290 0.61 +1.8 924,083 - AO353_04290 0.62 +0.6 924,083 - AO353_04290 0.62 -0.7 924,083 - AO353_04290 0.62 +0.7 924,130 + AO353_04290 0.65 -1.6 924,130 + AO353_04290 0.65 -1.4 924,131 - AO353_04290 0.65 -0.2 924,131 - AO353_04290 0.65 +0.9 924,131 - AO353_04290 0.65 -1.3 924,131 - AO353_04290 0.65 -0.1 924,131 - AO353_04290 0.65 -0.3 924,485 - AO353_04290 0.90 -1.9 924,485 - AO353_04290 0.90 -1.8 924,504 + -0.3 924,560 - -0.7 924,580 + -0.8 924,580 + +1.7 924,580 + -1.2 924,580 + -0.1 924,580 + +0.1 924,580 + -1.3 924,580 + -2.5 924,581 - +0.3 924,581 - -1.5 924,595 + -0.7 924,595 + -0.3 924,595 + -1.6 924,595 + -0.3 924,595 + +0.2 924,595 + +2.5 924,596 - -0.9 924,596 - +0.7 924,596 - -0.6 924,596 - +1.0 924,596 - +0.4 924,596 - -0.5 924,596 - -1.2 924,596 - -0.5 924,629 - +0.5 924,642 + -1.8 924,642 + -0.8 924,642 + +0.2 924,642 + +0.5 924,643 - -1.3 924,643 - +1.0 924,643 - -2.0 924,643 - +0.4 924,643 - -0.2 924,643 - +1.3 924,643 - -1.3 924,643 - -0.6 924,728 + +1.5 924,728 + +1.2 924,728 + -0.3 924,728 + -1.0 924,728 + +0.3 924,729 - -0.0 924,729 - -1.5 924,729 - +0.4 924,729 - -0.5 924,729 - +0.1 924,729 - -0.5 924,788 + +0.2 924,788 + -0.8 924,789 - -0.1 924,806 + +1.2 924,807 - -0.7 924,807 - -1.8 924,807 - +1.0 924,901 + +0.4 924,901 + -0.6 924,901 + -1.0 924,901 + -0.4 924,901 + +0.7 924,902 - -1.8 924,946 + +1.1 924,946 + -1.0 924,946 + +1.5 924,946 + -0.1 924,947 - -2.1 924,960 + +0.7 924,960 + +1.1 924,961 - +2.0 924,991 + +0.3 925,020 + +1.0 925,020 + +0.4 925,021 - -0.3 925,021 - -1.1 925,021 - -0.2 925,021 - -0.3 925,021 - -0.4 925,021 - -0.6 925,021 - -0.7 925,021 - -0.3 925,037 - -0.3 925,044 + AO353_04295 0.10 +3.0 925,044 + AO353_04295 0.10 +1.0 925,044 + AO353_04295 0.10 -0.3 925,044 + AO353_04295 0.10 -0.8 925,044 + AO353_04295 0.10 -0.0 925,044 + AO353_04295 0.10 -0.8 925,045 - AO353_04295 0.10 -1.5 925,045 - AO353_04295 0.10 -0.3 925,045 - AO353_04295 0.10 -0.9 925,046 + AO353_04295 0.10 +0.7 925,046 + AO353_04295 0.10 -0.3 925,046 + AO353_04295 0.10 -0.2 925,046 + AO353_04295 0.10 -0.5 925,046 + AO353_04295 0.10 -1.5 925,047 - AO353_04295 0.10 -0.1 925,047 - AO353_04295 0.10 -1.7 925,098 + AO353_04295 0.14 +0.5 925,098 + AO353_04295 0.14 +0.5 925,098 + AO353_04295 0.14 +1.2 925,239 + AO353_04295 0.23 +0.4 925,239 + AO353_04295 0.23 +1.4 925,239 + AO353_04295 0.23 -0.6 925,239 + AO353_04295 0.23 +0.1 925,239 + AO353_04295 0.23 +0.4 925,239 + AO353_04295 0.23 -1.0 925,239 + AO353_04295 0.23 +1.5 925,240 - AO353_04295 0.23 -0.6 925,240 - AO353_04295 0.23 +0.3 925,240 - AO353_04295 0.23 -1.0 925,293 + AO353_04295 0.27 -0.1 925,464 + AO353_04295 0.39 +0.3 925,464 + AO353_04295 0.39 +2.1 925,464 + AO353_04295 0.39 +0.7 925,464 + AO353_04295 0.39 +0.1 925,465 - AO353_04295 0.39 -1.2 925,465 - AO353_04295 0.39 -1.6 925,465 - AO353_04295 0.39 -0.6 925,520 + AO353_04295 0.42 -0.5 925,539 + AO353_04295 0.44 -1.2 925,540 - AO353_04295 0.44 +1.9 925,540 - AO353_04295 0.44 +0.5 925,540 - AO353_04295 0.44 +0.8 925,540 - AO353_04295 0.44 -1.2 925,584 + AO353_04295 0.47 -0.8 925,584 + AO353_04295 0.47 +0.2 925,584 + AO353_04295 0.47 +0.2 925,584 + AO353_04295 0.47 +2.4 925,584 + AO353_04295 0.47 -1.6 925,584 + AO353_04295 0.47 -0.0 925,585 - AO353_04295 0.47 -0.0 925,585 - AO353_04295 0.47 -1.5 925,585 - AO353_04295 0.47 -1.5 925,588 - AO353_04295 0.47 +0.2
Or see this region's nucleotide sequence