Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00970

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00960 and AO353_00965 are separated by 131 nucleotidesAO353_00965 and AO353_00970 are separated by 392 nucleotidesAO353_00970 and AO353_00975 are separated by 472 nucleotidesAO353_00975 and AO353_00980 are separated by 188 nucleotides AO353_00960: AO353_00960 - DNA-binding protein, at 216,861 to 217,187 _00960 AO353_00965: AO353_00965 - bacteriocin, at 217,319 to 217,663 _00965 AO353_00970: AO353_00970 - group II intron reverse transcriptase/maturase, at 218,056 to 219,477 _00970 AO353_00975: AO353_00975 - hypothetical protein, at 219,950 to 220,141 _00975 AO353_00980: AO353_00980 - hypothetical protein, at 220,330 to 220,650 _00980 Position (kb) 218 219 220Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 217.227 kb on + strandat 217.227 kb on + strandat 217.228 kb on - strandat 217.299 kb on + strandat 217.320 kb on + strandat 217.320 kb on + strandat 217.320 kb on + strandat 217.320 kb on + strandat 217.320 kb on + strandat 217.320 kb on + strandat 217.321 kb on - strandat 217.321 kb on - strandat 217.321 kb on - strandat 217.321 kb on - strandat 217.321 kb on - strandat 217.321 kb on - strandat 217.427 kb on + strand, within AO353_00965at 217.655 kb on + strandat 217.691 kb on + strandat 217.691 kb on + strandat 217.691 kb on + strandat 217.692 kb on - strandat 217.692 kb on - strandat 217.692 kb on - strandat 217.692 kb on - strandat 217.709 kb on + strandat 217.709 kb on + strandat 217.709 kb on + strandat 217.709 kb on + strandat 217.709 kb on + strandat 217.710 kb on - strandat 217.710 kb on - strandat 217.775 kb on + strandat 217.775 kb on + strandat 217.775 kb on + strandat 217.775 kb on + strandat 217.776 kb on - strandat 217.776 kb on - strandat 217.776 kb on - strandat 217.776 kb on - strandat 217.777 kb on + strandat 217.777 kb on + strandat 217.777 kb on + strandat 217.777 kb on + strandat 217.777 kb on + strandat 217.778 kb on - strandat 217.778 kb on - strandat 217.778 kb on - strandat 217.778 kb on - strandat 217.778 kb on - strandat 217.870 kb on - strandat 217.870 kb on - strandat 217.911 kb on + strandat 217.992 kb on - strandat 218.031 kb on + strandat 218.031 kb on + strandat 218.031 kb on + strandat 218.036 kb on - strandat 218.036 kb on - strandat 218.036 kb on - strandat 218.036 kb on - strandat 218.394 kb on - strand, within AO353_00970at 218.394 kb on - strand, within AO353_00970at 218.857 kb on + strand, within AO353_00970at 218.858 kb on - strand, within AO353_00970at 218.858 kb on - strand, within AO353_00970at 218.858 kb on - strand, within AO353_00970at 218.858 kb on - strand, within AO353_00970at 218.858 kb on - strand, within AO353_00970at 218.858 kb on - strand, within AO353_00970at 218.858 kb on - strand, within AO353_00970at 218.858 kb on - strand, within AO353_00970at 218.858 kb on - strand, within AO353_00970at 218.858 kb on - strand, within AO353_00970at 218.858 kb on - strand, within AO353_00970at 218.858 kb on - strand, within AO353_00970at 218.858 kb on - strand, within AO353_00970at 218.861 kb on + strandat 218.861 kb on + strand, within AO353_00970at 218.861 kb on + strand, within AO353_00970at 218.861 kb on + strand, within AO353_00970at 218.861 kb on + strand, within AO353_00970at 218.861 kb on + strand, within AO353_00970at 218.861 kb on + strand, within AO353_00970at 218.861 kb on + strand, within AO353_00970at 218.861 kb on + strand, within AO353_00970at 218.861 kb on + strand, within AO353_00970at 218.861 kb on + strand, within AO353_00970at 219.951 kb on + strandat 219.951 kb on + strandat 219.952 kb on - strandat 219.959 kb on + strandat 219.960 kb on - strandat 219.960 kb on - strandat 220.065 kb on + strand, within AO353_00975at 220.065 kb on + strand, within AO353_00975at 220.065 kb on + strand, within AO353_00975at 220.065 kb on + strand, within AO353_00975at 220.065 kb on + strand, within AO353_00975at 220.065 kb on + strand, within AO353_00975at 220.065 kb on + strand, within AO353_00975at 220.065 kb on + strand, within AO353_00975at 220.128 kb on + strandat 220.128 kb on + strandat 220.128 kb on + strandat 220.128 kb on + strandat 220.129 kb on - strandat 220.129 kb on - strandat 220.129 kb on - strandat 220.129 kb on - strandat 220.129 kb on - strandat 220.129 kb on - strandat 220.129 kb on - strandat 220.143 kb on + strandat 220.143 kb on + strandat 220.143 kb on + strandat 220.143 kb on + strandat 220.143 kb on + strandat 220.143 kb on + strandat 220.143 kb on + strandat 220.143 kb on + strandat 220.144 kb on - strandat 220.144 kb on - strandat 220.144 kb on - strandat 220.144 kb on - strandat 220.144 kb on - strandat 220.144 kb on - strandat 220.144 kb on - strandat 220.144 kb on - strandat 220.144 kb on - strandat 220.189 kb on + strandat 220.190 kb on - strandat 220.297 kb on + strandat 220.298 kb on - strandat 220.298 kb on - strandat 220.314 kb on + strandat 220.314 kb on + strandat 220.315 kb on - strandat 220.315 kb on - strandat 220.331 kb on + strandat 220.332 kb on - strandat 220.332 kb on - strandat 220.332 kb on - strandat 220.332 kb on - strandat 220.332 kb on - strandat 220.395 kb on + strand, within AO353_00980at 220.395 kb on + strand, within AO353_00980at 220.396 kb on - strand, within AO353_00980at 220.396 kb on - strand, within AO353_00980

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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217,227 + -0.8
217,227 + +0.9
217,228 - -0.8
217,299 + +0.3
217,320 + -0.1
217,320 + -0.5
217,320 + -1.9
217,320 + +0.7
217,320 + -0.8
217,320 + -1.2
217,321 - +0.9
217,321 - -0.0
217,321 - -0.3
217,321 - -1.2
217,321 - -0.5
217,321 - +0.7
217,427 + AO353_00965 0.31 -0.8
217,655 + +0.1
217,691 + -0.3
217,691 + -1.8
217,691 + +0.1
217,692 - -0.8
217,692 - -0.3
217,692 - -0.4
217,692 - +0.5
217,709 + -0.5
217,709 + -0.3
217,709 + -1.1
217,709 + -2.2
217,709 + +0.7
217,710 - +0.0
217,710 - +1.5
217,775 + +0.9
217,775 + -1.1
217,775 + +0.9
217,775 + -1.2
217,776 - +0.3
217,776 - -1.2
217,776 - +0.5
217,776 - +0.5
217,777 + +0.1
217,777 + +1.3
217,777 + +1.4
217,777 + +1.5
217,777 + -0.4
217,778 - +0.9
217,778 - +1.9
217,778 - -1.4
217,778 - +0.3
217,778 - -0.7
217,870 - -0.8
217,870 - +0.9
217,911 + +0.5
217,992 - -1.7
218,031 + -0.3
218,031 + -1.0
218,031 + -0.5
218,036 - -0.8
218,036 - +0.9
218,036 - +1.9
218,036 - -0.8
218,394 - AO353_00970 0.24 -0.3
218,394 - AO353_00970 0.24 +1.2
218,857 + AO353_00970 0.56 -0.2
218,858 - AO353_00970 0.56 +0.4
218,858 - AO353_00970 0.56 -1.4
218,858 - AO353_00970 0.56 -0.4
218,858 - AO353_00970 0.56 +0.1
218,858 - AO353_00970 0.56 +0.1
218,858 - AO353_00970 0.56 +0.2
218,858 - AO353_00970 0.56 +0.3
218,858 - AO353_00970 0.56 -1.4
218,858 - AO353_00970 0.56 -0.5
218,858 - AO353_00970 0.56 -0.6
218,858 - AO353_00970 0.56 -0.1
218,858 - AO353_00970 0.56 -1.6
218,858 - AO353_00970 0.56 -0.2
218,861 + +0.5
218,861 + AO353_00970 0.57 +1.5
218,861 + AO353_00970 0.57 -1.0
218,861 + AO353_00970 0.57 +1.9
218,861 + AO353_00970 0.57 -0.3
218,861 + AO353_00970 0.57 +0.2
218,861 + AO353_00970 0.57 -0.0
218,861 + AO353_00970 0.57 -0.9
218,861 + AO353_00970 0.57 -1.8
218,861 + AO353_00970 0.57 -2.0
218,861 + AO353_00970 0.57 -0.8
219,951 + -0.1
219,951 + -0.7
219,952 - -0.3
219,959 + -1.7
219,960 - +1.3
219,960 - +0.9
220,065 + AO353_00975 0.60 -0.4
220,065 + AO353_00975 0.60 -1.0
220,065 + AO353_00975 0.60 -0.0
220,065 + AO353_00975 0.60 -0.7
220,065 + AO353_00975 0.60 -0.5
220,065 + AO353_00975 0.60 -0.6
220,065 + AO353_00975 0.60 +0.2
220,065 + AO353_00975 0.60 -1.2
220,128 + -1.1
220,128 + -1.1
220,128 + -0.7
220,128 + -1.4
220,129 - -0.4
220,129 - -2.8
220,129 - -0.4
220,129 - -0.6
220,129 - -1.4
220,129 - +0.2
220,129 - -1.2
220,143 + +0.6
220,143 + -0.3
220,143 + -0.3
220,143 + -0.5
220,143 + -1.0
220,143 + -0.3
220,143 + -0.5
220,143 + -0.7
220,144 - -1.1
220,144 - -0.5
220,144 - +0.1
220,144 - -1.4
220,144 - +0.2
220,144 - -1.0
220,144 - -0.4
220,144 - -0.8
220,144 - +0.7
220,189 + +1.0
220,190 - +0.4
220,297 + -0.8
220,298 - -1.2
220,298 - +0.3
220,314 + +2.5
220,314 + -0.4
220,315 - -0.1
220,315 - -0.6
220,331 + +1.3
220,332 - -0.8
220,332 - +1.3
220,332 - -0.7
220,332 - -1.4
220,332 - +0.7
220,395 + AO353_00980 0.20 +0.3
220,395 + AO353_00980 0.20 +0.6
220,396 - AO353_00980 0.21 +0.7
220,396 - AO353_00980 0.21 -2.4

Or see this region's nucleotide sequence