Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000911

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000910 and ABIE53_000911 are separated by 92 nucleotidesABIE53_000911 and ABIE53_000912 are separated by 144 nucleotides ABIE53_000910: ABIE53_000910 - putative transport protein, at 986,442 to 988,124 _000910 ABIE53_000911: ABIE53_000911 - aspartate 4-decarboxylase, at 988,217 to 989,881 _000911 ABIE53_000912: ABIE53_000912 - alanine-glyoxylate transaminase/serine-glyoxylate transaminase/serine-pyruvate transaminase, at 990,026 to 991,249 _000912 Position (kb) 988 989 990Strain fitness (log2 ratio) -2 -1 0 1 2at 987.435 kb on + strand, within ABIE53_000910at 987.435 kb on + strand, within ABIE53_000910at 987.435 kb on + strand, within ABIE53_000910at 987.435 kb on + strand, within ABIE53_000910at 987.436 kb on - strand, within ABIE53_000910at 987.436 kb on - strand, within ABIE53_000910at 987.436 kb on - strand, within ABIE53_000910at 987.436 kb on - strand, within ABIE53_000910at 987.437 kb on + strand, within ABIE53_000910at 987.437 kb on + strand, within ABIE53_000910at 987.438 kb on - strand, within ABIE53_000910at 987.438 kb on - strand, within ABIE53_000910at 987.438 kb on - strand, within ABIE53_000910at 987.519 kb on + strand, within ABIE53_000910at 987.519 kb on + strand, within ABIE53_000910at 987.520 kb on - strand, within ABIE53_000910at 987.520 kb on - strand, within ABIE53_000910at 987.520 kb on - strand, within ABIE53_000910at 987.520 kb on - strand, within ABIE53_000910at 987.565 kb on - strand, within ABIE53_000910at 987.577 kb on - strand, within ABIE53_000910at 987.577 kb on - strand, within ABIE53_000910at 987.600 kb on + strand, within ABIE53_000910at 987.600 kb on + strand, within ABIE53_000910at 987.600 kb on + strand, within ABIE53_000910at 987.600 kb on + strand, within ABIE53_000910at 987.600 kb on + strand, within ABIE53_000910at 987.601 kb on - strand, within ABIE53_000910at 987.601 kb on - strand, within ABIE53_000910at 987.601 kb on - strand, within ABIE53_000910at 987.601 kb on - strand, within ABIE53_000910at 987.601 kb on - strand, within ABIE53_000910at 987.601 kb on - strand, within ABIE53_000910at 987.601 kb on - strand, within ABIE53_000910at 987.610 kb on + strand, within ABIE53_000910at 987.610 kb on + strand, within ABIE53_000910at 987.610 kb on + strand, within ABIE53_000910at 987.611 kb on - strand, within ABIE53_000910at 987.744 kb on + strand, within ABIE53_000910at 987.744 kb on + strand, within ABIE53_000910at 987.745 kb on - strand, within ABIE53_000910at 987.745 kb on - strand, within ABIE53_000910at 987.887 kb on - strand, within ABIE53_000910at 987.887 kb on - strand, within ABIE53_000910at 987.934 kb on - strand, within ABIE53_000910at 987.934 kb on - strand, within ABIE53_000910at 987.934 kb on - strand, within ABIE53_000910at 987.934 kb on - strand, within ABIE53_000910at 987.945 kb on + strand, within ABIE53_000910at 988.065 kb on + strandat 988.065 kb on + strandat 988.065 kb on + strandat 988.065 kb on + strandat 988.065 kb on + strandat 988.065 kb on + strandat 988.066 kb on - strandat 988.066 kb on - strandat 988.066 kb on - strandat 988.066 kb on - strandat 988.066 kb on - strandat 988.135 kb on + strandat 988.136 kb on - strandat 988.253 kb on - strandat 988.463 kb on + strand, within ABIE53_000911at 988.463 kb on + strand, within ABIE53_000911at 988.464 kb on - strand, within ABIE53_000911at 988.464 kb on - strand, within ABIE53_000911at 988.464 kb on - strand, within ABIE53_000911at 988.464 kb on - strand, within ABIE53_000911at 988.464 kb on - strand, within ABIE53_000911at 988.464 kb on - strand, within ABIE53_000911at 988.464 kb on - strand, within ABIE53_000911at 988.583 kb on + strand, within ABIE53_000911at 988.584 kb on - strand, within ABIE53_000911at 988.584 kb on - strand, within ABIE53_000911at 988.584 kb on - strand, within ABIE53_000911at 988.584 kb on - strand, within ABIE53_000911at 988.584 kb on - strand, within ABIE53_000911at 988.584 kb on - strand, within ABIE53_000911at 988.584 kb on - strand, within ABIE53_000911at 988.626 kb on - strand, within ABIE53_000911at 988.681 kb on + strand, within ABIE53_000911at 988.681 kb on + strand, within ABIE53_000911at 988.682 kb on - strand, within ABIE53_000911at 988.682 kb on - strand, within ABIE53_000911at 988.710 kb on - strand, within ABIE53_000911at 988.796 kb on + strand, within ABIE53_000911at 988.796 kb on + strand, within ABIE53_000911at 988.796 kb on + strand, within ABIE53_000911at 988.796 kb on + strand, within ABIE53_000911at 988.797 kb on - strand, within ABIE53_000911at 988.797 kb on - strand, within ABIE53_000911at 988.797 kb on - strand, within ABIE53_000911at 988.797 kb on - strand, within ABIE53_000911at 988.797 kb on - strand, within ABIE53_000911at 988.797 kb on - strand, within ABIE53_000911at 988.843 kb on + strand, within ABIE53_000911at 988.843 kb on + strand, within ABIE53_000911at 988.877 kb on + strand, within ABIE53_000911at 988.877 kb on + strand, within ABIE53_000911at 988.878 kb on - strand, within ABIE53_000911at 988.878 kb on - strand, within ABIE53_000911at 988.904 kb on + strand, within ABIE53_000911at 988.905 kb on - strand, within ABIE53_000911at 988.905 kb on - strand, within ABIE53_000911at 989.063 kb on + strand, within ABIE53_000911at 989.063 kb on + strand, within ABIE53_000911at 989.063 kb on + strand, within ABIE53_000911at 989.063 kb on + strand, within ABIE53_000911at 989.063 kb on + strand, within ABIE53_000911at 989.064 kb on - strand, within ABIE53_000911at 989.064 kb on - strand, within ABIE53_000911at 989.064 kb on - strand, within ABIE53_000911at 989.120 kb on + strand, within ABIE53_000911at 989.120 kb on + strand, within ABIE53_000911at 989.120 kb on + strand, within ABIE53_000911at 989.173 kb on + strand, within ABIE53_000911at 989.174 kb on - strand, within ABIE53_000911at 989.192 kb on + strand, within ABIE53_000911at 989.193 kb on - strand, within ABIE53_000911at 989.201 kb on + strand, within ABIE53_000911at 989.202 kb on - strand, within ABIE53_000911at 989.202 kb on - strand, within ABIE53_000911at 989.315 kb on + strand, within ABIE53_000911at 989.315 kb on + strand, within ABIE53_000911at 989.316 kb on - strand, within ABIE53_000911at 989.477 kb on + strand, within ABIE53_000911at 989.525 kb on + strand, within ABIE53_000911at 989.576 kb on + strand, within ABIE53_000911at 989.576 kb on + strand, within ABIE53_000911at 989.576 kb on + strand, within ABIE53_000911at 989.577 kb on - strand, within ABIE53_000911at 989.577 kb on - strand, within ABIE53_000911at 989.577 kb on - strand, within ABIE53_000911at 989.577 kb on - strand, within ABIE53_000911at 989.577 kb on - strand, within ABIE53_000911at 989.577 kb on - strand, within ABIE53_000911at 989.579 kb on + strand, within ABIE53_000911at 989.579 kb on + strand, within ABIE53_000911at 989.579 kb on + strand, within ABIE53_000911at 989.580 kb on - strand, within ABIE53_000911at 989.580 kb on - strand, within ABIE53_000911at 989.781 kb on - strandat 989.822 kb on + strandat 989.822 kb on + strandat 989.822 kb on + strandat 989.822 kb on + strandat 989.823 kb on - strandat 989.823 kb on - strandat 989.823 kb on - strandat 989.823 kb on - strandat 989.863 kb on + strandat 989.864 kb on - strandat 990.049 kb on + strandat 990.050 kb on - strandat 990.050 kb on - strandat 990.050 kb on - strandat 990.050 kb on - strandat 990.050 kb on - strandat 990.050 kb on - strandat 990.056 kb on - strandat 990.239 kb on + strand, within ABIE53_000912at 990.239 kb on + strand, within ABIE53_000912at 990.239 kb on + strand, within ABIE53_000912at 990.239 kb on + strand, within ABIE53_000912at 990.240 kb on - strand, within ABIE53_000912at 990.240 kb on - strand, within ABIE53_000912at 990.524 kb on - strand, within ABIE53_000912at 990.524 kb on - strand, within ABIE53_000912at 990.524 kb on - strand, within ABIE53_000912at 990.524 kb on - strand, within ABIE53_000912at 990.537 kb on - strand, within ABIE53_000912at 990.818 kb on + strand, within ABIE53_000912at 990.818 kb on + strand, within ABIE53_000912at 990.818 kb on + strand, within ABIE53_000912at 990.819 kb on - strand, within ABIE53_000912at 990.819 kb on - strand, within ABIE53_000912at 990.819 kb on - strand, within ABIE53_000912

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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987,435 + ABIE53_000910 0.59 +0.3
987,435 + ABIE53_000910 0.59 -0.7
987,435 + ABIE53_000910 0.59 -1.3
987,435 + ABIE53_000910 0.59 -0.7
987,436 - ABIE53_000910 0.59 -1.9
987,436 - ABIE53_000910 0.59 -1.0
987,436 - ABIE53_000910 0.59 +1.5
987,436 - ABIE53_000910 0.59 -0.4
987,437 + ABIE53_000910 0.59 -1.4
987,437 + ABIE53_000910 0.59 +0.2
987,438 - ABIE53_000910 0.59 -1.4
987,438 - ABIE53_000910 0.59 +1.1
987,438 - ABIE53_000910 0.59 -0.2
987,519 + ABIE53_000910 0.64 +0.6
987,519 + ABIE53_000910 0.64 -0.5
987,520 - ABIE53_000910 0.64 +0.3
987,520 - ABIE53_000910 0.64 -2.4
987,520 - ABIE53_000910 0.64 +0.3
987,520 - ABIE53_000910 0.64 +0.6
987,565 - ABIE53_000910 0.67 -0.5
987,577 - ABIE53_000910 0.67 -1.4
987,577 - ABIE53_000910 0.67 -1.9
987,600 + ABIE53_000910 0.69 +0.1
987,600 + ABIE53_000910 0.69 -0.0
987,600 + ABIE53_000910 0.69 +0.3
987,600 + ABIE53_000910 0.69 +1.2
987,600 + ABIE53_000910 0.69 -0.4
987,601 - ABIE53_000910 0.69 -0.4
987,601 - ABIE53_000910 0.69 +0.1
987,601 - ABIE53_000910 0.69 +0.3
987,601 - ABIE53_000910 0.69 +0.1
987,601 - ABIE53_000910 0.69 -1.2
987,601 - ABIE53_000910 0.69 +0.4
987,601 - ABIE53_000910 0.69 -0.4
987,610 + ABIE53_000910 0.69 -0.6
987,610 + ABIE53_000910 0.69 +1.2
987,610 + ABIE53_000910 0.69 -2.1
987,611 - ABIE53_000910 0.69 -0.9
987,744 + ABIE53_000910 0.77 -0.7
987,744 + ABIE53_000910 0.77 +1.5
987,745 - ABIE53_000910 0.77 +0.8
987,745 - ABIE53_000910 0.77 +1.1
987,887 - ABIE53_000910 0.86 +0.3
987,887 - ABIE53_000910 0.86 -2.2
987,934 - ABIE53_000910 0.89 +1.9
987,934 - ABIE53_000910 0.89 +1.6
987,934 - ABIE53_000910 0.89 +0.3
987,934 - ABIE53_000910 0.89 +0.8
987,945 + ABIE53_000910 0.89 -0.1
988,065 + -0.7
988,065 + -0.8
988,065 + +0.4
988,065 + +0.1
988,065 + -0.7
988,065 + -0.5
988,066 - -1.4
988,066 - +0.6
988,066 - +0.1
988,066 - +0.2
988,066 - +0.1
988,135 + -0.5
988,136 - +0.8
988,253 - +0.1
988,463 + ABIE53_000911 0.15 -0.6
988,463 + ABIE53_000911 0.15 +1.4
988,464 - ABIE53_000911 0.15 +0.3
988,464 - ABIE53_000911 0.15 +0.2
988,464 - ABIE53_000911 0.15 -1.7
988,464 - ABIE53_000911 0.15 +0.1
988,464 - ABIE53_000911 0.15 +0.6
988,464 - ABIE53_000911 0.15 +0.0
988,464 - ABIE53_000911 0.15 -0.2
988,583 + ABIE53_000911 0.22 +1.1
988,584 - ABIE53_000911 0.22 -1.7
988,584 - ABIE53_000911 0.22 +0.6
988,584 - ABIE53_000911 0.22 +0.2
988,584 - ABIE53_000911 0.22 +0.6
988,584 - ABIE53_000911 0.22 +0.1
988,584 - ABIE53_000911 0.22 -1.7
988,584 - ABIE53_000911 0.22 -1.2
988,626 - ABIE53_000911 0.25 -0.6
988,681 + ABIE53_000911 0.28 -1.1
988,681 + ABIE53_000911 0.28 +0.1
988,682 - ABIE53_000911 0.28 -0.1
988,682 - ABIE53_000911 0.28 -0.4
988,710 - ABIE53_000911 0.30 +0.6
988,796 + ABIE53_000911 0.35 -0.9
988,796 + ABIE53_000911 0.35 -0.4
988,796 + ABIE53_000911 0.35 +0.2
988,796 + ABIE53_000911 0.35 -0.2
988,797 - ABIE53_000911 0.35 +1.0
988,797 - ABIE53_000911 0.35 +0.1
988,797 - ABIE53_000911 0.35 -0.9
988,797 - ABIE53_000911 0.35 +0.3
988,797 - ABIE53_000911 0.35 -0.3
988,797 - ABIE53_000911 0.35 +0.1
988,843 + ABIE53_000911 0.38 -0.6
988,843 + ABIE53_000911 0.38 +0.9
988,877 + ABIE53_000911 0.40 +0.8
988,877 + ABIE53_000911 0.40 -1.4
988,878 - ABIE53_000911 0.40 +0.6
988,878 - ABIE53_000911 0.40 +1.2
988,904 + ABIE53_000911 0.41 -1.2
988,905 - ABIE53_000911 0.41 -1.1
988,905 - ABIE53_000911 0.41 -0.7
989,063 + ABIE53_000911 0.51 -0.4
989,063 + ABIE53_000911 0.51 +0.2
989,063 + ABIE53_000911 0.51 +0.1
989,063 + ABIE53_000911 0.51 +0.5
989,063 + ABIE53_000911 0.51 +0.2
989,064 - ABIE53_000911 0.51 -0.2
989,064 - ABIE53_000911 0.51 -0.7
989,064 - ABIE53_000911 0.51 -1.7
989,120 + ABIE53_000911 0.54 -0.2
989,120 + ABIE53_000911 0.54 -0.5
989,120 + ABIE53_000911 0.54 -0.5
989,173 + ABIE53_000911 0.57 -0.7
989,174 - ABIE53_000911 0.57 -1.6
989,192 + ABIE53_000911 0.59 -1.1
989,193 - ABIE53_000911 0.59 +0.3
989,201 + ABIE53_000911 0.59 +1.1
989,202 - ABIE53_000911 0.59 +0.6
989,202 - ABIE53_000911 0.59 +0.2
989,315 + ABIE53_000911 0.66 +0.2
989,315 + ABIE53_000911 0.66 +1.6
989,316 - ABIE53_000911 0.66 -0.3
989,477 + ABIE53_000911 0.76 -0.8
989,525 + ABIE53_000911 0.79 +0.9
989,576 + ABIE53_000911 0.82 -0.6
989,576 + ABIE53_000911 0.82 -0.7
989,576 + ABIE53_000911 0.82 -0.0
989,577 - ABIE53_000911 0.82 +0.1
989,577 - ABIE53_000911 0.82 -1.9
989,577 - ABIE53_000911 0.82 -0.5
989,577 - ABIE53_000911 0.82 +0.6
989,577 - ABIE53_000911 0.82 +0.2
989,577 - ABIE53_000911 0.82 +0.2
989,579 + ABIE53_000911 0.82 +1.1
989,579 + ABIE53_000911 0.82 -0.5
989,579 + ABIE53_000911 0.82 +0.8
989,580 - ABIE53_000911 0.82 -0.2
989,580 - ABIE53_000911 0.82 -1.1
989,781 - -0.7
989,822 + -2.1
989,822 + +0.1
989,822 + +0.6
989,822 + -0.1
989,823 - +0.0
989,823 - -0.4
989,823 - +1.1
989,823 - +1.2
989,863 + +0.4
989,864 - -0.3
990,049 + +0.8
990,050 - +0.3
990,050 - -0.8
990,050 - -1.8
990,050 - -0.4
990,050 - -0.6
990,050 - -0.1
990,056 - -0.7
990,239 + ABIE53_000912 0.17 -0.7
990,239 + ABIE53_000912 0.17 +0.4
990,239 + ABIE53_000912 0.17 +0.6
990,239 + ABIE53_000912 0.17 +2.2
990,240 - ABIE53_000912 0.17 -0.4
990,240 - ABIE53_000912 0.17 -0.7
990,524 - ABIE53_000912 0.41 +0.1
990,524 - ABIE53_000912 0.41 -0.9
990,524 - ABIE53_000912 0.41 -0.6
990,524 - ABIE53_000912 0.41 -0.4
990,537 - ABIE53_000912 0.42 -1.7
990,818 + ABIE53_000912 0.65 -0.2
990,818 + ABIE53_000912 0.65 -0.0
990,818 + ABIE53_000912 0.65 +0.6
990,819 - ABIE53_000912 0.65 -0.7
990,819 - ABIE53_000912 0.65 -1.4
990,819 - ABIE53_000912 0.65 +0.2

Or see this region's nucleotide sequence