Strain Fitness in Pantoea sp. MT58 around IAI47_20705

Experiment: copper (II) chloride 2 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20695 and IAI47_20700 are separated by 9 nucleotidesIAI47_20700 and IAI47_20705 are separated by 2 nucleotidesIAI47_20705 and IAI47_20710 overlap by 17 nucleotides IAI47_20695: IAI47_20695 - HesA/MoeB/ThiF family protein, at 387,875 to 388,843 _20695 IAI47_20700: IAI47_20700 - thiazole synthase, at 388,853 to 389,608 _20700 IAI47_20705: IAI47_20705 - sulfur carrier protein ThiS, at 389,611 to 389,808 _20705 IAI47_20710: IAI47_20710 - FAD-dependent oxidoreductase, at 389,792 to 390,736 _20710 Position (kb) 389 390Strain fitness (log2 ratio) -2 -1 0 1 2 3at 388.612 kb on + strand, within IAI47_20695at 388.687 kb on - strand, within IAI47_20695at 388.697 kb on - strand, within IAI47_20695at 388.898 kb on - strandat 388.898 kb on - strandat 388.898 kb on - strandat 388.898 kb on - strandat 389.081 kb on - strand, within IAI47_20700at 389.098 kb on + strand, within IAI47_20700at 389.099 kb on - strand, within IAI47_20700at 389.131 kb on + strand, within IAI47_20700at 389.233 kb on + strand, within IAI47_20700at 389.233 kb on + strand, within IAI47_20700at 389.235 kb on + strand, within IAI47_20700at 389.236 kb on - strand, within IAI47_20700at 389.415 kb on + strand, within IAI47_20700at 389.416 kb on + strand, within IAI47_20700at 389.416 kb on + strand, within IAI47_20700at 389.416 kb on + strand, within IAI47_20700at 389.450 kb on + strand, within IAI47_20700at 389.450 kb on + strand, within IAI47_20700at 389.450 kb on + strand, within IAI47_20700at 389.500 kb on + strand, within IAI47_20700at 389.500 kb on + strand, within IAI47_20700at 389.556 kb on + strandat 389.567 kb on - strandat 389.601 kb on + strandat 389.612 kb on + strandat 389.613 kb on - strandat 389.676 kb on - strand, within IAI47_20705at 389.793 kb on + strandat 389.794 kb on - strandat 389.881 kb on - strandat 389.940 kb on + strand, within IAI47_20710at 389.940 kb on + strand, within IAI47_20710at 389.940 kb on + strand, within IAI47_20710at 389.940 kb on + strand, within IAI47_20710at 389.940 kb on + strand, within IAI47_20710at 390.006 kb on + strand, within IAI47_20710at 390.006 kb on + strand, within IAI47_20710at 390.006 kb on + strand, within IAI47_20710at 390.007 kb on - strand, within IAI47_20710at 390.007 kb on - strand, within IAI47_20710at 390.007 kb on - strand, within IAI47_20710at 390.018 kb on - strand, within IAI47_20710at 390.018 kb on - strand, within IAI47_20710at 390.018 kb on - strand, within IAI47_20710at 390.117 kb on + strand, within IAI47_20710at 390.118 kb on - strand, within IAI47_20710at 390.118 kb on - strand, within IAI47_20710at 390.201 kb on - strand, within IAI47_20710at 390.280 kb on + strand, within IAI47_20710at 390.281 kb on + strand, within IAI47_20710at 390.281 kb on + strand, within IAI47_20710at 390.282 kb on - strand, within IAI47_20710at 390.282 kb on - strand, within IAI47_20710at 390.302 kb on + strand, within IAI47_20710at 390.302 kb on + strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.363 kb on + strand, within IAI47_20710at 390.363 kb on + strand, within IAI47_20710at 390.364 kb on - strand, within IAI47_20710at 390.467 kb on - strand, within IAI47_20710at 390.494 kb on - strand, within IAI47_20710at 390.776 kb on + strandat 390.777 kb on - strandat 390.777 kb on - strandat 390.777 kb on - strandat 390.777 kb on - strandat 390.777 kb on - strandat 390.795 kb on + strandat 390.795 kb on + strandat 390.797 kb on + strandat 390.797 kb on + strandat 390.797 kb on + strandat 390.797 kb on + strandat 390.797 kb on + strandat 390.797 kb on + strandat 390.797 kb on + strandat 390.798 kb on - strandat 390.798 kb on - strandat 390.798 kb on - strandat 390.798 kb on - strandat 390.798 kb on - strandat 390.798 kb on - strandat 390.798 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic
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388,612 + IAI47_20695 0.76 +0.8
388,687 - IAI47_20695 0.84 -1.4
388,697 - IAI47_20695 0.85 +0.5
388,898 - +0.6
388,898 - -0.2
388,898 - +0.9
388,898 - +0.5
389,081 - IAI47_20700 0.30 -0.6
389,098 + IAI47_20700 0.32 +1.5
389,099 - IAI47_20700 0.33 -1.0
389,131 + IAI47_20700 0.37 +0.5
389,233 + IAI47_20700 0.50 -0.7
389,233 + IAI47_20700 0.50 -0.4
389,235 + IAI47_20700 0.51 +2.3
389,236 - IAI47_20700 0.51 -0.6
389,415 + IAI47_20700 0.74 -1.5
389,416 + IAI47_20700 0.74 +2.0
389,416 + IAI47_20700 0.74 -0.6
389,416 + IAI47_20700 0.74 +0.3
389,450 + IAI47_20700 0.79 +3.6
389,450 + IAI47_20700 0.79 -0.4
389,450 + IAI47_20700 0.79 -1.2
389,500 + IAI47_20700 0.86 +0.5
389,500 + IAI47_20700 0.86 -1.6
389,556 + +0.9
389,567 - +0.9
389,601 + -0.5
389,612 + +0.3
389,613 - +1.8
389,676 - IAI47_20705 0.33 -1.1
389,793 + +3.5
389,794 - -0.9
389,881 - +0.0
389,940 + IAI47_20710 0.16 -0.4
389,940 + IAI47_20710 0.16 -0.9
389,940 + IAI47_20710 0.16 +0.6
389,940 + IAI47_20710 0.16 -1.5
389,940 + IAI47_20710 0.16 +1.5
390,006 + IAI47_20710 0.23 +0.4
390,006 + IAI47_20710 0.23 +2.5
390,006 + IAI47_20710 0.23 +1.1
390,007 - IAI47_20710 0.23 -1.4
390,007 - IAI47_20710 0.23 -1.8
390,007 - IAI47_20710 0.23 -0.8
390,018 - IAI47_20710 0.24 -0.4
390,018 - IAI47_20710 0.24 -0.1
390,018 - IAI47_20710 0.24 +1.9
390,117 + IAI47_20710 0.34 -2.7
390,118 - IAI47_20710 0.34 +1.8
390,118 - IAI47_20710 0.34 -0.5
390,201 - IAI47_20710 0.43 -0.8
390,280 + IAI47_20710 0.52 -0.1
390,281 + IAI47_20710 0.52 -0.7
390,281 + IAI47_20710 0.52 -0.9
390,282 - IAI47_20710 0.52 +0.9
390,282 - IAI47_20710 0.52 +0.1
390,302 + IAI47_20710 0.54 -1.5
390,302 + IAI47_20710 0.54 +0.7
390,303 - IAI47_20710 0.54 +0.9
390,303 - IAI47_20710 0.54 +1.1
390,303 - IAI47_20710 0.54 -1.4
390,303 - IAI47_20710 0.54 -1.2
390,303 - IAI47_20710 0.54 -0.4
390,363 + IAI47_20710 0.60 -1.0
390,363 + IAI47_20710 0.60 +0.8
390,364 - IAI47_20710 0.61 -1.0
390,467 - IAI47_20710 0.71 +1.9
390,494 - IAI47_20710 0.74 +3.0
390,776 + +0.7
390,777 - -2.3
390,777 - +0.9
390,777 - -0.7
390,777 - -2.2
390,777 - +0.5
390,795 + -0.2
390,795 + +0.6
390,797 + +0.9
390,797 + +0.1
390,797 + -1.5
390,797 + -0.0
390,797 + +0.1
390,797 + +1.8
390,797 + -0.2
390,798 - -0.9
390,798 - -0.1
390,798 - -0.8
390,798 - -0.8
390,798 - +0.5
390,798 - -0.5
390,798 - +1.6

Or see this region's nucleotide sequence