Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04270

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04265 and AO353_04270 are separated by 87 nucleotidesAO353_04270 and AO353_04275 are separated by 237 nucleotides AO353_04265: AO353_04265 - 1-pyrroline dehydrogenase, at 917,274 to 918,734 _04265 AO353_04270: AO353_04270 - spermidine/putrescine ABC transporter substrate-binding protein, at 918,822 to 919,973 _04270 AO353_04275: AO353_04275 - polyamine ABC transporter ATP-binding protein, at 920,211 to 921,248 _04275 Position (kb) 918 919 920Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 917.891 kb on + strand, within AO353_04265at 917.891 kb on + strand, within AO353_04265at 917.892 kb on - strand, within AO353_04265at 917.892 kb on - strand, within AO353_04265at 917.892 kb on - strand, within AO353_04265at 917.892 kb on - strand, within AO353_04265at 917.892 kb on - strand, within AO353_04265at 918.020 kb on + strand, within AO353_04265at 918.020 kb on + strand, within AO353_04265at 918.020 kb on + strand, within AO353_04265at 918.021 kb on - strand, within AO353_04265at 918.021 kb on - strand, within AO353_04265at 918.021 kb on - strand, within AO353_04265at 918.021 kb on - strand, within AO353_04265at 918.021 kb on - strand, within AO353_04265at 918.074 kb on + strand, within AO353_04265at 918.105 kb on + strand, within AO353_04265at 918.105 kb on + strand, within AO353_04265at 918.105 kb on + strand, within AO353_04265at 918.105 kb on + strand, within AO353_04265at 918.105 kb on + strand, within AO353_04265at 918.106 kb on - strand, within AO353_04265at 918.106 kb on - strand, within AO353_04265at 918.106 kb on - strand, within AO353_04265at 918.106 kb on - strandat 918.106 kb on - strand, within AO353_04265at 918.106 kb on - strand, within AO353_04265at 918.106 kb on - strand, within AO353_04265at 918.106 kb on - strand, within AO353_04265at 918.106 kb on - strand, within AO353_04265at 918.106 kb on - strand, within AO353_04265at 918.106 kb on - strand, within AO353_04265at 918.106 kb on - strand, within AO353_04265at 918.111 kb on + strand, within AO353_04265at 918.112 kb on - strand, within AO353_04265at 918.112 kb on - strand, within AO353_04265at 918.112 kb on - strand, within AO353_04265at 918.114 kb on + strand, within AO353_04265at 918.114 kb on + strand, within AO353_04265at 918.114 kb on + strand, within AO353_04265at 918.114 kb on + strand, within AO353_04265at 918.114 kb on + strand, within AO353_04265at 918.115 kb on - strand, within AO353_04265at 918.115 kb on - strand, within AO353_04265at 918.115 kb on - strand, within AO353_04265at 918.115 kb on - strand, within AO353_04265at 918.115 kb on - strand, within AO353_04265at 918.115 kb on - strand, within AO353_04265at 918.115 kb on - strand, within AO353_04265at 918.115 kb on - strand, within AO353_04265at 918.115 kb on - strand, within AO353_04265at 918.115 kb on - strand, within AO353_04265at 918.153 kb on + strand, within AO353_04265at 918.153 kb on + strand, within AO353_04265at 918.154 kb on - strand, within AO353_04265at 918.154 kb on - strand, within AO353_04265at 918.154 kb on - strand, within AO353_04265at 918.154 kb on - strand, within AO353_04265at 918.369 kb on + strand, within AO353_04265at 918.369 kb on + strand, within AO353_04265at 918.369 kb on + strand, within AO353_04265at 918.370 kb on - strand, within AO353_04265at 918.372 kb on + strand, within AO353_04265at 918.373 kb on - strand, within AO353_04265at 918.505 kb on - strand, within AO353_04265at 918.661 kb on + strandat 918.661 kb on + strandat 918.661 kb on + strandat 918.661 kb on + strandat 918.662 kb on - strandat 918.662 kb on - strandat 918.662 kb on - strandat 918.684 kb on + strandat 918.684 kb on + strandat 918.684 kb on + strandat 918.685 kb on - strandat 918.685 kb on - strandat 918.685 kb on - strandat 918.685 kb on - strandat 918.732 kb on + strandat 918.733 kb on - strandat 918.733 kb on - strandat 918.741 kb on + strandat 918.799 kb on + strandat 918.800 kb on - strandat 918.800 kb on - strandat 918.803 kb on + strandat 918.803 kb on + strandat 918.803 kb on + strandat 918.803 kb on + strandat 918.803 kb on + strandat 918.803 kb on + strandat 918.803 kb on + strandat 918.803 kb on + strandat 918.803 kb on + strandat 918.804 kb on - strandat 918.804 kb on - strandat 918.804 kb on - strandat 918.804 kb on - strandat 918.865 kb on + strandat 918.957 kb on + strand, within AO353_04270at 918.957 kb on + strand, within AO353_04270at 918.958 kb on - strand, within AO353_04270at 918.987 kb on + strand, within AO353_04270at 918.988 kb on - strand, within AO353_04270at 918.988 kb on - strand, within AO353_04270at 918.988 kb on - strand, within AO353_04270at 919.161 kb on - strand, within AO353_04270at 919.161 kb on - strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.218 kb on + strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.219 kb on - strand, within AO353_04270at 919.239 kb on + strand, within AO353_04270at 919.240 kb on - strand, within AO353_04270at 919.251 kb on + strand, within AO353_04270at 919.251 kb on + strand, within AO353_04270at 919.252 kb on - strand, within AO353_04270at 919.252 kb on - strand, within AO353_04270at 919.278 kb on + strand, within AO353_04270at 919.278 kb on + strand, within AO353_04270at 919.278 kb on + strand, within AO353_04270at 919.279 kb on - strand, within AO353_04270at 919.279 kb on - strand, within AO353_04270at 919.279 kb on - strand, within AO353_04270at 919.279 kb on - strand, within AO353_04270at 919.279 kb on - strand, within AO353_04270at 919.307 kb on + strand, within AO353_04270at 919.307 kb on + strand, within AO353_04270at 919.307 kb on + strand, within AO353_04270at 919.307 kb on + strand, within AO353_04270at 919.307 kb on + strand, within AO353_04270at 919.308 kb on - strand, within AO353_04270at 919.308 kb on - strand, within AO353_04270at 919.380 kb on + strand, within AO353_04270at 919.380 kb on + strand, within AO353_04270at 919.380 kb on + strand, within AO353_04270at 919.380 kb on + strand, within AO353_04270at 919.380 kb on + strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.381 kb on - strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.395 kb on + strand, within AO353_04270at 919.396 kb on - strand, within AO353_04270at 919.396 kb on - strand, within AO353_04270at 919.396 kb on - strand, within AO353_04270at 919.396 kb on - strand, within AO353_04270at 919.396 kb on - strand, within AO353_04270at 919.396 kb on - strand, within AO353_04270at 919.416 kb on + strand, within AO353_04270at 919.417 kb on - strand, within AO353_04270at 919.417 kb on - strand, within AO353_04270at 919.459 kb on - strand, within AO353_04270at 919.479 kb on + strand, within AO353_04270at 919.479 kb on + strand, within AO353_04270at 919.479 kb on + strand, within AO353_04270at 919.479 kb on + strand, within AO353_04270at 919.479 kb on + strand, within AO353_04270at 919.531 kb on - strand, within AO353_04270at 919.602 kb on + strand, within AO353_04270at 919.602 kb on + strand, within AO353_04270at 919.602 kb on + strand, within AO353_04270at 919.602 kb on + strand, within AO353_04270at 919.602 kb on + strand, within AO353_04270at 919.603 kb on - strand, within AO353_04270at 919.603 kb on - strand, within AO353_04270at 919.603 kb on - strand, within AO353_04270at 919.603 kb on - strand, within AO353_04270at 919.603 kb on - strand, within AO353_04270at 919.603 kb on - strand, within AO353_04270at 919.725 kb on + strand, within AO353_04270at 919.725 kb on + strand, within AO353_04270at 919.726 kb on - strand, within AO353_04270at 919.726 kb on - strand, within AO353_04270at 919.771 kb on + strand, within AO353_04270at 919.772 kb on - strand, within AO353_04270at 919.926 kb on + strandat 919.926 kb on + strandat 919.926 kb on + strandat 919.927 kb on - strandat 919.927 kb on - strandat 919.927 kb on - strandat 919.927 kb on - strandat 919.927 kb on - strandat 919.927 kb on - strandat 919.947 kb on + strandat 919.947 kb on + strandat 919.947 kb on + strandat 919.947 kb on + strandat 919.948 kb on - strandat 919.948 kb on - strandat 919.948 kb on - strandat 919.967 kb on + strandat 919.971 kb on + strandat 919.971 kb on + strandat 919.971 kb on + strandat 919.971 kb on + strandat 919.972 kb on - strandat 919.972 kb on - strandat 919.972 kb on - strandat 919.972 kb on - strandat 919.972 kb on - strandat 920.056 kb on + strandat 920.056 kb on + strandat 920.057 kb on - strandat 920.128 kb on + strandat 920.128 kb on + strandat 920.128 kb on + strandat 920.128 kb on + strandat 920.128 kb on + strandat 920.129 kb on - strandat 920.481 kb on - strand, within AO353_04275at 920.481 kb on - strand, within AO353_04275at 920.481 kb on - strand, within AO353_04275at 920.505 kb on + strand, within AO353_04275at 920.505 kb on + strand, within AO353_04275at 920.506 kb on - strand, within AO353_04275at 920.600 kb on + strand, within AO353_04275at 920.600 kb on + strand, within AO353_04275at 920.877 kb on + strand, within AO353_04275at 920.877 kb on + strand, within AO353_04275at 920.877 kb on + strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275at 920.878 kb on - strand, within AO353_04275

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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917,891 + AO353_04265 0.42 -0.0
917,891 + AO353_04265 0.42 +2.1
917,892 - AO353_04265 0.42 +0.4
917,892 - AO353_04265 0.42 +2.3
917,892 - AO353_04265 0.42 +1.7
917,892 - AO353_04265 0.42 -0.1
917,892 - AO353_04265 0.42 +0.5
918,020 + AO353_04265 0.51 +0.8
918,020 + AO353_04265 0.51 +0.2
918,020 + AO353_04265 0.51 +1.5
918,021 - AO353_04265 0.51 -0.3
918,021 - AO353_04265 0.51 -0.6
918,021 - AO353_04265 0.51 +0.1
918,021 - AO353_04265 0.51 -1.5
918,021 - AO353_04265 0.51 -0.3
918,074 + AO353_04265 0.55 -1.4
918,105 + AO353_04265 0.57 -0.1
918,105 + AO353_04265 0.57 -0.2
918,105 + AO353_04265 0.57 +0.3
918,105 + AO353_04265 0.57 -0.8
918,105 + AO353_04265 0.57 +2.1
918,106 - AO353_04265 0.57 -0.3
918,106 - AO353_04265 0.57 -2.1
918,106 - AO353_04265 0.57 +1.1
918,106 - +2.5
918,106 - AO353_04265 0.57 -1.1
918,106 - AO353_04265 0.57 +0.8
918,106 - AO353_04265 0.57 +0.3
918,106 - AO353_04265 0.57 -0.5
918,106 - AO353_04265 0.57 -0.6
918,106 - AO353_04265 0.57 -1.6
918,106 - AO353_04265 0.57 -0.2
918,106 - AO353_04265 0.57 -0.8
918,111 + AO353_04265 0.57 +0.2
918,112 - AO353_04265 0.57 -0.8
918,112 - AO353_04265 0.57 -0.4
918,112 - AO353_04265 0.57 +1.5
918,114 + AO353_04265 0.57 +0.1
918,114 + AO353_04265 0.57 +0.5
918,114 + AO353_04265 0.57 -0.0
918,114 + AO353_04265 0.57 +1.7
918,114 + AO353_04265 0.57 -0.4
918,115 - AO353_04265 0.58 -0.1
918,115 - AO353_04265 0.58 -2.3
918,115 - AO353_04265 0.58 +0.3
918,115 - AO353_04265 0.58 +0.2
918,115 - AO353_04265 0.58 +0.1
918,115 - AO353_04265 0.58 -0.0
918,115 - AO353_04265 0.58 -0.0
918,115 - AO353_04265 0.58 -1.0
918,115 - AO353_04265 0.58 +0.2
918,115 - AO353_04265 0.58 +0.5
918,153 + AO353_04265 0.60 +0.7
918,153 + AO353_04265 0.60 +0.4
918,154 - AO353_04265 0.60 +0.2
918,154 - AO353_04265 0.60 -1.0
918,154 - AO353_04265 0.60 -0.7
918,154 - AO353_04265 0.60 -0.9
918,369 + AO353_04265 0.75 +1.1
918,369 + AO353_04265 0.75 -0.5
918,369 + AO353_04265 0.75 -1.5
918,370 - AO353_04265 0.75 -0.9
918,372 + AO353_04265 0.75 -0.2
918,373 - AO353_04265 0.75 -0.0
918,505 - AO353_04265 0.84 -0.9
918,661 + -0.5
918,661 + +0.5
918,661 + +0.2
918,661 + -0.7
918,662 - -2.7
918,662 - +0.5
918,662 - -0.8
918,684 + -1.8
918,684 + +0.7
918,684 + +0.1
918,685 - +1.4
918,685 - -0.5
918,685 - +1.2
918,685 - -0.7
918,732 + -0.3
918,733 - -0.8
918,733 - +0.8
918,741 + +0.5
918,799 + +1.2
918,800 - -1.7
918,800 - -0.5
918,803 + +0.8
918,803 + -1.1
918,803 + +1.1
918,803 + +0.1
918,803 + -1.0
918,803 + -0.8
918,803 + +1.0
918,803 + +0.3
918,803 + +0.2
918,804 - -0.5
918,804 - +0.0
918,804 - -0.3
918,804 - +1.2
918,865 + +0.4
918,957 + AO353_04270 0.12 +1.8
918,957 + AO353_04270 0.12 -0.2
918,958 - AO353_04270 0.12 -0.9
918,987 + AO353_04270 0.14 -0.5
918,988 - AO353_04270 0.14 +1.1
918,988 - AO353_04270 0.14 -0.2
918,988 - AO353_04270 0.14 +0.4
919,161 - AO353_04270 0.29 -0.9
919,161 - AO353_04270 0.29 +0.3
919,218 + AO353_04270 0.34 -2.2
919,218 + AO353_04270 0.34 +0.4
919,218 + AO353_04270 0.34 -1.0
919,218 + AO353_04270 0.34 +0.5
919,218 + AO353_04270 0.34 +0.4
919,218 + AO353_04270 0.34 +0.4
919,218 + AO353_04270 0.34 +1.1
919,218 + AO353_04270 0.34 +0.2
919,219 - AO353_04270 0.34 +0.1
919,219 - AO353_04270 0.34 +0.6
919,219 - AO353_04270 0.34 -1.0
919,219 - AO353_04270 0.34 +0.8
919,219 - AO353_04270 0.34 -0.8
919,219 - AO353_04270 0.34 +1.0
919,219 - AO353_04270 0.34 +0.7
919,239 + AO353_04270 0.36 -0.8
919,240 - AO353_04270 0.36 -0.2
919,251 + AO353_04270 0.37 +0.5
919,251 + AO353_04270 0.37 +0.5
919,252 - AO353_04270 0.37 +1.0
919,252 - AO353_04270 0.37 -2.1
919,278 + AO353_04270 0.40 +0.5
919,278 + AO353_04270 0.40 +2.9
919,278 + AO353_04270 0.40 -0.2
919,279 - AO353_04270 0.40 +1.0
919,279 - AO353_04270 0.40 -1.8
919,279 - AO353_04270 0.40 -0.5
919,279 - AO353_04270 0.40 -0.5
919,279 - AO353_04270 0.40 -1.1
919,307 + AO353_04270 0.42 +0.1
919,307 + AO353_04270 0.42 -1.4
919,307 + AO353_04270 0.42 -1.1
919,307 + AO353_04270 0.42 -0.5
919,307 + AO353_04270 0.42 -0.3
919,308 - AO353_04270 0.42 -1.0
919,308 - AO353_04270 0.42 -0.1
919,380 + AO353_04270 0.48 -0.4
919,380 + AO353_04270 0.48 -2.2
919,380 + AO353_04270 0.48 -0.1
919,380 + AO353_04270 0.48 +0.3
919,380 + AO353_04270 0.48 -0.9
919,381 - AO353_04270 0.49 +0.1
919,381 - AO353_04270 0.49 -0.8
919,381 - AO353_04270 0.49 +1.0
919,381 - AO353_04270 0.49 +0.8
919,381 - AO353_04270 0.49 +1.5
919,381 - AO353_04270 0.49 -0.9
919,381 - AO353_04270 0.49 +0.3
919,381 - AO353_04270 0.49 +0.5
919,395 + AO353_04270 0.50 +1.2
919,395 + AO353_04270 0.50 -0.3
919,395 + AO353_04270 0.50 -0.9
919,395 + AO353_04270 0.50 -0.6
919,395 + AO353_04270 0.50 -1.3
919,395 + AO353_04270 0.50 +0.2
919,395 + AO353_04270 0.50 -1.2
919,395 + AO353_04270 0.50 -0.3
919,396 - AO353_04270 0.50 +1.5
919,396 - AO353_04270 0.50 -0.5
919,396 - AO353_04270 0.50 -0.5
919,396 - AO353_04270 0.50 -0.3
919,396 - AO353_04270 0.50 -1.4
919,396 - AO353_04270 0.50 -1.1
919,416 + AO353_04270 0.52 -1.4
919,417 - AO353_04270 0.52 +0.5
919,417 - AO353_04270 0.52 -1.5
919,459 - AO353_04270 0.55 +0.3
919,479 + AO353_04270 0.57 +1.3
919,479 + AO353_04270 0.57 +0.5
919,479 + AO353_04270 0.57 -0.9
919,479 + AO353_04270 0.57 +0.7
919,479 + AO353_04270 0.57 -1.6
919,531 - AO353_04270 0.62 -1.5
919,602 + AO353_04270 0.68 -1.3
919,602 + AO353_04270 0.68 -0.2
919,602 + AO353_04270 0.68 -0.0
919,602 + AO353_04270 0.68 +0.1
919,602 + AO353_04270 0.68 +0.2
919,603 - AO353_04270 0.68 -2.8
919,603 - AO353_04270 0.68 -0.5
919,603 - AO353_04270 0.68 -0.9
919,603 - AO353_04270 0.68 +0.8
919,603 - AO353_04270 0.68 -0.7
919,603 - AO353_04270 0.68 +0.4
919,725 + AO353_04270 0.78 +0.5
919,725 + AO353_04270 0.78 +0.8
919,726 - AO353_04270 0.78 +1.5
919,726 - AO353_04270 0.78 -0.5
919,771 + AO353_04270 0.82 +0.2
919,772 - AO353_04270 0.82 -0.1
919,926 + -0.3
919,926 + +1.7
919,926 + -1.2
919,927 - -0.2
919,927 - -0.8
919,927 - -0.9
919,927 - -0.5
919,927 - -1.8
919,927 - -0.5
919,947 + +0.2
919,947 + +0.8
919,947 + +0.7
919,947 + -0.6
919,948 - -1.0
919,948 - -0.5
919,948 - -0.3
919,967 + +0.1
919,971 + -0.5
919,971 + +0.0
919,971 + -0.6
919,971 + -0.2
919,972 - +0.2
919,972 - +0.5
919,972 - -0.8
919,972 - +0.5
919,972 - +0.5
920,056 + +0.4
920,056 + -0.5
920,057 - +0.3
920,128 + +1.1
920,128 + +1.1
920,128 + +1.0
920,128 + -1.7
920,128 + -0.0
920,129 - -1.7
920,481 - AO353_04275 0.26 +0.5
920,481 - AO353_04275 0.26 +0.5
920,481 - AO353_04275 0.26 -0.0
920,505 + AO353_04275 0.28 -1.2
920,505 + AO353_04275 0.28 +0.4
920,506 - AO353_04275 0.28 -0.2
920,600 + AO353_04275 0.37 -1.2
920,600 + AO353_04275 0.37 +0.8
920,877 + AO353_04275 0.64 +0.3
920,877 + AO353_04275 0.64 +0.8
920,877 + AO353_04275 0.64 -0.4
920,878 - AO353_04275 0.64 -0.5
920,878 - AO353_04275 0.64 -0.6
920,878 - AO353_04275 0.64 -0.8
920,878 - AO353_04275 0.64 +0.1
920,878 - AO353_04275 0.64 +0.7
920,878 - AO353_04275 0.64 -0.0
920,878 - AO353_04275 0.64 -0.5

Or see this region's nucleotide sequence