Strain Fitness in Pantoea sp. MT58 around IAI47_15060

Experiment: copper (II) chloride 2 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_15055 and IAI47_15060 are separated by 36 nucleotidesIAI47_15060 and IAI47_15065 are separated by 167 nucleotides IAI47_15055: IAI47_15055 - ATP-dependent RNA helicase DbpA, at 3,175,191 to 3,176,573 _15055 IAI47_15060: IAI47_15060 - NirD/YgiW/YdeI family stress tolerance protein, at 3,176,610 to 3,177,002 _15060 IAI47_15065: IAI47_15065 - chemotaxis protein CheV, at 3,177,170 to 3,178,132 _15065 Position (kb) 3176 3177 3178Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3175.642 kb on + strand, within IAI47_15055at 3175.697 kb on + strand, within IAI47_15055at 3175.697 kb on + strand, within IAI47_15055at 3175.697 kb on + strand, within IAI47_15055at 3175.698 kb on - strand, within IAI47_15055at 3175.698 kb on - strand, within IAI47_15055at 3175.698 kb on - strand, within IAI47_15055at 3175.698 kb on - strand, within IAI47_15055at 3175.807 kb on + strand, within IAI47_15055at 3175.807 kb on + strand, within IAI47_15055at 3175.985 kb on + strand, within IAI47_15055at 3175.985 kb on + strand, within IAI47_15055at 3175.986 kb on - strand, within IAI47_15055at 3176.071 kb on + strand, within IAI47_15055at 3176.072 kb on - strand, within IAI47_15055at 3176.072 kb on - strand, within IAI47_15055at 3176.136 kb on + strand, within IAI47_15055at 3176.136 kb on + strand, within IAI47_15055at 3176.136 kb on + strand, within IAI47_15055at 3176.136 kb on + strand, within IAI47_15055at 3176.319 kb on - strand, within IAI47_15055at 3176.319 kb on - strand, within IAI47_15055at 3176.319 kb on - strand, within IAI47_15055at 3176.319 kb on - strand, within IAI47_15055at 3176.354 kb on + strand, within IAI47_15055at 3176.354 kb on + strand, within IAI47_15055at 3176.354 kb on + strand, within IAI47_15055at 3176.354 kb on + strand, within IAI47_15055at 3176.354 kb on + strand, within IAI47_15055at 3176.354 kb on + strand, within IAI47_15055at 3176.354 kb on + strand, within IAI47_15055at 3176.354 kb on + strand, within IAI47_15055at 3176.354 kb on + strand, within IAI47_15055at 3176.354 kb on + strand, within IAI47_15055at 3176.354 kb on + strand, within IAI47_15055at 3176.354 kb on + strand, within IAI47_15055at 3176.355 kb on - strand, within IAI47_15055at 3176.355 kb on - strand, within IAI47_15055at 3176.369 kb on + strand, within IAI47_15055at 3176.472 kb on + strandat 3176.472 kb on + strandat 3176.473 kb on - strandat 3176.473 kb on - strandat 3176.473 kb on - strandat 3176.473 kb on - strandat 3176.498 kb on + strandat 3176.575 kb on + strandat 3176.575 kb on + strandat 3176.576 kb on - strandat 3176.591 kb on + strandat 3176.591 kb on + strandat 3176.592 kb on - strandat 3176.592 kb on - strandat 3176.592 kb on - strandat 3176.594 kb on + strandat 3176.594 kb on + strandat 3176.594 kb on + strandat 3176.594 kb on + strandat 3176.594 kb on + strandat 3176.594 kb on + strandat 3176.594 kb on + strandat 3176.595 kb on - strandat 3176.595 kb on - strandat 3176.595 kb on - strandat 3176.595 kb on - strandat 3176.595 kb on - strandat 3176.595 kb on - strandat 3176.611 kb on + strandat 3176.612 kb on - strandat 3176.612 kb on - strandat 3176.612 kb on - strandat 3176.612 kb on - strandat 3176.648 kb on + strandat 3176.649 kb on - strandat 3176.649 kb on - strandat 3176.649 kb on - strandat 3176.649 kb on - strandat 3176.664 kb on + strand, within IAI47_15060at 3176.664 kb on + strand, within IAI47_15060at 3176.665 kb on - strand, within IAI47_15060at 3176.669 kb on + strand, within IAI47_15060at 3176.669 kb on + strand, within IAI47_15060at 3176.670 kb on - strand, within IAI47_15060at 3176.670 kb on - strand, within IAI47_15060at 3176.682 kb on + strand, within IAI47_15060at 3176.682 kb on + strand, within IAI47_15060at 3176.682 kb on + strand, within IAI47_15060at 3176.682 kb on + strand, within IAI47_15060at 3176.683 kb on - strand, within IAI47_15060at 3176.683 kb on - strand, within IAI47_15060at 3176.683 kb on - strand, within IAI47_15060at 3176.683 kb on - strand, within IAI47_15060at 3176.683 kb on - strand, within IAI47_15060at 3176.683 kb on - strand, within IAI47_15060at 3176.701 kb on + strand, within IAI47_15060at 3176.701 kb on + strand, within IAI47_15060at 3176.702 kb on - strand, within IAI47_15060at 3176.708 kb on + strand, within IAI47_15060at 3176.709 kb on - strand, within IAI47_15060at 3176.747 kb on + strand, within IAI47_15060at 3176.748 kb on - strand, within IAI47_15060at 3176.771 kb on - strand, within IAI47_15060at 3176.771 kb on - strand, within IAI47_15060at 3176.801 kb on - strand, within IAI47_15060at 3176.801 kb on - strand, within IAI47_15060at 3176.801 kb on - strand, within IAI47_15060at 3176.818 kb on + strand, within IAI47_15060at 3176.818 kb on + strand, within IAI47_15060at 3176.852 kb on + strand, within IAI47_15060at 3176.852 kb on + strand, within IAI47_15060at 3176.852 kb on + strand, within IAI47_15060at 3176.852 kb on + strand, within IAI47_15060at 3176.852 kb on + strand, within IAI47_15060at 3176.852 kb on + strand, within IAI47_15060at 3176.852 kb on + strand, within IAI47_15060at 3176.852 kb on + strand, within IAI47_15060at 3176.852 kb on + strand, within IAI47_15060at 3176.852 kb on + strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.853 kb on - strand, within IAI47_15060at 3176.882 kb on + strand, within IAI47_15060at 3176.883 kb on - strand, within IAI47_15060at 3176.883 kb on - strand, within IAI47_15060at 3176.884 kb on + strand, within IAI47_15060at 3176.885 kb on - strand, within IAI47_15060at 3176.885 kb on - strand, within IAI47_15060at 3176.885 kb on - strand, within IAI47_15060at 3176.932 kb on + strand, within IAI47_15060at 3176.933 kb on - strand, within IAI47_15060at 3176.933 kb on - strand, within IAI47_15060at 3176.985 kb on + strandat 3177.015 kb on + strandat 3177.049 kb on + strandat 3177.063 kb on + strandat 3177.063 kb on + strandat 3177.064 kb on - strandat 3177.064 kb on - strandat 3177.064 kb on - strandat 3177.079 kb on + strandat 3177.137 kb on + strandat 3177.137 kb on + strandat 3177.137 kb on + strandat 3177.137 kb on + strandat 3177.137 kb on + strandat 3177.138 kb on - strandat 3177.154 kb on + strandat 3177.154 kb on + strandat 3177.175 kb on + strandat 3177.249 kb on + strandat 3177.250 kb on - strandat 3177.250 kb on - strandat 3177.250 kb on - strandat 3177.292 kb on + strand, within IAI47_15065at 3177.292 kb on + strand, within IAI47_15065at 3177.318 kb on + strand, within IAI47_15065at 3177.370 kb on + strand, within IAI47_15065at 3177.370 kb on + strand, within IAI47_15065at 3177.380 kb on - strand, within IAI47_15065at 3177.433 kb on - strand, within IAI47_15065at 3177.448 kb on + strand, within IAI47_15065at 3177.470 kb on + strand, within IAI47_15065at 3177.470 kb on + strand, within IAI47_15065at 3177.470 kb on + strand, within IAI47_15065at 3177.470 kb on + strand, within IAI47_15065at 3177.470 kb on + strand, within IAI47_15065at 3177.471 kb on - strand, within IAI47_15065at 3177.544 kb on + strand, within IAI47_15065at 3177.545 kb on - strand, within IAI47_15065at 3177.577 kb on + strand, within IAI47_15065at 3177.577 kb on + strand, within IAI47_15065at 3177.577 kb on + strand, within IAI47_15065at 3177.577 kb on + strand, within IAI47_15065at 3177.578 kb on - strand, within IAI47_15065at 3177.653 kb on + strand, within IAI47_15065at 3177.653 kb on + strand, within IAI47_15065at 3177.653 kb on + strand, within IAI47_15065at 3177.654 kb on - strand, within IAI47_15065at 3177.716 kb on + strand, within IAI47_15065at 3177.716 kb on + strand, within IAI47_15065at 3177.717 kb on - strand, within IAI47_15065at 3177.817 kb on + strand, within IAI47_15065at 3177.855 kb on + strand, within IAI47_15065at 3177.855 kb on + strand, within IAI47_15065at 3177.855 kb on + strand, within IAI47_15065at 3177.855 kb on + strand, within IAI47_15065at 3177.855 kb on + strand, within IAI47_15065at 3177.856 kb on - strand, within IAI47_15065at 3177.909 kb on + strand, within IAI47_15065at 3177.910 kb on - strand, within IAI47_15065at 3177.910 kb on - strand, within IAI47_15065at 3177.946 kb on + strand, within IAI47_15065at 3177.947 kb on - strand, within IAI47_15065

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic
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3,175,642 + IAI47_15055 0.33 +0.7
3,175,697 + IAI47_15055 0.37 +0.5
3,175,697 + IAI47_15055 0.37 +2.8
3,175,697 + IAI47_15055 0.37 +5.0
3,175,698 - IAI47_15055 0.37 -0.1
3,175,698 - IAI47_15055 0.37 +0.5
3,175,698 - IAI47_15055 0.37 +1.6
3,175,698 - IAI47_15055 0.37 -0.1
3,175,807 + IAI47_15055 0.45 +1.0
3,175,807 + IAI47_15055 0.45 +1.0
3,175,985 + IAI47_15055 0.57 -0.5
3,175,985 + IAI47_15055 0.57 -0.1
3,175,986 - IAI47_15055 0.57 -1.2
3,176,071 + IAI47_15055 0.64 +0.7
3,176,072 - IAI47_15055 0.64 +0.3
3,176,072 - IAI47_15055 0.64 +0.6
3,176,136 + IAI47_15055 0.68 -0.7
3,176,136 + IAI47_15055 0.68 +0.9
3,176,136 + IAI47_15055 0.68 +1.4
3,176,136 + IAI47_15055 0.68 +1.3
3,176,319 - IAI47_15055 0.82 +0.5
3,176,319 - IAI47_15055 0.82 +0.7
3,176,319 - IAI47_15055 0.82 +1.3
3,176,319 - IAI47_15055 0.82 +2.7
3,176,354 + IAI47_15055 0.84 -1.0
3,176,354 + IAI47_15055 0.84 +0.1
3,176,354 + IAI47_15055 0.84 -1.5
3,176,354 + IAI47_15055 0.84 +0.3
3,176,354 + IAI47_15055 0.84 +0.3
3,176,354 + IAI47_15055 0.84 +0.5
3,176,354 + IAI47_15055 0.84 -0.1
3,176,354 + IAI47_15055 0.84 +3.2
3,176,354 + IAI47_15055 0.84 +0.8
3,176,354 + IAI47_15055 0.84 -0.2
3,176,354 + IAI47_15055 0.84 -0.3
3,176,354 + IAI47_15055 0.84 +0.4
3,176,355 - IAI47_15055 0.84 +0.9
3,176,355 - IAI47_15055 0.84 -0.3
3,176,369 + IAI47_15055 0.85 -0.1
3,176,472 + +0.6
3,176,472 + -0.5
3,176,473 - -0.6
3,176,473 - -2.7
3,176,473 - +0.6
3,176,473 - -1.0
3,176,498 + +0.3
3,176,575 + -0.2
3,176,575 + -0.6
3,176,576 - -0.8
3,176,591 + -1.1
3,176,591 + +1.9
3,176,592 - +3.5
3,176,592 - -1.6
3,176,592 - -0.8
3,176,594 + +0.8
3,176,594 + +0.1
3,176,594 + +1.0
3,176,594 + -1.3
3,176,594 + +1.1
3,176,594 + +0.2
3,176,594 + +0.8
3,176,595 - -1.3
3,176,595 - -0.2
3,176,595 - -0.2
3,176,595 - +0.5
3,176,595 - +1.0
3,176,595 - -0.6
3,176,611 + +1.1
3,176,612 - -0.7
3,176,612 - -1.7
3,176,612 - +1.2
3,176,612 - +0.1
3,176,648 + +0.2
3,176,649 - +0.3
3,176,649 - +0.1
3,176,649 - -1.0
3,176,649 - +1.0
3,176,664 + IAI47_15060 0.14 -0.3
3,176,664 + IAI47_15060 0.14 -0.5
3,176,665 - IAI47_15060 0.14 +1.5
3,176,669 + IAI47_15060 0.15 +0.5
3,176,669 + IAI47_15060 0.15 -0.3
3,176,670 - IAI47_15060 0.15 +1.6
3,176,670 - IAI47_15060 0.15 -2.0
3,176,682 + IAI47_15060 0.18 +5.3
3,176,682 + IAI47_15060 0.18 -0.2
3,176,682 + IAI47_15060 0.18 -1.5
3,176,682 + IAI47_15060 0.18 +4.2
3,176,683 - IAI47_15060 0.19 +1.3
3,176,683 - IAI47_15060 0.19 +1.2
3,176,683 - IAI47_15060 0.19 -0.3
3,176,683 - IAI47_15060 0.19 -1.8
3,176,683 - IAI47_15060 0.19 -0.5
3,176,683 - IAI47_15060 0.19 -1.0
3,176,701 + IAI47_15060 0.23 -0.0
3,176,701 + IAI47_15060 0.23 -0.9
3,176,702 - IAI47_15060 0.23 -0.4
3,176,708 + IAI47_15060 0.25 +1.8
3,176,709 - IAI47_15060 0.25 +0.8
3,176,747 + IAI47_15060 0.35 +1.1
3,176,748 - IAI47_15060 0.35 +1.4
3,176,771 - IAI47_15060 0.41 -0.5
3,176,771 - IAI47_15060 0.41 -0.1
3,176,801 - IAI47_15060 0.49 -2.0
3,176,801 - IAI47_15060 0.49 +0.4
3,176,801 - IAI47_15060 0.49 +0.1
3,176,818 + IAI47_15060 0.53 -1.5
3,176,818 + IAI47_15060 0.53 +0.4
3,176,852 + IAI47_15060 0.62 +0.5
3,176,852 + IAI47_15060 0.62 +5.2
3,176,852 + IAI47_15060 0.62 +1.2
3,176,852 + IAI47_15060 0.62 -0.5
3,176,852 + IAI47_15060 0.62 -0.0
3,176,852 + IAI47_15060 0.62 -0.2
3,176,852 + IAI47_15060 0.62 -1.4
3,176,852 + IAI47_15060 0.62 +0.6
3,176,852 + IAI47_15060 0.62 +0.7
3,176,852 + IAI47_15060 0.62 +0.6
3,176,853 - IAI47_15060 0.62 -0.5
3,176,853 - IAI47_15060 0.62 +0.3
3,176,853 - IAI47_15060 0.62 +2.7
3,176,853 - IAI47_15060 0.62 -1.6
3,176,853 - IAI47_15060 0.62 -0.6
3,176,853 - IAI47_15060 0.62 +2.5
3,176,853 - IAI47_15060 0.62 -0.2
3,176,853 - IAI47_15060 0.62 +0.4
3,176,853 - IAI47_15060 0.62 +0.1
3,176,853 - IAI47_15060 0.62 -1.1
3,176,853 - IAI47_15060 0.62 +1.1
3,176,853 - IAI47_15060 0.62 +0.1
3,176,853 - IAI47_15060 0.62 +1.4
3,176,853 - IAI47_15060 0.62 +0.3
3,176,853 - IAI47_15060 0.62 +2.9
3,176,882 + IAI47_15060 0.69 +0.7
3,176,883 - IAI47_15060 0.69 +0.0
3,176,883 - IAI47_15060 0.69 -1.7
3,176,884 + IAI47_15060 0.70 +1.1
3,176,885 - IAI47_15060 0.70 +1.0
3,176,885 - IAI47_15060 0.70 +1.6
3,176,885 - IAI47_15060 0.70 +0.8
3,176,932 + IAI47_15060 0.82 -0.4
3,176,933 - IAI47_15060 0.82 +1.5
3,176,933 - IAI47_15060 0.82 -1.0
3,176,985 + -0.9
3,177,015 + +0.8
3,177,049 + -0.6
3,177,063 + -0.9
3,177,063 + +4.4
3,177,064 - -0.9
3,177,064 - +0.3
3,177,064 - -0.4
3,177,079 + -1.2
3,177,137 + -0.2
3,177,137 + +0.4
3,177,137 + +0.8
3,177,137 + +2.6
3,177,137 + +2.9
3,177,138 - -0.3
3,177,154 + +1.1
3,177,154 + +0.5
3,177,175 + -1.1
3,177,249 + +1.1
3,177,250 - +0.0
3,177,250 - +2.0
3,177,250 - +0.1
3,177,292 + IAI47_15065 0.13 -1.4
3,177,292 + IAI47_15065 0.13 -1.2
3,177,318 + IAI47_15065 0.15 +0.9
3,177,370 + IAI47_15065 0.21 +1.0
3,177,370 + IAI47_15065 0.21 -1.3
3,177,380 - IAI47_15065 0.22 -1.1
3,177,433 - IAI47_15065 0.27 -0.3
3,177,448 + IAI47_15065 0.29 -0.3
3,177,470 + IAI47_15065 0.31 +0.2
3,177,470 + IAI47_15065 0.31 +1.1
3,177,470 + IAI47_15065 0.31 +0.6
3,177,470 + IAI47_15065 0.31 +1.7
3,177,470 + IAI47_15065 0.31 +0.7
3,177,471 - IAI47_15065 0.31 +1.2
3,177,544 + IAI47_15065 0.39 -0.5
3,177,545 - IAI47_15065 0.39 -0.1
3,177,577 + IAI47_15065 0.42 +5.4
3,177,577 + IAI47_15065 0.42 -0.3
3,177,577 + IAI47_15065 0.42 +0.2
3,177,577 + IAI47_15065 0.42 -1.5
3,177,578 - IAI47_15065 0.42 +0.2
3,177,653 + IAI47_15065 0.50 +0.5
3,177,653 + IAI47_15065 0.50 +0.8
3,177,653 + IAI47_15065 0.50 +2.3
3,177,654 - IAI47_15065 0.50 +0.1
3,177,716 + IAI47_15065 0.57 +3.6
3,177,716 + IAI47_15065 0.57 +2.0
3,177,717 - IAI47_15065 0.57 +1.5
3,177,817 + IAI47_15065 0.67 -2.1
3,177,855 + IAI47_15065 0.71 +0.2
3,177,855 + IAI47_15065 0.71 +3.7
3,177,855 + IAI47_15065 0.71 +5.4
3,177,855 + IAI47_15065 0.71 -0.4
3,177,855 + IAI47_15065 0.71 -0.6
3,177,856 - IAI47_15065 0.71 -2.1
3,177,909 + IAI47_15065 0.77 -0.2
3,177,910 - IAI47_15065 0.77 +0.4
3,177,910 - IAI47_15065 0.77 -0.8
3,177,946 + IAI47_15065 0.81 +0.9
3,177,947 - IAI47_15065 0.81 +1.0

Or see this region's nucleotide sequence