Strain Fitness in Pantoea sp. MT58 around IAI47_17990

Experiment: copper (II) chloride 2 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 2 uM, anaerobic
3,820,451	+		IAI47_17985	0.64	-0.7
3,820,451	+		IAI47_17985	0.64	+1.5
3,820,451	+		IAI47_17985	0.64	+0.9
3,820,451	+		IAI47_17985	0.64	-1.2
3,820,451	+		IAI47_17985	0.64	-0.0
3,820,451	+		IAI47_17985	0.64	-1.5
3,820,451	+		IAI47_17985	0.64	-0.2
3,820,451	+		IAI47_17985	0.64	+1.2
3,820,451	+		IAI47_17985	0.64	+0.8
3,820,451	+		IAI47_17985	0.64	+0.1
3,820,451	+		IAI47_17985	0.64	-0.2
3,820,451	+		IAI47_17985	0.64	-0.4
3,820,451	+		IAI47_17985	0.64	-0.2
3,820,451	+		IAI47_17985	0.64	+1.4
3,820,451	+		IAI47_17985	0.64	-0.2
3,820,451	+		IAI47_17985	0.64	+0.7
3,820,451	+		IAI47_17985	0.64	+0.8
3,820,451	+		IAI47_17985	0.64	+1.2
3,820,451	+		IAI47_17985	0.64	+0.1
3,820,451	+		IAI47_17985	0.64	+0.0
3,820,451	+		IAI47_17985	0.64	+0.5
3,820,451	+		IAI47_17985	0.64	-0.7
3,820,451	+		IAI47_17985	0.64	-1.2
3,820,451	+		IAI47_17985	0.64	+0.4
3,820,451	+		IAI47_17985	0.64	-0.3
3,820,451	+		IAI47_17985	0.64	-0.5
3,820,452	-		IAI47_17985	0.64	+0.2
3,820,452	-		IAI47_17985	0.64	+0.2
3,820,452	-		IAI47_17985	0.64	-0.7
3,820,452	-		IAI47_17985	0.64	+0.6
3,820,452	-		IAI47_17985	0.64	-0.7
3,820,452	-		IAI47_17985	0.64	+0.9
3,820,452	-		IAI47_17985	0.64	-0.7
3,820,452	-		IAI47_17985	0.64	+2.4
3,820,452	-		IAI47_17985	0.64	+0.2
3,820,452	-		IAI47_17985	0.64	-0.2
3,820,452	-		IAI47_17985	0.64	+1.0
3,820,452	-		IAI47_17985	0.64	+2.9
3,820,452	-		IAI47_17985	0.64	+0.7
3,820,452	-		IAI47_17985	0.64	+0.0
3,820,452	-		IAI47_17985	0.64	-2.4
3,820,452	-		IAI47_17985	0.64	+2.3
3,820,452	-		IAI47_17985	0.64	+0.5
3,820,452	-		IAI47_17985	0.64	-0.7
3,820,452	-		IAI47_17985	0.64	-1.7
3,820,452	-		IAI47_17985	0.64	-0.4
3,820,455	+		IAI47_17985	0.64	-0.6
3,820,455	+		IAI47_17985	0.64	+0.7
3,820,455	+		IAI47_17985	0.64	+0.6
3,820,455	+		IAI47_17985	0.64	+0.2
3,820,456	-		IAI47_17985	0.64	-1.1
3,820,456	-		IAI47_17985	0.64	+0.6
3,820,456	-		IAI47_17985	0.64	-1.0
3,820,456	-		IAI47_17985	0.64	+2.6
3,820,456	-		IAI47_17985	0.64	+0.7
3,820,456	-		IAI47_17985	0.64	-1.0
3,820,456	-		IAI47_17985	0.64	-0.0
3,820,456	-		IAI47_17985	0.64	-0.8
3,820,485	+		IAI47_17985	0.65	+3.4
3,820,486	-		IAI47_17985	0.65	-0.2
3,820,511	-		IAI47_17985	0.66	-0.7
3,820,511	-		IAI47_17985	0.66	+0.8
3,820,545	+		IAI47_17985	0.68	+2.0
3,820,545	+		IAI47_17985	0.68	-1.4
3,820,545	+		IAI47_17985	0.68	-0.6
3,820,545	+		IAI47_17985	0.68	+1.5
3,820,545	+		IAI47_17985	0.68	+2.0
3,820,545	+		IAI47_17985	0.68	+0.0
3,820,545	+		IAI47_17985	0.68	-0.8
3,820,545	+		IAI47_17985	0.68	-0.3
3,820,545	+		IAI47_17985	0.68	+1.0
3,820,546	-		IAI47_17985	0.68	+1.2
3,820,546	-		IAI47_17985	0.68	-0.8
3,820,546	-		IAI47_17985	0.68	+2.0
3,820,546	-		IAI47_17985	0.68	-0.1
3,820,546	-		IAI47_17985	0.68	+1.4
3,820,560	+		IAI47_17985	0.69	+1.1
3,820,560	+		IAI47_17985	0.69	-1.1
3,820,560	+		IAI47_17985	0.69	+0.9
3,820,560	+		IAI47_17985	0.69	-0.5
3,820,560	+		IAI47_17985	0.69	+5.1
3,820,560	+		IAI47_17985	0.69	-1.0
3,820,561	-		IAI47_17985	0.69	-0.5
3,820,561	-		IAI47_17985	0.69	-1.5
3,820,561	-		IAI47_17985	0.69	+0.5
3,820,561	-		IAI47_17985	0.69	-0.1
3,820,562	+		IAI47_17985	0.69	-0.2
3,820,563	-		IAI47_17985	0.69	-0.0
3,820,563	-		IAI47_17985	0.69	+1.2
3,820,597	+		IAI47_17985	0.70	+0.0
3,820,598	-		IAI47_17985	0.71	+1.2
3,820,601	+		IAI47_17985	0.71	-0.7
3,820,601	+		IAI47_17985	0.71	-0.6
3,820,601	+		IAI47_17985	0.71	-0.4
3,820,601	+		IAI47_17985	0.71	-0.8
3,820,602	-		IAI47_17985	0.71	-0.4
3,820,602	-		IAI47_17985	0.71	+0.0
3,820,602	-		IAI47_17985	0.71	+0.8
3,820,602	-		IAI47_17985	0.71	+0.0
3,820,602	-		IAI47_17985	0.71	-1.1
3,820,602	-		IAI47_17985	0.71	+2.1
3,820,602	-		IAI47_17985	0.71	+2.3
3,820,617	+		IAI47_17985	0.71	+1.1
3,820,617	+		IAI47_17985	0.71	+4.4
3,820,617	+		IAI47_17985	0.71	-0.3
3,820,618	-		IAI47_17985	0.71	+1.0
3,820,635	+		IAI47_17985	0.72	+0.2
3,820,635	+		IAI47_17985	0.72	+1.9
3,820,635	+		IAI47_17985	0.72	+0.4
3,820,635	+		IAI47_17985	0.72	+0.9
3,820,635	+		IAI47_17985	0.72	-1.0
3,820,636	-		IAI47_17985	0.72	+0.0
3,820,636	-		IAI47_17985	0.72	-1.2
3,820,659	+		IAI47_17985	0.73	+0.2
3,820,659	+		IAI47_17985	0.73	+1.2
3,820,659	+		IAI47_17985	0.73	-0.7
3,820,659	+		IAI47_17985	0.73	-0.3
3,820,659	+		IAI47_17985	0.73	+3.2
3,820,659	+		IAI47_17985	0.73	-1.0
3,820,659	+		IAI47_17985	0.73	+6.1
3,820,659	+		IAI47_17985	0.73	-2.0
3,820,659	+		IAI47_17985	0.73	+0.7
3,820,659	+		IAI47_17985	0.73	-0.2
3,820,659	+		IAI47_17985	0.73	-1.0
3,820,659	+		IAI47_17985	0.73	+2.2
3,820,659	+		IAI47_17985	0.73	+1.2
3,820,659	+		IAI47_17985	0.73	-1.2
3,820,660	-		IAI47_17985	0.74	-2.0
3,820,660	-		IAI47_17985	0.74	-0.1
3,820,660	-		IAI47_17985	0.74	-0.1
3,820,660	-		IAI47_17985	0.74	-0.9
3,820,660	-		IAI47_17985	0.74	+0.9
3,820,660	-		IAI47_17985	0.74	+2.7
3,820,660	-		IAI47_17985	0.74	-0.7
3,820,660	-		IAI47_17985	0.74	+0.6
3,820,660	-		IAI47_17985	0.74	+0.9
3,820,660	-		IAI47_17985	0.74	-0.4
3,820,660	-		IAI47_17985	0.74	+1.2
3,820,660	-		IAI47_17985	0.74	+0.8
3,820,661	+		IAI47_17985	0.74	-0.2
3,820,661	+		IAI47_17985	0.74	+0.8
3,820,661	+		IAI47_17985	0.74	-0.0
3,820,661	+		IAI47_17985	0.74	+1.3
3,820,662	-		IAI47_17985	0.74	+1.8
3,820,662	-		IAI47_17985	0.74	-0.2
3,820,676	+		IAI47_17985	0.74	+0.9
3,820,686	+		IAI47_17985	0.75	-1.5
3,820,686	+		IAI47_17985	0.75	+0.4
3,820,686	+		IAI47_17985	0.75	+1.8
3,820,686	+		IAI47_17985	0.75	-0.1
3,820,687	-		IAI47_17985	0.75	-0.0
3,820,687	-		IAI47_17985	0.75	+0.9
3,820,687	-		IAI47_17985	0.75	-0.4
3,820,687	-		IAI47_17985	0.75	-0.5
3,820,707	+		IAI47_17985	0.76	+1.4
3,820,722	+		IAI47_17985	0.76	-0.9
3,820,722	+		IAI47_17985	0.76	+1.1
3,820,722	+		IAI47_17985	0.76	-0.3
3,820,723	-		IAI47_17985	0.77	-0.6
3,820,749	+		IAI47_17985	0.78	-1.0
3,820,749	+		IAI47_17985	0.78	+2.1
3,820,749	+		IAI47_17985	0.78	+6.4
3,820,750	-		IAI47_17985	0.78	-0.6
3,820,750	-		IAI47_17985	0.78	-1.1
3,820,794	+		IAI47_17985	0.80	+0.5
3,820,794	+		IAI47_17985	0.80	-1.2
3,820,794	+		IAI47_17985	0.80	+0.2
3,820,794	+		IAI47_17985	0.80	+0.5
3,820,795	-		IAI47_17985	0.80	+0.1
3,820,795	-		IAI47_17985	0.80	+0.5
3,820,795	-		IAI47_17985	0.80	-0.4
3,820,795	-		IAI47_17985	0.80	+1.0
3,820,795	-		IAI47_17985	0.80	+3.1
3,820,795	-		IAI47_17985	0.80	-0.5
3,820,795	-		IAI47_17985	0.80	-1.0
3,820,795	-		IAI47_17985	0.80	+0.3
3,820,795	-		IAI47_17985	0.80	-0.2
3,820,820	+		IAI47_17985	0.81	+1.7
3,820,820	+		IAI47_17985	0.81	+0.4
3,820,820	+		IAI47_17985	0.81	-0.0
3,820,820	+		IAI47_17985	0.81	+0.4
3,820,820	+		IAI47_17985	0.81	-0.4
3,820,820	+		IAI47_17985	0.81	+0.7
3,820,820	+		IAI47_17985	0.81	-0.2
3,820,820	+		IAI47_17985	0.81	-0.9
3,820,821	-		IAI47_17985	0.81	+2.5
3,820,821	-		IAI47_17985	0.81	+0.0
3,820,821	-		IAI47_17985	0.81	+0.3
3,820,821	-		IAI47_17985	0.81	-0.0
3,820,821	-		IAI47_17985	0.81	+3.0
3,820,821	-		IAI47_17985	0.81	+1.2
3,820,821	-		IAI47_17985	0.81	+0.6
3,820,821	-		IAI47_17985	0.81	+0.4
3,820,821	-		IAI47_17985	0.81	+1.1
3,820,821	-		IAI47_17985	0.81	-1.4
3,820,821	-		IAI47_17985	0.81	-2.1
3,820,832	+		IAI47_17985	0.82	-1.7
3,820,840	-		IAI47_17985	0.82	-2.4
3,820,840	-		IAI47_17985	0.82	-0.4
3,820,840	-		IAI47_17985	0.82	+0.3
3,820,842	-		IAI47_17985	0.82	-0.7
3,820,842	-		IAI47_17985	0.82	-1.4
3,820,897	+		IAI47_17985	0.85	+0.2
3,820,897	+		IAI47_17985	0.85	+1.1
3,820,897	+		IAI47_17985	0.85	+0.1
3,820,898	-		IAI47_17985	0.85	+2.0
3,820,898	-		IAI47_17985	0.85	+0.6
3,820,898	-		IAI47_17985	0.85	-0.7
3,820,898	-		IAI47_17985	0.85	+0.3
3,820,923	+		IAI47_17985	0.86	+1.0
3,820,923	+		IAI47_17985	0.86	-0.7
3,820,924	-		IAI47_17985	0.86	+0.4
3,820,938	-		IAI47_17985	0.87	-0.2
3,820,938	-		IAI47_17985	0.87	+1.4
3,820,995	+		IAI47_17985	0.90	+0.7
3,820,995	+		IAI47_17985	0.90	+0.1
3,820,996	-		IAI47_17985	0.90	-0.1
3,820,996	-		IAI47_17985	0.90	-0.1
3,821,029	-				+1.2
3,821,058	+				+0.8
3,821,058	+				-1.4
3,821,058	+				-2.0
3,821,058	+				+0.9
3,821,058	+				+1.2
3,821,058	+				-0.4
3,821,058	+				-1.5
3,821,058	+				-0.2
3,821,058	+				+1.2
3,821,058	+				+0.9
3,821,058	+				-0.6
3,821,059	-				+1.1
3,821,059	-				-0.8
3,821,059	-				+0.5
3,821,059	-				+1.2
3,821,059	-				+0.4
3,821,059	-				+3.9
3,821,059	-				-0.1
3,821,059	-				+0.2
3,821,059	-				+0.0
3,821,059	-				+3.4
3,821,059	-				+3.3
3,821,059	-				+0.1
3,821,060	+				+2.5
3,821,060	+				-0.5
3,821,060	+				-0.0
3,821,060	+				-0.6
3,821,060	+				-1.8
3,821,061	-				+0.7
3,821,061	-				+2.6
3,821,061	-				-0.2
3,821,162	+				-1.0
3,821,162	+				-0.8
3,821,163	-				+5.5
3,821,163	-				-0.3
3,821,163	-				-0.8
3,821,163	-				-0.0
3,821,166	+				-0.1
3,821,166	+				+0.8
3,821,167	-				-1.9
3,821,167	-				-0.2
3,821,175	+				+0.7
3,821,175	+				+1.9
3,821,175	+				+1.8
3,821,175	+				+1.3
3,821,175	+				+1.9
3,821,175	+				+0.5
3,821,176	-				+0.2
3,821,176	-				-0.5
3,821,208	-				+2.0
3,821,211	+				+3.6
3,821,211	+				+0.0
3,821,211	+				+0.3
3,821,211	+				+1.1
3,821,211	+				+1.5
3,821,211	+				+1.3
3,821,211	+				+2.1
3,821,211	+				-0.6
3,821,212	-				+0.8
3,821,212	-				+1.8
3,821,247	+				+2.8
3,821,247	+				+3.5
3,821,248	-				-1.3
3,821,248	-				-0.4
3,821,248	-				-1.3
3,821,352	+				+0.5
3,821,449	-				+0.1
3,821,449	-				-1.5
3,821,449	-				+1.1
3,821,452	+				-0.0
3,821,453	-				+0.8
3,821,465	-				+0.6
3,821,527	+				-2.3
3,821,569	+				+0.8
3,821,569	+				+0.5
3,821,570	-				-1.0
3,821,629	+				-1.4
3,821,629	+				-0.3
3,821,629	+				-0.1
3,821,630	-				+1.8
3,821,630	-				+0.9
3,821,630	-				+3.9
3,821,684	+				-0.3
3,821,684	+				+2.0
3,821,684	+				-0.4
3,821,685	-				-0.8
3,821,685	-				+0.3
3,821,685	-				-1.1
3,821,685	-				+0.1
3,821,685	-				+0.4
3,821,736	+				+0.3
3,821,736	+				+0.1
3,821,737	-				-1.0
3,821,737	-				+0.6
3,821,737	-				-1.4
3,821,810	+				-2.1
3,821,810	+				-1.8
3,821,810	+				-1.5
3,821,811	-				+0.4
3,821,811	-				+1.9
3,821,831	-		IAI47_17990	0.10	-1.3
3,821,887	+		IAI47_17990	0.12	+0.3
3,821,887	+		IAI47_17990	0.12	+1.2
3,821,908	+		IAI47_17990	0.12	-0.2
3,821,908	+		IAI47_17990	0.12	-1.3
3,821,908	+		IAI47_17990	0.12	-0.2
3,821,909	-		IAI47_17990	0.12	+1.0
3,821,909	-		IAI47_17990	0.12	-0.2
3,821,909	-		IAI47_17990	0.12	+0.1
3,821,909	-		IAI47_17990	0.12	+1.0
3,821,909	-		IAI47_17990	0.12	+1.6
3,821,965	+		IAI47_17990	0.14	+1.2
3,821,966	-		IAI47_17990	0.14	-1.5
3,821,966	-		IAI47_17990	0.14	+1.6
3,822,013	+		IAI47_17990	0.15	-1.4
3,822,013	+		IAI47_17990	0.15	+1.5
3,822,018	-		IAI47_17990	0.15	-0.6
3,822,018	-		IAI47_17990	0.15	-0.1
3,822,049	-		IAI47_17990	0.16	-0.1
3,822,094	+		IAI47_17990	0.17	-0.8
3,822,104	+		IAI47_17990	0.18	+0.6
3,822,104	+		IAI47_17990	0.18	-0.1
3,822,104	+		IAI47_17990	0.18	+1.2
3,822,104	+		IAI47_17990	0.18	-0.6
3,822,104	+		IAI47_17990	0.18	+1.0
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3,824,601	-		IAI47_17990	0.86	+2.5
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3,824,647	+		IAI47_17990	0.87	+0.3
3,824,647	+		IAI47_17990	0.87	+0.8
3,824,655	+		IAI47_17990	0.87	-1.2
3,824,666	+		IAI47_17990	0.87	+0.6
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3,824,752	+		IAI47_17990	0.90	-1.6
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3,824,753	-		IAI47_17990	0.90	+1.5
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3,824,821	+				-1.7
3,824,822	-				-0.9
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3,824,822	-				-1.5
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3,826,016	+		IAI47_17995	0.83	+0.8
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3,826,017	-		IAI47_17995	0.83	-0.2
3,826,017	-		IAI47_17995	0.83	-2.1
3,826,017	-		IAI47_17995	0.83	-1.6
3,826,099	-				-1.6