Strain Fitness in Pantoea sp. MT58 around IAI47_12420

Experiment: copper (II) chloride 2 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 2 uM, anaerobic
2,620,928	+		IAI47_12415	0.26	+1.1
2,620,928	+		IAI47_12415	0.26	+3.0
2,620,929	-		IAI47_12415	0.26	-0.3
2,620,964	+		IAI47_12415	0.31	-1.1
2,620,964	+		IAI47_12415	0.31	+0.5
2,620,964	+		IAI47_12415	0.31	-0.2
2,620,986	+		IAI47_12415	0.34	+0.4
2,620,986	+		IAI47_12415	0.34	-1.2
2,620,987	-		IAI47_12415	0.34	-0.4
2,620,987	-		IAI47_12415	0.34	-1.1
2,620,991	+		IAI47_12415	0.34	-0.2
2,620,991	+		IAI47_12415	0.34	-1.2
2,620,991	+		IAI47_12415	0.34	-0.4
2,620,991	+		IAI47_12415	0.34	+0.0
2,620,991	+		IAI47_12415	0.34	-0.6
2,620,991	+		IAI47_12415	0.34	+1.5
2,620,991	+		IAI47_12415	0.34	+0.0
2,620,991	+		IAI47_12415	0.34	-0.3
2,620,992	-		IAI47_12415	0.35	+1.6
2,620,992	-		IAI47_12415	0.35	-0.1
2,620,992	-		IAI47_12415	0.35	-1.3
2,620,992	-		IAI47_12415	0.35	-0.3
2,620,992	-		IAI47_12415	0.35	+0.6
2,620,992	-		IAI47_12415	0.35	+0.6
2,620,992	-		IAI47_12415	0.35	+1.1
2,620,992	-		IAI47_12415	0.35	-1.0
2,620,992	-		IAI47_12415	0.35	+0.5
2,620,992	-		IAI47_12415	0.35	+2.6
2,620,992	-		IAI47_12415	0.35	-1.1
2,620,992	-		IAI47_12415	0.35	-1.9
2,620,998	+		IAI47_12415	0.35	+4.9
2,620,998	+		IAI47_12415	0.35	-1.6
2,620,999	-		IAI47_12415	0.35	+1.5
2,620,999	-		IAI47_12415	0.35	+0.7
2,621,030	+		IAI47_12415	0.40	+0.2
2,621,030	+		IAI47_12415	0.40	+0.4
2,621,030	+		IAI47_12415	0.40	+0.5
2,621,031	-		IAI47_12415	0.40	-0.8
2,621,037	-		IAI47_12415	0.41	-0.4
2,621,109	+		IAI47_12415	0.50	+1.8
2,621,109	+		IAI47_12415	0.50	-2.2
2,621,109	+		IAI47_12415	0.50	+0.5
2,621,110	-		IAI47_12415	0.50	-1.3
2,621,110	-		IAI47_12415	0.50	-0.2
2,621,110	-		IAI47_12415	0.50	+0.8
2,621,110	-		IAI47_12415	0.50	+0.8
2,621,110	-		IAI47_12415	0.50	-0.2
2,621,110	-		IAI47_12415	0.50	+1.8
2,621,142	+		IAI47_12415	0.54	-0.0
2,621,142	+		IAI47_12415	0.54	-0.4
2,621,142	+		IAI47_12415	0.54	+1.2
2,621,142	+		IAI47_12415	0.54	-0.9
2,621,142	+		IAI47_12415	0.54	+0.4
2,621,143	-		IAI47_12415	0.55	-1.9
2,621,143	-		IAI47_12415	0.55	-0.5
2,621,143	-		IAI47_12415	0.55	+5.1
2,621,241	-		IAI47_12415	0.68	+0.9
2,621,241	-		IAI47_12415	0.68	+0.4
2,621,349	+		IAI47_12415	0.82	-0.3
2,621,452	+				+0.1
2,621,452	+				+2.3
2,621,452	+				+0.4
2,621,453	-				-0.2
2,621,453	-				-1.0
2,621,464	+				+4.6
2,621,483	+				-2.1
2,621,483	+				-1.0
2,621,483	+				-1.7
2,621,553	+				+1.0
2,621,553	+				-0.2
2,621,555	+				+0.0
2,621,555	+				-1.0
2,621,556	-				-0.5
2,621,556	-				+1.5
2,621,556	-				-0.3
2,621,560	+				+1.2
2,621,567	-				+0.0
2,621,585	+				-0.5
2,621,592	+				+0.2
2,621,605	+				+0.2
2,621,651	-				+0.8
2,621,654	+				+0.3
2,621,655	-				+0.5
2,621,663	+				+0.7
2,621,664	-				+0.5
2,621,665	+				-0.9
2,621,671	+				+1.0
2,621,686	+				-0.5
2,621,686	+				+0.6
2,621,686	+				+1.7
2,621,789	+				-0.8
2,621,873	+				+0.5
2,621,873	+				+0.3
2,621,873	+				-1.9
2,621,873	+				+1.7
2,621,874	-				-2.3
2,621,874	-				+2.2
2,621,874	-				+1.1
2,621,874	-				+0.8
2,621,874	-				+0.5
2,621,884	+				-0.9
2,621,884	+				+0.1
2,621,884	+				-0.3
2,621,884	+				+0.5
2,621,884	+				+3.0
2,621,884	+				-1.4
2,621,884	+				-0.4
2,621,884	+				+0.3
2,621,884	+				-0.2
2,621,884	+				-0.3
2,621,885	-				+3.7
2,621,885	-				+1.5
2,621,885	-				-0.8
2,621,885	-				-1.5
2,621,885	-				-1.6
2,621,885	-				+2.4
2,621,885	-				-1.0
2,621,886	+				-0.4
2,621,886	+				-0.0
2,621,886	+				-0.4
2,621,886	+				-0.1
2,621,886	+				+0.2
2,621,887	-				-0.9
2,621,887	-				+0.2
2,621,887	-				-0.4
2,621,887	-				-1.0
2,621,887	-				+1.2
2,621,889	+				-0.6
2,621,889	+				-1.1
2,621,890	-				-0.6
2,621,890	-				+1.8
2,621,890	-				+1.0
2,622,008	+		IAI47_12420	0.50	-1.8
2,622,008	+		IAI47_12420	0.50	-2.3
2,622,012	+		IAI47_12420	0.51	+0.5
2,622,013	+		IAI47_12420	0.52	-1.3
2,622,013	-		IAI47_12420	0.52	-0.1
2,622,013	-		IAI47_12420	0.52	-2.2
2,622,015	+		IAI47_12420	0.52	-0.5
2,622,015	+		IAI47_12420	0.52	-0.0
2,622,016	-		IAI47_12420	0.53	+1.2
2,622,016	-		IAI47_12420	0.53	-0.5
2,622,024	+		IAI47_12420	0.56	-2.1
2,622,025	-		IAI47_12420	0.56	+0.4
2,622,025	-		IAI47_12420	0.56	-0.4
2,622,025	-		IAI47_12420	0.56	-0.5
2,622,036	+		IAI47_12420	0.61	-0.6
2,622,036	+		IAI47_12420	0.61	-0.5
2,622,037	-		IAI47_12420	0.61	-2.1
2,622,037	-		IAI47_12420	0.61	-0.5
2,622,037	-		IAI47_12420	0.61	+0.3
2,622,078	+		IAI47_12420	0.77	+0.1
2,622,078	+		IAI47_12420	0.77	-1.4
2,622,079	-		IAI47_12420	0.77	+0.6
2,622,079	-		IAI47_12420	0.77	+1.4
2,622,082	+		IAI47_12420	0.78	-0.3
2,622,082	+		IAI47_12420	0.78	-0.0
2,622,083	-		IAI47_12420	0.79	+0.4
2,622,136	+				+1.2
2,622,136	+				+0.7
2,622,137	-				+3.0
2,622,137	-				+0.4
2,622,199	+				+2.5
2,622,199	+				-0.3
2,622,199	+				-0.9
2,622,199	+				+0.2
2,622,199	+				-0.4
2,622,199	+				+1.0
2,622,200	-				-1.0
2,622,200	-				+0.6
2,622,200	-				+0.5
2,622,256	+				+1.4
2,622,256	+				-0.5
2,622,256	+				+0.8
2,622,256	+				-0.6
2,622,256	+				-2.5
2,622,256	+				+0.3
2,622,256	+				+0.1
2,622,256	+				-0.3
2,622,256	+				+0.6
2,622,257	-				-1.0
2,622,257	-				+0.8
2,622,257	-				-1.3
2,622,275	+				+0.4
2,622,324	-				+0.5
2,622,385	+				+0.8
2,622,385	+				-2.0
2,622,404	-				+0.5
2,622,431	+		IAI47_12425	0.10	-0.6
2,622,432	-		IAI47_12425	0.10	+0.3
2,622,442	+		IAI47_12425	0.11	+0.6
2,622,442	+		IAI47_12425	0.11	+2.0
2,622,442	+		IAI47_12425	0.11	-0.3
2,622,443	-		IAI47_12425	0.11	+0.8
2,622,443	-		IAI47_12425	0.11	-0.4
2,622,449	+		IAI47_12425	0.11	-0.2
2,622,450	-		IAI47_12425	0.12	+0.6
2,622,450	-		IAI47_12425	0.12	+0.1
2,622,551	-		IAI47_12425	0.18	-0.6
2,622,585	+		IAI47_12425	0.21	-0.9
2,622,585	+		IAI47_12425	0.21	-1.3
2,622,585	+		IAI47_12425	0.21	-0.5
2,622,585	+		IAI47_12425	0.21	+1.4
2,622,585	+		IAI47_12425	0.21	-1.4
2,622,586	-		IAI47_12425	0.21	+0.3
2,622,586	-		IAI47_12425	0.21	-0.1
2,622,586	-		IAI47_12425	0.21	+0.6
2,622,586	-		IAI47_12425	0.21	-0.1
2,622,586	-		IAI47_12425	0.21	-0.0
2,622,587	+		IAI47_12425	0.21	+1.2
2,622,587	+		IAI47_12425	0.21	+1.5
2,622,587	+		IAI47_12425	0.21	-0.5
2,622,588	-		IAI47_12425	0.21	+1.0
2,622,588	-		IAI47_12425	0.21	-0.9
2,622,588	-		IAI47_12425	0.21	-1.0
2,622,588	-		IAI47_12425	0.21	+1.1
2,622,588	-		IAI47_12425	0.21	+0.0
2,622,663	+		IAI47_12425	0.26	+1.0
2,622,664	-		IAI47_12425	0.26	-0.9
2,622,664	-		IAI47_12425	0.26	-0.0
2,622,815	-		IAI47_12425	0.36	+0.6
2,622,815	-		IAI47_12425	0.36	-0.5
2,622,847	+		IAI47_12425	0.38	-0.8
2,622,847	+		IAI47_12425	0.38	-0.4
2,622,847	+		IAI47_12425	0.38	-0.7
2,622,848	-		IAI47_12425	0.38	+0.2
2,622,848	-		IAI47_12425	0.38	+0.5
2,622,848	-		IAI47_12425	0.38	+1.1
2,622,868	+		IAI47_12425	0.39	-1.3
2,622,869	-		IAI47_12425	0.39	-1.0
2,622,871	+		IAI47_12425	0.40	-2.1
2,622,871	+		IAI47_12425	0.40	+0.1
2,622,871	+		IAI47_12425	0.40	-0.4
2,622,871	+		IAI47_12425	0.40	+0.3
2,622,872	-		IAI47_12425	0.40	+1.1
2,622,879	+		IAI47_12425	0.40	+0.5
2,622,935	+		IAI47_12425	0.44	-0.2
2,622,936	-		IAI47_12425	0.44	+0.0
2,622,949	+		IAI47_12425	0.45	+1.5
2,622,956	+		IAI47_12425	0.45	-1.2
2,622,977	+		IAI47_12425	0.47	-1.2
2,622,978	-		IAI47_12425	0.47	+1.0
2,622,999	-		IAI47_12425	0.48	+0.3
2,623,073	+		IAI47_12425	0.53	+0.6
2,623,073	+		IAI47_12425	0.53	+1.0
2,623,109	+		IAI47_12425	0.55	-1.2
2,623,109	+		IAI47_12425	0.55	-2.3
2,623,110	-		IAI47_12425	0.55	+0.2