Strain Fitness in Pantoea sp. MT58 around IAI47_21355

Experiment: copper (II) chloride 2 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_21350 and IAI47_21355 are separated by 542 nucleotidesIAI47_21355 and IAI47_21360 are separated by 367 nucleotidesIAI47_21360 and IAI47_21365 are separated by 175 nucleotides IAI47_21350: IAI47_21350 - EAL domain-containing protein, at 4,255 to 6,039 _21350 IAI47_21355: IAI47_21355 - DUF3606 domain-containing protein, at 6,582 to 6,782 _21355 IAI47_21360: IAI47_21360 - transcriptional regulator, at 7,150 to 7,389 _21360 IAI47_21365: IAI47_21365 - Hsp20 family protein, at 7,565 to 8,053 _21365 Position (kb) 6 7Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 5.605 kb on + strand, within IAI47_21350at 5.606 kb on - strand, within IAI47_21350at 5.673 kb on + strand, within IAI47_21350at 5.674 kb on - strand, within IAI47_21350at 5.705 kb on + strand, within IAI47_21350at 5.705 kb on + strand, within IAI47_21350at 5.706 kb on - strand, within IAI47_21350at 5.706 kb on - strand, within IAI47_21350at 5.706 kb on - strand, within IAI47_21350at 5.715 kb on + strand, within IAI47_21350at 5.716 kb on - strand, within IAI47_21350at 5.716 kb on - strand, within IAI47_21350at 5.716 kb on - strand, within IAI47_21350at 5.730 kb on + strand, within IAI47_21350at 5.763 kb on + strand, within IAI47_21350at 5.765 kb on + strand, within IAI47_21350at 5.765 kb on + strand, within IAI47_21350at 5.765 kb on + strand, within IAI47_21350at 5.765 kb on + strand, within IAI47_21350at 5.765 kb on + strand, within IAI47_21350at 5.765 kb on + strand, within IAI47_21350at 5.765 kb on + strand, within IAI47_21350at 5.765 kb on + strand, within IAI47_21350at 5.765 kb on + strand, within IAI47_21350at 5.765 kb on + strand, within IAI47_21350at 5.765 kb on + strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.766 kb on - strand, within IAI47_21350at 5.769 kb on + strand, within IAI47_21350at 5.769 kb on + strand, within IAI47_21350at 5.769 kb on + strand, within IAI47_21350at 5.769 kb on + strand, within IAI47_21350at 5.769 kb on + strand, within IAI47_21350at 5.769 kb on + strand, within IAI47_21350at 5.769 kb on + strand, within IAI47_21350at 5.769 kb on + strand, within IAI47_21350at 5.769 kb on + strand, within IAI47_21350at 5.769 kb on + strand, within IAI47_21350at 5.769 kb on + strand, within IAI47_21350at 5.769 kb on + strand, within IAI47_21350at 5.770 kb on - strand, within IAI47_21350at 5.770 kb on - strand, within IAI47_21350at 5.770 kb on - strand, within IAI47_21350at 5.770 kb on - strand, within IAI47_21350at 5.770 kb on - strand, within IAI47_21350at 5.770 kb on - strand, within IAI47_21350at 5.770 kb on - strand, within IAI47_21350at 5.770 kb on - strand, within IAI47_21350at 5.770 kb on - strand, within IAI47_21350at 5.781 kb on + strand, within IAI47_21350at 5.781 kb on + strand, within IAI47_21350at 5.782 kb on - strand, within IAI47_21350at 5.867 kb on - strandat 5.867 kb on - strandat 5.898 kb on + strandat 5.899 kb on - strandat 5.932 kb on + strandat 5.992 kb on + strandat 6.033 kb on + strandat 6.033 kb on + strandat 6.034 kb on - strandat 6.045 kb on + strandat 6.045 kb on + strandat 6.045 kb on + strandat 6.045 kb on + strandat 6.045 kb on + strandat 6.045 kb on + strandat 6.045 kb on + strandat 6.045 kb on + strandat 6.046 kb on - strandat 6.046 kb on - strandat 6.046 kb on - strandat 6.067 kb on + strandat 6.067 kb on + strandat 6.067 kb on + strandat 6.068 kb on - strandat 6.068 kb on - strandat 6.124 kb on + strandat 6.124 kb on + strandat 6.125 kb on - strandat 6.149 kb on + strandat 6.150 kb on - strandat 6.155 kb on + strandat 6.155 kb on + strandat 6.163 kb on + strandat 6.164 kb on - strandat 6.164 kb on - strandat 6.164 kb on - strandat 6.164 kb on - strandat 6.164 kb on - strandat 6.182 kb on - strandat 6.214 kb on - strandat 6.268 kb on - strandat 6.299 kb on - strandat 6.306 kb on - strandat 6.306 kb on - strandat 6.326 kb on + strandat 6.327 kb on - strandat 6.344 kb on - strandat 6.347 kb on - strandat 6.349 kb on + strandat 6.354 kb on - strandat 6.385 kb on + strandat 6.426 kb on - strandat 6.426 kb on - strandat 6.433 kb on + strandat 6.443 kb on - strandat 6.492 kb on + strandat 6.493 kb on - strandat 6.558 kb on + strandat 6.558 kb on + strandat 6.562 kb on - strandat 6.570 kb on - strandat 6.584 kb on - strandat 6.584 kb on - strandat 6.584 kb on - strandat 6.687 kb on - strand, within IAI47_21355at 6.687 kb on - strand, within IAI47_21355at 6.687 kb on - strand, within IAI47_21355at 6.687 kb on - strand, within IAI47_21355at 6.690 kb on + strand, within IAI47_21355at 6.691 kb on - strand, within IAI47_21355at 6.706 kb on + strand, within IAI47_21355at 6.784 kb on + strandat 6.784 kb on + strandat 6.784 kb on + strandat 6.784 kb on + strandat 6.785 kb on - strandat 6.785 kb on - strandat 6.822 kb on + strandat 6.822 kb on + strandat 6.823 kb on - strandat 6.823 kb on - strandat 6.823 kb on - strandat 6.834 kb on + strandat 6.834 kb on + strandat 6.834 kb on + strandat 6.834 kb on + strandat 6.834 kb on + strandat 6.835 kb on - strandat 6.835 kb on - strandat 6.842 kb on + strandat 6.842 kb on + strandat 6.843 kb on - strandat 6.843 kb on - strandat 6.843 kb on - strandat 6.843 kb on - strandat 6.863 kb on - strandat 6.871 kb on - strandat 6.878 kb on + strandat 6.878 kb on + strandat 6.897 kb on - strandat 6.897 kb on - strandat 6.897 kb on - strandat 6.905 kb on + strandat 6.913 kb on + strandat 6.914 kb on - strandat 6.914 kb on - strandat 6.942 kb on + strandat 7.011 kb on + strandat 7.012 kb on - strandat 7.012 kb on - strandat 7.012 kb on - strandat 7.032 kb on + strandat 7.049 kb on + strandat 7.050 kb on - strandat 7.050 kb on - strandat 7.191 kb on + strand, within IAI47_21360at 7.191 kb on + strand, within IAI47_21360at 7.192 kb on - strand, within IAI47_21360at 7.257 kb on + strand, within IAI47_21360at 7.258 kb on - strand, within IAI47_21360at 7.304 kb on + strand, within IAI47_21360at 7.304 kb on + strand, within IAI47_21360at 7.304 kb on + strand, within IAI47_21360at 7.304 kb on + strand, within IAI47_21360at 7.305 kb on - strand, within IAI47_21360at 7.305 kb on - strand, within IAI47_21360at 7.305 kb on - strand, within IAI47_21360at 7.305 kb on - strand, within IAI47_21360at 7.307 kb on + strand, within IAI47_21360at 7.307 kb on + strand, within IAI47_21360at 7.307 kb on + strand, within IAI47_21360at 7.308 kb on - strand, within IAI47_21360at 7.308 kb on - strand, within IAI47_21360at 7.322 kb on - strand, within IAI47_21360at 7.331 kb on + strand, within IAI47_21360at 7.331 kb on + strand, within IAI47_21360at 7.331 kb on + strand, within IAI47_21360at 7.331 kb on + strand, within IAI47_21360at 7.331 kb on + strand, within IAI47_21360at 7.331 kb on + strand, within IAI47_21360at 7.332 kb on - strand, within IAI47_21360at 7.332 kb on - strand, within IAI47_21360at 7.334 kb on + strand, within IAI47_21360at 7.334 kb on + strand, within IAI47_21360at 7.335 kb on - strand, within IAI47_21360at 7.335 kb on - strand, within IAI47_21360at 7.335 kb on - strand, within IAI47_21360at 7.335 kb on - strand, within IAI47_21360at 7.335 kb on - strand, within IAI47_21360at 7.337 kb on + strand, within IAI47_21360at 7.337 kb on + strand, within IAI47_21360at 7.338 kb on - strand, within IAI47_21360at 7.381 kb on - strandat 7.381 kb on - strandat 7.381 kb on - strandat 7.408 kb on + strandat 7.409 kb on - strandat 7.409 kb on - strandat 7.414 kb on + strandat 7.415 kb on - strandat 7.426 kb on + strandat 7.426 kb on + strandat 7.436 kb on + strandat 7.436 kb on + strandat 7.437 kb on - strandat 7.437 kb on - strandat 7.437 kb on - strandat 7.441 kb on + strandat 7.441 kb on + strandat 7.441 kb on + strandat 7.442 kb on - strandat 7.442 kb on - strandat 7.442 kb on - strandat 7.490 kb on + strandat 7.490 kb on + strandat 7.490 kb on + strandat 7.490 kb on + strandat 7.490 kb on + strandat 7.491 kb on - strandat 7.494 kb on + strandat 7.494 kb on + strandat 7.495 kb on - strandat 7.495 kb on - strandat 7.558 kb on + strandat 7.558 kb on + strandat 7.564 kb on + strandat 7.564 kb on + strandat 7.564 kb on + strandat 7.564 kb on + strandat 7.564 kb on + strandat 7.565 kb on - strandat 7.565 kb on - strandat 7.565 kb on - strandat 7.565 kb on - strandat 7.572 kb on + strandat 7.572 kb on + strandat 7.572 kb on + strandat 7.573 kb on - strandat 7.628 kb on - strand, within IAI47_21365at 7.639 kb on + strand, within IAI47_21365at 7.639 kb on + strand, within IAI47_21365at 7.639 kb on + strand, within IAI47_21365at 7.640 kb on - strand, within IAI47_21365at 7.640 kb on - strand, within IAI47_21365at 7.640 kb on - strand, within IAI47_21365at 7.640 kb on - strand, within IAI47_21365at 7.640 kb on - strand, within IAI47_21365at 7.640 kb on - strand, within IAI47_21365at 7.648 kb on + strand, within IAI47_21365at 7.648 kb on + strand, within IAI47_21365at 7.657 kb on + strand, within IAI47_21365at 7.658 kb on - strand, within IAI47_21365at 7.675 kb on - strand, within IAI47_21365at 7.691 kb on + strand, within IAI47_21365at 7.691 kb on + strand, within IAI47_21365at 7.691 kb on + strand, within IAI47_21365at 7.691 kb on + strand, within IAI47_21365at 7.692 kb on - strand, within IAI47_21365at 7.699 kb on + strand, within IAI47_21365at 7.699 kb on + strand, within IAI47_21365at 7.699 kb on + strand, within IAI47_21365at 7.699 kb on + strand, within IAI47_21365at 7.699 kb on + strand, within IAI47_21365at 7.700 kb on - strand, within IAI47_21365at 7.700 kb on - strand, within IAI47_21365at 7.700 kb on - strand, within IAI47_21365at 7.700 kb on - strand, within IAI47_21365at 7.721 kb on + strand, within IAI47_21365at 7.776 kb on + strand, within IAI47_21365at 7.776 kb on + strand, within IAI47_21365at 7.777 kb on - strand, within IAI47_21365at 7.777 kb on - strand, within IAI47_21365

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic
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5,605 + IAI47_21350 0.76 -0.6
5,606 - IAI47_21350 0.76 +4.1
5,673 + IAI47_21350 0.79 +0.3
5,674 - IAI47_21350 0.79 +0.1
5,705 + IAI47_21350 0.81 +3.3
5,705 + IAI47_21350 0.81 -1.8
5,706 - IAI47_21350 0.81 +0.7
5,706 - IAI47_21350 0.81 -0.3
5,706 - IAI47_21350 0.81 +0.2
5,715 + IAI47_21350 0.82 +0.7
5,716 - IAI47_21350 0.82 -0.2
5,716 - IAI47_21350 0.82 +0.1
5,716 - IAI47_21350 0.82 +2.5
5,730 + IAI47_21350 0.83 -0.5
5,763 + IAI47_21350 0.84 +1.4
5,765 + IAI47_21350 0.85 +1.9
5,765 + IAI47_21350 0.85 +0.6
5,765 + IAI47_21350 0.85 +1.7
5,765 + IAI47_21350 0.85 -0.5
5,765 + IAI47_21350 0.85 +0.7
5,765 + IAI47_21350 0.85 +1.6
5,765 + IAI47_21350 0.85 +1.0
5,765 + IAI47_21350 0.85 -1.5
5,765 + IAI47_21350 0.85 -0.5
5,765 + IAI47_21350 0.85 +1.2
5,765 + IAI47_21350 0.85 -2.0
5,766 - IAI47_21350 0.85 +1.0
5,766 - IAI47_21350 0.85 +0.9
5,766 - IAI47_21350 0.85 -0.1
5,766 - IAI47_21350 0.85 +0.5
5,766 - IAI47_21350 0.85 +1.2
5,766 - IAI47_21350 0.85 +0.0
5,766 - IAI47_21350 0.85 +0.2
5,766 - IAI47_21350 0.85 -0.8
5,766 - IAI47_21350 0.85 +4.5
5,766 - IAI47_21350 0.85 +0.1
5,766 - IAI47_21350 0.85 -0.3
5,766 - IAI47_21350 0.85 +1.0
5,766 - IAI47_21350 0.85 -0.3
5,766 - IAI47_21350 0.85 +2.8
5,766 - IAI47_21350 0.85 -0.5
5,766 - IAI47_21350 0.85 +2.5
5,766 - IAI47_21350 0.85 +1.0
5,769 + IAI47_21350 0.85 -0.8
5,769 + IAI47_21350 0.85 +1.0
5,769 + IAI47_21350 0.85 +0.3
5,769 + IAI47_21350 0.85 +0.5
5,769 + IAI47_21350 0.85 +3.1
5,769 + IAI47_21350 0.85 +1.4
5,769 + IAI47_21350 0.85 +0.4
5,769 + IAI47_21350 0.85 +3.9
5,769 + IAI47_21350 0.85 +0.5
5,769 + IAI47_21350 0.85 +1.0
5,769 + IAI47_21350 0.85 +0.3
5,769 + IAI47_21350 0.85 -0.6
5,770 - IAI47_21350 0.85 -0.5
5,770 - IAI47_21350 0.85 +1.8
5,770 - IAI47_21350 0.85 -0.6
5,770 - IAI47_21350 0.85 +1.3
5,770 - IAI47_21350 0.85 -0.8
5,770 - IAI47_21350 0.85 -0.9
5,770 - IAI47_21350 0.85 +1.1
5,770 - IAI47_21350 0.85 +0.8
5,770 - IAI47_21350 0.85 -1.7
5,781 + IAI47_21350 0.85 +3.1
5,781 + IAI47_21350 0.85 +1.4
5,782 - IAI47_21350 0.86 -1.2
5,867 - +2.2
5,867 - -0.5
5,898 + +0.6
5,899 - +2.1
5,932 + -1.1
5,992 + +1.7
6,033 + +0.2
6,033 + -0.9
6,034 - -0.6
6,045 + -2.3
6,045 + +1.0
6,045 + +0.4
6,045 + +3.1
6,045 + +0.2
6,045 + +1.2
6,045 + -2.0
6,045 + +3.0
6,046 - +2.3
6,046 - -1.2
6,046 - +2.1
6,067 + +1.9
6,067 + +0.7
6,067 + -0.3
6,068 - -1.2
6,068 - +0.5
6,124 + +0.7
6,124 + -0.8
6,125 - -1.4
6,149 + +3.0
6,150 - -0.0
6,155 + -1.4
6,155 + +0.2
6,163 + +1.5
6,164 - +1.8
6,164 - -1.0
6,164 - -0.1
6,164 - +1.3
6,164 - +0.5
6,182 - -0.3
6,214 - +0.3
6,268 - -0.2
6,299 - +1.0
6,306 - -0.2
6,306 - +1.1
6,326 + +1.3
6,327 - +0.5
6,344 - -0.0
6,347 - -0.8
6,349 + +0.4
6,354 - +2.0
6,385 + +0.2
6,426 - +1.5
6,426 - +2.1
6,433 + -1.2
6,443 - +0.2
6,492 + +0.4
6,493 - +1.0
6,558 + +0.5
6,558 + -0.6
6,562 - +0.5
6,570 - -2.2
6,584 - +0.2
6,584 - +0.2
6,584 - -0.9
6,687 - IAI47_21355 0.52 +1.0
6,687 - IAI47_21355 0.52 -1.9
6,687 - IAI47_21355 0.52 -2.1
6,687 - IAI47_21355 0.52 -1.2
6,690 + IAI47_21355 0.54 -0.5
6,691 - IAI47_21355 0.54 -1.1
6,706 + IAI47_21355 0.62 -1.0
6,784 + +0.6
6,784 + +0.6
6,784 + -0.5
6,784 + +0.0
6,785 - -1.5
6,785 - -0.0
6,822 + +0.5
6,822 + -0.6
6,823 - +1.8
6,823 - -2.1
6,823 - -1.5
6,834 + +1.3
6,834 + -0.2
6,834 + +0.4
6,834 + -0.5
6,834 + +0.6
6,835 - -0.2
6,835 - +3.0
6,842 + -1.9
6,842 + +0.5
6,843 - +0.5
6,843 - -1.4
6,843 - -1.5
6,843 - +5.1
6,863 - +1.7
6,871 - +0.5
6,878 + +0.2
6,878 + +2.1
6,897 - -0.0
6,897 - -0.7
6,897 - -0.5
6,905 + +0.5
6,913 + -0.9
6,914 - +0.5
6,914 - +1.0
6,942 + +1.0
7,011 + -0.8
7,012 - -0.3
7,012 - -0.0
7,012 - +1.5
7,032 + +1.0
7,049 + -0.3
7,050 - -0.3
7,050 - +4.4
7,191 + IAI47_21360 0.17 +0.5
7,191 + IAI47_21360 0.17 +0.6
7,192 - IAI47_21360 0.17 +0.0
7,257 + IAI47_21360 0.45 +1.1
7,258 - IAI47_21360 0.45 +1.0
7,304 + IAI47_21360 0.64 -1.3
7,304 + IAI47_21360 0.64 -0.8
7,304 + IAI47_21360 0.64 +1.6
7,304 + IAI47_21360 0.64 -0.0
7,305 - IAI47_21360 0.65 +2.2
7,305 - IAI47_21360 0.65 +1.8
7,305 - IAI47_21360 0.65 +1.2
7,305 - IAI47_21360 0.65 -0.3
7,307 + IAI47_21360 0.65 +0.4
7,307 + IAI47_21360 0.65 -1.0
7,307 + IAI47_21360 0.65 +1.7
7,308 - IAI47_21360 0.66 +1.8
7,308 - IAI47_21360 0.66 +1.4
7,322 - IAI47_21360 0.72 +0.7
7,331 + IAI47_21360 0.75 +1.7
7,331 + IAI47_21360 0.75 +1.1
7,331 + IAI47_21360 0.75 -0.1
7,331 + IAI47_21360 0.75 +0.2
7,331 + IAI47_21360 0.75 -0.0
7,331 + IAI47_21360 0.75 +0.1
7,332 - IAI47_21360 0.76 -1.5
7,332 - IAI47_21360 0.76 -0.1
7,334 + IAI47_21360 0.77 +1.5
7,334 + IAI47_21360 0.77 -0.6
7,335 - IAI47_21360 0.77 +1.7
7,335 - IAI47_21360 0.77 -1.2
7,335 - IAI47_21360 0.77 -0.6
7,335 - IAI47_21360 0.77 +0.2
7,335 - IAI47_21360 0.77 +1.0
7,337 + IAI47_21360 0.78 +0.9
7,337 + IAI47_21360 0.78 +1.2
7,338 - IAI47_21360 0.78 -0.9
7,381 - +1.2
7,381 - +0.7
7,381 - +3.9
7,408 + +2.0
7,409 - -0.3
7,409 - -0.5
7,414 + +1.1
7,415 - +1.0
7,426 + -0.5
7,426 + +0.4
7,436 + -2.1
7,436 + -1.4
7,437 - +0.4
7,437 - -0.2
7,437 - -0.8
7,441 + -0.6
7,441 + -0.5
7,441 + -0.9
7,442 - -0.3
7,442 - -1.0
7,442 - -0.0
7,490 + +0.5
7,490 + +0.1
7,490 + +0.0
7,490 + +0.8
7,490 + +0.4
7,491 - -2.1
7,494 + +1.0
7,494 + +3.5
7,495 - -0.2
7,495 - -1.5
7,558 + -0.4
7,558 + +1.0
7,564 + +0.7
7,564 + +1.8
7,564 + +1.8
7,564 + -0.9
7,564 + -1.5
7,565 - +1.3
7,565 - -1.4
7,565 - -1.5
7,565 - +1.5
7,572 + +0.4
7,572 + -0.1
7,572 + +4.1
7,573 - -1.5
7,628 - IAI47_21365 0.13 -0.3
7,639 + IAI47_21365 0.15 +2.5
7,639 + IAI47_21365 0.15 +0.5
7,639 + IAI47_21365 0.15 +0.1
7,640 - IAI47_21365 0.15 -1.7
7,640 - IAI47_21365 0.15 +1.5
7,640 - IAI47_21365 0.15 +2.3
7,640 - IAI47_21365 0.15 +1.1
7,640 - IAI47_21365 0.15 +1.9
7,640 - IAI47_21365 0.15 -0.4
7,648 + IAI47_21365 0.17 -0.9
7,648 + IAI47_21365 0.17 +0.2
7,657 + IAI47_21365 0.19 -0.8
7,658 - IAI47_21365 0.19 -0.1
7,675 - IAI47_21365 0.22 +0.5
7,691 + IAI47_21365 0.26 +0.5
7,691 + IAI47_21365 0.26 +1.1
7,691 + IAI47_21365 0.26 +0.6
7,691 + IAI47_21365 0.26 -0.4
7,692 - IAI47_21365 0.26 +1.5
7,699 + IAI47_21365 0.27 -0.2
7,699 + IAI47_21365 0.27 +1.3
7,699 + IAI47_21365 0.27 -0.1
7,699 + IAI47_21365 0.27 +0.8
7,699 + IAI47_21365 0.27 +0.2
7,700 - IAI47_21365 0.28 +1.3
7,700 - IAI47_21365 0.28 +2.5
7,700 - IAI47_21365 0.28 -1.0
7,700 - IAI47_21365 0.28 -1.5
7,721 + IAI47_21365 0.32 +2.1
7,776 + IAI47_21365 0.43 +0.4
7,776 + IAI47_21365 0.43 +0.2
7,777 - IAI47_21365 0.43 +0.4
7,777 - IAI47_21365 0.43 +0.3

Or see this region's nucleotide sequence