Strain Fitness in Pantoea sp. MT58 around IAI47_08745

Experiment: copper (II) chloride 2 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 2 uM, anaerobic
1,848,021	+		IAI47_08735	0.65	+0.3
1,848,021	+		IAI47_08735	0.65	+0.2
1,848,051	-		IAI47_08735	0.68	+3.3
1,848,052	+		IAI47_08735	0.68	+1.6
1,848,052	+		IAI47_08735	0.68	+0.1
1,848,052	+		IAI47_08735	0.68	-1.0
1,848,053	-		IAI47_08735	0.68	+0.3
1,848,122	+		IAI47_08735	0.75	+1.1
1,848,123	-		IAI47_08735	0.75	-1.1
1,848,123	-		IAI47_08735	0.75	-0.2
1,848,123	-		IAI47_08735	0.75	+1.3
1,848,154	+		IAI47_08735	0.78	+0.7
1,848,154	+		IAI47_08735	0.78	+0.5
1,848,154	+		IAI47_08735	0.78	+0.3
1,848,154	+		IAI47_08735	0.78	+1.5
1,848,155	-		IAI47_08735	0.78	+0.7
1,848,155	-		IAI47_08735	0.78	-1.8
1,848,230	+		IAI47_08735	0.85	-1.5
1,848,230	+		IAI47_08735	0.85	-0.9
1,848,231	-		IAI47_08735	0.86	+0.4
1,848,231	-		IAI47_08735	0.86	-0.1
1,848,231	-		IAI47_08735	0.86	-0.4
1,848,231	-		IAI47_08735	0.86	-0.5
1,848,330	+				+1.3
1,848,330	+				+0.8
1,848,330	+				-0.9
1,848,331	-				+1.2
1,848,353	-				+0.1
1,848,374	+				+0.5
1,848,375	-				+2.5
1,848,388	+				+0.9
1,848,389	-				-1.3
1,848,393	-				-1.0
1,848,445	+				-0.5
1,848,448	+				-0.7
1,848,476	+				+1.4
1,848,492	-				-0.2
1,848,500	-				+4.3
1,848,553	+				+1.8
1,848,578	+				+1.8
1,848,579	-				+0.1
1,848,604	+				-0.1
1,848,604	+				-0.4
1,848,638	-				-1.6
1,848,650	+				+0.1
1,848,650	+				-1.2
1,848,651	-				+0.6
1,848,710	+				-0.4
1,848,710	+				-0.5
1,848,711	-				-0.2
1,848,711	-				+0.4
1,848,728	+				+0.2
1,848,729	-				-0.6
1,848,729	-				+0.8
1,848,766	+				-0.1
1,848,767	-				-0.9
1,848,767	-				-1.2
1,848,767	-				-0.7
1,848,808	+				-0.3
1,848,809	-				-0.9
1,848,814	+				+3.6
1,848,815	-		IAI47_08740	0.10	+0.4
1,848,819	+		IAI47_08740	0.13	+0.2
1,848,819	+		IAI47_08740	0.13	-1.3
1,848,820	-		IAI47_08740	0.14	-0.8
1,848,820	-		IAI47_08740	0.14	+0.2
1,848,826	+		IAI47_08740	0.18	+3.8
1,848,827	-		IAI47_08740	0.19	+0.6
1,848,850	+		IAI47_08740	0.36	+0.0
1,848,862	+		IAI47_08740	0.45	-0.5
1,848,862	+		IAI47_08740	0.45	+0.4
1,848,862	+		IAI47_08740	0.45	-0.9
1,848,862	+		IAI47_08740	0.45	+1.5
1,848,862	+		IAI47_08740	0.45	-0.0
1,848,862	+		IAI47_08740	0.45	-1.2
1,848,862	+		IAI47_08740	0.45	+0.7
1,848,880	+		IAI47_08740	0.58	+4.2
1,848,895	-		IAI47_08740	0.69	+1.9
1,848,914	-		IAI47_08740	0.83	+0.1
1,848,934	+				+0.7
1,848,934	+				-1.2
1,848,934	+				+0.1
1,848,934	+				-0.4
1,848,935	-				-1.1
1,848,938	+				+1.0
1,848,938	+				+1.1
1,848,938	+				-0.5
1,848,939	-				+1.0
1,848,954	-				+0.2
1,848,973	+				-0.7
1,848,973	+				-1.1
1,848,994	+				-1.5
1,848,994	+				-0.7
1,848,994	+				+0.2
1,848,994	+				-2.3
1,848,994	+				-1.0
1,849,002	+				+0.9
1,849,002	+				-0.3
1,849,002	+				-0.2
1,849,002	+				+1.4
1,849,003	-				+1.9
1,849,029	+				+1.6
1,849,029	+				+0.1
1,849,029	+				+0.1
1,849,059	+		IAI47_08745	0.20	-1.1
1,849,075	-		IAI47_08745	0.27	-0.6
1,849,109	+		IAI47_08745	0.43	-0.2
1,849,109	+		IAI47_08745	0.43	-0.5
1,849,209	+				-1.1
1,849,214	+				-0.2
1,849,214	+				-2.6
1,849,214	+				+0.3
1,849,214	+				+1.3
1,849,215	-				+0.7
1,849,221	+				+1.2
1,849,221	+				+1.1
1,849,221	+				+0.7
1,849,221	+				-1.1
1,849,221	+				+0.8
1,849,222	-				-0.1
1,849,222	-				+1.3
1,849,301	+				-0.7
1,849,301	+				+0.9
1,849,301	+				+6.1
1,849,316	+				-1.2
1,849,317	-				+1.3
1,849,324	-				+0.9
1,849,324	-				+0.3
1,849,329	+				-1.0
1,849,329	+				-1.3
1,849,330	-				-1.1
1,849,330	-				-1.2
1,849,330	-				-0.6
1,849,330	-				-1.0
1,849,330	-				+0.5
1,849,330	-				-0.3
1,849,345	-				-0.6
1,849,364	+				-0.5
1,849,364	+				-1.2
1,849,364	+				+1.2
1,849,364	+				-0.9
1,849,364	+				-0.7
1,849,364	+				-0.6
1,849,364	+				-0.8
1,849,364	+				-1.4
1,849,364	+				+0.2
1,849,364	+				+0.5
1,849,364	+				-1.2
1,849,364	+				-0.5
1,849,364	+				+0.3
1,849,365	-				-0.6
1,849,365	-				-0.3
1,849,365	-				+0.4
1,849,365	-				+0.4
1,849,365	-				-0.7
1,849,365	-				-1.3
1,849,365	-				+0.6
1,849,365	-				-0.5
1,849,365	-				-0.1
1,849,464	+		IAI47_08750	0.12	+0.6
1,849,464	+		IAI47_08750	0.12	-1.6
1,849,464	+		IAI47_08750	0.12	+0.6
1,849,465	-		IAI47_08750	0.12	-0.8
1,849,465	-		IAI47_08750	0.12	+0.3
1,849,560	+		IAI47_08750	0.24	-1.3
1,849,561	-		IAI47_08750	0.24	+1.0
1,849,561	-		IAI47_08750	0.24	+0.4
1,849,563	+		IAI47_08750	0.24	+1.2
1,849,563	+		IAI47_08750	0.24	+0.3
1,849,563	+		IAI47_08750	0.24	+4.7
1,849,563	+		IAI47_08750	0.24	-0.9
1,849,564	-		IAI47_08750	0.25	-1.1
1,849,564	-		IAI47_08750	0.25	+1.5
1,849,564	-		IAI47_08750	0.25	-0.0
1,849,564	-		IAI47_08750	0.25	-1.0
1,849,637	+		IAI47_08750	0.34	+1.7
1,849,638	-		IAI47_08750	0.34	-1.5
1,849,638	-		IAI47_08750	0.34	-0.7
1,849,639	+		IAI47_08750	0.34	+0.8
1,849,639	+		IAI47_08750	0.34	-2.3
1,849,639	+		IAI47_08750	0.34	+0.5
1,849,639	+		IAI47_08750	0.34	+1.1
1,849,639	+		IAI47_08750	0.34	+0.3
1,849,639	+		IAI47_08750	0.34	+1.6
1,849,640	-		IAI47_08750	0.34	+0.4
1,849,640	-		IAI47_08750	0.34	-1.3
1,849,640	-		IAI47_08750	0.34	-0.0
1,849,640	-		IAI47_08750	0.34	-0.2
1,849,640	-		IAI47_08750	0.34	-2.0
1,849,640	-		IAI47_08750	0.34	+1.1
1,849,657	-		IAI47_08750	0.36	+1.2
1,849,657	-		IAI47_08750	0.36	-0.6
1,849,659	+		IAI47_08750	0.36	+5.4
1,849,659	+		IAI47_08750	0.36	+1.0
1,849,659	+		IAI47_08750	0.36	-1.1
1,849,659	+		IAI47_08750	0.36	-0.4
1,849,659	+		IAI47_08750	0.36	+5.7
1,849,660	-		IAI47_08750	0.36	+1.4
1,849,660	-		IAI47_08750	0.36	+1.4
1,849,660	-		IAI47_08750	0.36	-2.0
1,849,660	-		IAI47_08750	0.36	-0.8
1,849,700	+		IAI47_08750	0.41	-0.6
1,849,704	+		IAI47_08750	0.42	-0.4
1,849,705	-		IAI47_08750	0.42	+2.4
1,849,793	-		IAI47_08750	0.53	+0.7
1,849,793	-		IAI47_08750	0.53	-1.6
1,849,825	+		IAI47_08750	0.57	-0.3
1,849,825	+		IAI47_08750	0.57	-1.0
1,849,825	+		IAI47_08750	0.57	-0.4
1,849,826	-		IAI47_08750	0.57	-0.7
1,849,826	-		IAI47_08750	0.57	-0.0
1,849,826	-		IAI47_08750	0.57	-1.4
1,849,833	+		IAI47_08750	0.58	-1.3
1,849,833	+		IAI47_08750	0.58	-2.1
1,849,833	+		IAI47_08750	0.58	+2.0
1,849,833	+		IAI47_08750	0.58	+6.0
1,849,834	-		IAI47_08750	0.58	-0.3
1,849,834	-		IAI47_08750	0.58	-0.3
1,849,834	-		IAI47_08750	0.58	+0.4
1,849,834	-		IAI47_08750	0.58	+0.2
1,849,834	-		IAI47_08750	0.58	-0.4
1,849,834	-		IAI47_08750	0.58	+0.8
1,849,888	+		IAI47_08750	0.65	-1.1
1,849,889	-		IAI47_08750	0.65	-1.6
1,849,889	-		IAI47_08750	0.65	-0.8
1,849,941	+		IAI47_08750	0.71	+0.4
1,849,981	-		IAI47_08750	0.76	-0.7
1,849,981	-		IAI47_08750	0.76	-1.6
1,850,148	-				+1.1
1,850,183	+				+1.0
1,850,184	-				-0.7
1,850,184	-				+0.1
1,850,184	-				+0.5
1,850,194	+				-1.4
1,850,195	-				+1.9
1,850,195	-				+0.6
1,850,195	-				+0.3
1,850,196	+				-0.1
1,850,196	+				+0.1
1,850,196	+				+0.1
1,850,196	+				-0.2
1,850,196	+				+1.0
1,850,196	+				+0.1
1,850,196	+				+0.7
1,850,196	+				+1.0
1,850,196	+				-0.1
1,850,196	+				+0.9
1,850,197	-				+1.4
1,850,197	-				-0.3
1,850,197	-				+1.7
1,850,197	-				-0.9
1,850,197	-				+1.5
1,850,197	-				-1.5
1,850,197	-				-1.0
1,850,197	-				-0.4
1,850,197	-				+0.4