Strain Fitness in Pantoea sp. MT58 around IAI47_15070

Experiment: copper (II) chloride 2 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 2 uM, anaerobic
3,177,249	+				+1.1
3,177,250	-				+0.0
3,177,250	-				+2.0
3,177,250	-				+0.1
3,177,292	+		IAI47_15065	0.13	-1.4
3,177,292	+		IAI47_15065	0.13	-1.2
3,177,318	+		IAI47_15065	0.15	+0.9
3,177,370	+		IAI47_15065	0.21	+1.0
3,177,370	+		IAI47_15065	0.21	-1.3
3,177,380	-		IAI47_15065	0.22	-1.1
3,177,433	-		IAI47_15065	0.27	-0.3
3,177,448	+		IAI47_15065	0.29	-0.3
3,177,470	+		IAI47_15065	0.31	+0.2
3,177,470	+		IAI47_15065	0.31	+1.1
3,177,470	+		IAI47_15065	0.31	+0.6
3,177,470	+		IAI47_15065	0.31	+1.7
3,177,470	+		IAI47_15065	0.31	+0.7
3,177,471	-		IAI47_15065	0.31	+1.2
3,177,544	+		IAI47_15065	0.39	-0.5
3,177,545	-		IAI47_15065	0.39	-0.1
3,177,577	+		IAI47_15065	0.42	+5.4
3,177,577	+		IAI47_15065	0.42	-0.3
3,177,577	+		IAI47_15065	0.42	+0.2
3,177,577	+		IAI47_15065	0.42	-1.5
3,177,578	-		IAI47_15065	0.42	+0.2
3,177,653	+		IAI47_15065	0.50	+0.5
3,177,653	+		IAI47_15065	0.50	+0.8
3,177,653	+		IAI47_15065	0.50	+2.3
3,177,654	-		IAI47_15065	0.50	+0.1
3,177,716	+		IAI47_15065	0.57	+3.6
3,177,716	+		IAI47_15065	0.57	+2.0
3,177,717	-		IAI47_15065	0.57	+1.5
3,177,817	+		IAI47_15065	0.67	-2.1
3,177,855	+		IAI47_15065	0.71	+0.2
3,177,855	+		IAI47_15065	0.71	+3.7
3,177,855	+		IAI47_15065	0.71	+5.4
3,177,855	+		IAI47_15065	0.71	-0.4
3,177,855	+		IAI47_15065	0.71	-0.6
3,177,856	-		IAI47_15065	0.71	-2.1
3,177,909	+		IAI47_15065	0.77	-0.2
3,177,910	-		IAI47_15065	0.77	+0.4
3,177,910	-		IAI47_15065	0.77	-0.8
3,177,946	+		IAI47_15065	0.81	+0.9
3,177,947	-		IAI47_15065	0.81	+1.0
3,178,045	+				+1.1
3,178,045	+				+0.1
3,178,064	+				-2.6
3,178,064	+				-0.6
3,178,064	+				+0.9
3,178,064	+				+1.1
3,178,065	-				+3.5
3,178,065	-				-0.6
3,178,065	-				+1.0
3,178,065	-				+1.5
3,178,065	-				-0.6
3,178,065	-				+2.1
3,178,065	-				+0.4
3,178,131	-				+0.6
3,178,169	+				+2.7
3,178,169	+				+0.5
3,178,170	-				+3.0
3,178,213	+				-0.6
3,178,213	+				+0.0
3,178,213	+				-0.2
3,178,213	+				+1.3
3,178,213	+				+1.1
3,178,214	-				-1.3
3,178,230	+		IAI47_15070	0.11	-0.8
3,178,230	+		IAI47_15070	0.11	-0.7
3,178,231	-		IAI47_15070	0.11	+1.2
3,178,231	-		IAI47_15070	0.11	+0.6
3,178,231	-		IAI47_15070	0.11	+1.3
3,178,237	+		IAI47_15070	0.15	-2.6
3,178,237	+		IAI47_15070	0.15	-0.7
3,178,238	-		IAI47_15070	0.16	+2.9
3,178,238	-		IAI47_15070	0.16	+0.0
3,178,272	+		IAI47_15070	0.39	+0.4
3,178,273	-		IAI47_15070	0.39	-0.9
3,178,320	+		IAI47_15070	0.71	+0.6
3,178,321	-		IAI47_15070	0.71	+2.9
3,178,321	-		IAI47_15070	0.71	-0.5
3,178,338	+		IAI47_15070	0.83	-0.9
3,178,346	+		IAI47_15070	0.88	-0.1
3,178,347	-		IAI47_15070	0.89	+0.6
3,178,347	-		IAI47_15070	0.89	-1.6
3,178,354	-				-1.1
3,178,354	-				+0.7
3,178,476	+				+1.3
3,178,477	-				+0.3
3,178,477	-				-0.6
3,178,477	-				-0.7
3,178,480	+				+0.6
3,178,481	-				+0.5
3,178,497	+				+1.1
3,178,498	-				+0.8
3,178,512	-				-2.4
3,178,517	+				-0.2
3,178,517	+				-0.5
3,178,517	+				+0.1
3,178,517	+				+0.8
3,178,517	+				+0.6
3,178,517	+				+0.5
3,178,518	-				+0.3
3,178,518	-				+1.6
3,178,535	+				+2.7
3,178,541	+				-0.7
3,178,541	+				+1.2
3,178,541	+				-0.5
3,178,541	+				-1.0
3,178,542	-				+1.9
3,178,600	+				+0.4
3,178,600	+				+1.1
3,178,601	-				+0.0
3,178,601	-				+1.3
3,178,627	+				-1.6
3,178,630	+				+2.2
3,178,639	+				+0.2
3,178,639	+				+0.1
3,178,642	+				+0.6
3,178,642	+				-1.3
3,178,642	+				-1.9
3,178,642	+				-0.6
3,178,642	+				+1.1
3,178,643	-				-0.9
3,178,643	-				+0.7
3,178,648	-				-1.9
3,178,680	+				-1.3
3,178,680	+				+1.3
3,178,680	+				+2.5
3,178,681	-				-0.8
3,178,681	-				+3.7
3,178,681	-				+0.2
3,178,719	+				+1.4
3,178,719	+				+1.7
3,178,730	+				-0.8
3,178,730	+				+1.1
3,178,736	+				+0.1
3,178,736	+				+1.5
3,178,737	-				-0.1
3,178,737	-				+1.0
3,178,737	-				+0.3
3,178,755	+				-0.7
3,178,755	+				-0.5
3,178,755	+				-1.5
3,178,755	+				+1.9
3,178,755	+				-0.2
3,178,755	+				-0.9
3,178,755	+				+1.6
3,178,756	-				-0.2
3,178,756	-				-0.1
3,178,756	-				+2.0
3,178,756	-				+0.5
3,178,756	-				+1.5
3,178,756	-				+1.2
3,178,756	-				+1.0
3,178,758	+				+0.7
3,178,767	+				+1.4
3,178,767	+				-0.0
3,178,767	+				-0.5
3,178,767	+				+0.6
3,178,768	-				-2.4
3,178,768	-				-1.1
3,178,768	-				-0.9
3,178,768	-				-1.7
3,178,773	+				+0.1
3,178,773	+				+0.1
3,178,773	+				+0.7
3,178,773	+				-1.0
3,178,774	-				-0.7
3,178,774	-				+0.3
3,178,775	+				+1.5
3,178,779	+				-0.7
3,178,810	+				-0.1
3,178,810	+				+0.5
3,178,810	+				+1.1
3,178,811	-				+0.2
3,178,811	-				+1.4
3,178,811	-				-1.1
3,178,811	-				-1.0
3,178,820	+				-1.0
3,178,820	+				-0.2
3,178,821	-		IAI47_15075	0.10	-1.0
3,178,867	+		IAI47_15075	0.13	-0.7
3,178,868	-		IAI47_15075	0.13	-0.1
3,178,868	-		IAI47_15075	0.13	-0.8
3,178,950	+		IAI47_15075	0.18	+0.5
3,178,950	+		IAI47_15075	0.18	+0.8
3,178,950	+		IAI47_15075	0.18	+0.5
3,178,951	-		IAI47_15075	0.18	-0.7
3,178,951	-		IAI47_15075	0.18	-0.5
3,178,951	-		IAI47_15075	0.18	+1.0
3,178,951	-		IAI47_15075	0.18	+0.9
3,178,951	-		IAI47_15075	0.18	-0.1
3,179,002	-		IAI47_15075	0.21	-0.5
3,179,063	+		IAI47_15075	0.25	+3.0
3,179,063	+		IAI47_15075	0.25	-1.2
3,179,064	-		IAI47_15075	0.25	+0.9
3,179,068	-		IAI47_15075	0.26	+5.5
3,179,076	-		IAI47_15075	0.26	+0.6
3,179,076	-		IAI47_15075	0.26	+0.0
3,179,107	+		IAI47_15075	0.28	+0.1
3,179,107	+		IAI47_15075	0.28	-0.5
3,179,107	+		IAI47_15075	0.28	+0.7
3,179,107	+		IAI47_15075	0.28	-0.3
3,179,107	+		IAI47_15075	0.28	-0.4
3,179,107	+		IAI47_15075	0.28	+1.4
3,179,107	+		IAI47_15075	0.28	+0.8
3,179,107	+		IAI47_15075	0.28	+0.5
3,179,107	+		IAI47_15075	0.28	+1.6
3,179,107	+		IAI47_15075	0.28	+0.4
3,179,107	+		IAI47_15075	0.28	-0.2
3,179,107	+		IAI47_15075	0.28	-0.2
3,179,107	+		IAI47_15075	0.28	+0.7
3,179,107	+		IAI47_15075	0.28	-0.0
3,179,107	+		IAI47_15075	0.28	-0.3
3,179,107	+		IAI47_15075	0.28	-1.8
3,179,107	+		IAI47_15075	0.28	-0.6
3,179,107	+		IAI47_15075	0.28	+0.4
3,179,108	-		IAI47_15075	0.28	-0.9
3,179,108	-		IAI47_15075	0.28	-1.0
3,179,108	-		IAI47_15075	0.28	-0.4
3,179,108	-		IAI47_15075	0.28	+0.5
3,179,108	-		IAI47_15075	0.28	+1.2
3,179,108	-		IAI47_15075	0.28	+1.8
3,179,108	-		IAI47_15075	0.28	+0.2
3,179,108	-		IAI47_15075	0.28	-0.8
3,179,108	-		IAI47_15075	0.28	+1.0
3,179,108	-		IAI47_15075	0.28	-2.8
3,179,108	-		IAI47_15075	0.28	-2.4
3,179,108	-		IAI47_15075	0.28	+1.1
3,179,108	-		IAI47_15075	0.28	+0.0
3,179,108	-		IAI47_15075	0.28	+1.3
3,179,208	+		IAI47_15075	0.35	-1.1
3,179,208	+		IAI47_15075	0.35	+0.8
3,179,208	+		IAI47_15075	0.35	+3.1
3,179,208	+		IAI47_15075	0.35	+1.2
3,179,208	+		IAI47_15075	0.35	+1.3
3,179,208	+		IAI47_15075	0.35	-1.8
3,179,209	-		IAI47_15075	0.35	-0.0
3,179,209	-		IAI47_15075	0.35	+2.2
3,179,232	+		IAI47_15075	0.36	+0.4
3,179,232	+		IAI47_15075	0.36	+2.9
3,179,232	+		IAI47_15075	0.36	-0.1
3,179,232	+		IAI47_15075	0.36	+0.0
3,179,233	-		IAI47_15075	0.36	+0.4
3,179,277	+		IAI47_15075	0.39	+0.8
3,179,277	+				+2.3
3,179,277	+		IAI47_15075	0.39	+4.4
3,179,277	+		IAI47_15075	0.39	+0.7
3,179,277	+		IAI47_15075	0.39	-0.2
3,179,278	-		IAI47_15075	0.39	+0.5
3,179,278	-		IAI47_15075	0.39	-0.3
3,179,278	-		IAI47_15075	0.39	-1.6
3,179,278	-		IAI47_15075	0.39	-0.9
3,179,291	-		IAI47_15075	0.40	+0.5