Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00815 and AO353_00820 are separated by 10 nucleotides AO353_00820 and AO353_00825 are separated by 105 nucleotides
AO353_00815: AO353_00815 - Nitrate reductase (EC 1.7.99.4) <small>(from data)</small>, at 185,539 to 188,256
_00815
AO353_00820: AO353_00820 - uroporphyrin-III methyltransferase, at 188,267 to 189,040
_00820
AO353_00825: AO353_00825 - porin, at 189,146 to 190,120
_00825
Position (kb) 188
189
190 Strain fitness (log2 ratio) -2
-1
0
1 at 187.569 kb on + strand, within AO353_00815 at 187.570 kb on - strand, within AO353_00815 at 187.570 kb on - strand, within AO353_00815 at 187.570 kb on - strand, within AO353_00815 at 187.709 kb on + strand, within AO353_00815 at 187.709 kb on + strand, within AO353_00815 at 187.710 kb on - strand, within AO353_00815 at 187.710 kb on - strand, within AO353_00815 at 187.870 kb on + strand, within AO353_00815 at 187.870 kb on + strand, within AO353_00815 at 188.261 kb on + strand at 188.261 kb on + strand at 188.261 kb on + strand at 188.261 kb on + strand at 188.261 kb on + strand at 188.262 kb on - strand at 188.335 kb on - strand at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.359 kb on - strand, within AO353_00820 at 188.359 kb on - strand, within AO353_00820 at 188.359 kb on - strand, within AO353_00820 at 188.359 kb on - strand, within AO353_00820 at 188.489 kb on + strand, within AO353_00820 at 188.647 kb on + strand, within AO353_00820 at 188.647 kb on + strand, within AO353_00820 at 188.648 kb on - strand, within AO353_00820 at 188.682 kb on + strand, within AO353_00820 at 188.722 kb on + strand, within AO353_00820 at 188.722 kb on + strand, within AO353_00820 at 188.723 kb on - strand, within AO353_00820 at 188.765 kb on + strand, within AO353_00820 at 188.765 kb on + strand, within AO353_00820 at 188.765 kb on + strand, within AO353_00820 at 188.765 kb on + strand, within AO353_00820 at 188.765 kb on + strand, within AO353_00820 at 188.765 kb on + strand, within AO353_00820 at 188.766 kb on - strand, within AO353_00820 at 188.766 kb on - strand, within AO353_00820 at 188.766 kb on - strand, within AO353_00820 at 188.766 kb on - strand, within AO353_00820 at 188.766 kb on - strand, within AO353_00820 at 189.007 kb on + strand at 189.008 kb on - strand at 189.008 kb on - strand at 189.038 kb on + strand at 189.038 kb on + strand at 189.038 kb on + strand at 189.038 kb on + strand at 189.038 kb on + strand at 189.039 kb on - strand at 189.039 kb on - strand at 189.039 kb on - strand at 189.039 kb on - strand at 189.039 kb on - strand at 189.039 kb on - strand at 189.088 kb on - strand at 189.135 kb on + strand at 189.144 kb on - strand at 189.144 kb on - strand at 189.147 kb on + strand at 189.148 kb on - strand at 189.148 kb on - strand at 189.148 kb on - strand at 189.177 kb on - strand at 189.334 kb on - strand, within AO353_00825 at 189.371 kb on + strand, within AO353_00825 at 189.637 kb on - strand, within AO353_00825 at 189.681 kb on + strand, within AO353_00825 at 189.682 kb on - strand, within AO353_00825 at 189.682 kb on - strand, within AO353_00825 at 189.682 kb on - strand, within AO353_00825 at 189.790 kb on - strand, within AO353_00825 at 189.910 kb on - strand, within AO353_00825 at 189.946 kb on - strand, within AO353_00825
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 187,569 + AO353_00815 0.75 -1.1 187,570 - AO353_00815 0.75 -0.3 187,570 - AO353_00815 0.75 -0.5 187,570 - AO353_00815 0.75 +0.7 187,709 + AO353_00815 0.80 -0.5 187,709 + AO353_00815 0.80 -2.3 187,710 - AO353_00815 0.80 -2.0 187,710 - AO353_00815 0.80 -1.2 187,870 + AO353_00815 0.86 -0.8 187,870 + AO353_00815 0.86 -2.1 188,261 + -1.7 188,261 + -0.9 188,261 + +0.5 188,261 + -0.1 188,261 + -0.3 188,262 - +0.1 188,335 - -1.2 188,358 + AO353_00820 0.12 -1.1 188,358 + AO353_00820 0.12 +0.6 188,358 + AO353_00820 0.12 +0.1 188,358 + AO353_00820 0.12 -2.0 188,358 + AO353_00820 0.12 -2.2 188,358 + AO353_00820 0.12 -0.9 188,358 + AO353_00820 0.12 -1.4 188,358 + AO353_00820 0.12 -1.6 188,358 + AO353_00820 0.12 -0.7 188,358 + AO353_00820 0.12 -1.0 188,359 - AO353_00820 0.12 -0.8 188,359 - AO353_00820 0.12 -1.8 188,359 - AO353_00820 0.12 -1.6 188,359 - AO353_00820 0.12 -2.1 188,489 + AO353_00820 0.29 -2.2 188,647 + AO353_00820 0.49 -1.2 188,647 + AO353_00820 0.49 +0.5 188,648 - AO353_00820 0.49 -0.3 188,682 + AO353_00820 0.54 -1.2 188,722 + AO353_00820 0.59 -1.0 188,722 + AO353_00820 0.59 -1.8 188,723 - AO353_00820 0.59 -1.9 188,765 + AO353_00820 0.64 -0.2 188,765 + AO353_00820 0.64 +0.5 188,765 + AO353_00820 0.64 -1.2 188,765 + AO353_00820 0.64 -0.6 188,765 + AO353_00820 0.64 +0.2 188,765 + AO353_00820 0.64 -0.0 188,766 - AO353_00820 0.64 -0.8 188,766 - AO353_00820 0.64 +0.1 188,766 - AO353_00820 0.64 -1.0 188,766 - AO353_00820 0.64 -1.7 188,766 - AO353_00820 0.64 -1.1 189,007 + -1.1 189,008 - +0.0 189,008 - +1.0 189,038 + -0.0 189,038 + -0.5 189,038 + -1.2 189,038 + -1.1 189,038 + -1.7 189,039 - -1.9 189,039 - -1.2 189,039 - -0.2 189,039 - -0.7 189,039 - -1.1 189,039 - +1.3 189,088 - -0.9 189,135 + -0.5 189,144 - -0.7 189,144 - -0.9 189,147 + -1.7 189,148 - -0.9 189,148 - -0.1 189,148 - -1.0 189,177 - -1.3 189,334 - AO353_00825 0.19 +0.1 189,371 + AO353_00825 0.23 -1.0 189,637 - AO353_00825 0.50 -0.3 189,681 + AO353_00825 0.55 -0.7 189,682 - AO353_00825 0.55 +0.9 189,682 - AO353_00825 0.55 -1.1 189,682 - AO353_00825 0.55 -1.5 189,790 - AO353_00825 0.66 -0.1 189,910 - AO353_00825 0.78 +0.0 189,946 - AO353_00825 0.82 -0.1
Or see this region's nucleotide sequence