Strain Fitness in Rahnella sp. WP5 around EX31_RS17535

Experiment: L-Glutamine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17525 and EX31_RS17530 are separated by 151 nucleotidesEX31_RS17530 and EX31_RS17535 are separated by 298 nucleotidesEX31_RS17535 and EX31_RS17540 are separated by 143 nucleotides EX31_RS17525: EX31_RS17525 - pyridoxal phosphate-dependent aminotransferase, at 57,499 to 58,707 _RS17525 EX31_RS17530: EX31_RS17530 - tRNA-Asn, at 58,859 to 58,934 _RS17530 EX31_RS17535: EX31_RS17535 - DUF1028 domain-containing protein, at 59,233 to 59,883 _RS17535 EX31_RS17540: EX31_RS17540 - ABC transporter substrate-binding protein, at 60,027 to 61,601 _RS17540 Position (kb) 59 60Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 58.477 kb on + strand, within EX31_RS17525at 58.478 kb on - strand, within EX31_RS17525at 58.488 kb on + strand, within EX31_RS17525at 58.510 kb on - strand, within EX31_RS17525at 58.510 kb on - strand, within EX31_RS17525at 58.561 kb on + strand, within EX31_RS17525at 58.562 kb on - strand, within EX31_RS17525at 58.562 kb on - strand, within EX31_RS17525at 58.562 kb on - strand, within EX31_RS17525at 58.562 kb on - strand, within EX31_RS17525at 58.621 kb on + strandat 58.625 kb on + strandat 58.626 kb on - strandat 58.626 kb on - strandat 58.629 kb on + strandat 58.629 kb on + strandat 58.629 kb on + strandat 58.629 kb on + strandat 58.629 kb on + strandat 58.637 kb on - strandat 58.637 kb on - strandat 58.777 kb on + strandat 58.797 kb on + strandat 58.962 kb on + strandat 58.982 kb on + strandat 59.004 kb on - strandat 59.131 kb on + strandat 59.131 kb on + strandat 59.131 kb on + strandat 59.132 kb on - strandat 59.215 kb on - strandat 59.224 kb on + strandat 59.225 kb on - strandat 59.401 kb on - strand, within EX31_RS17535at 59.530 kb on + strand, within EX31_RS17535at 59.531 kb on - strand, within EX31_RS17535at 59.635 kb on + strand, within EX31_RS17535at 59.636 kb on - strand, within EX31_RS17535at 59.636 kb on - strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.687 kb on + strand, within EX31_RS17535at 59.687 kb on + strand, within EX31_RS17535at 59.687 kb on + strand, within EX31_RS17535at 59.688 kb on - strand, within EX31_RS17535at 59.688 kb on - strand, within EX31_RS17535at 59.688 kb on - strand, within EX31_RS17535at 59.710 kb on + strand, within EX31_RS17535at 59.710 kb on + strand, within EX31_RS17535at 59.711 kb on - strand, within EX31_RS17535at 59.711 kb on - strand, within EX31_RS17535at 59.711 kb on - strand, within EX31_RS17535at 59.792 kb on - strand, within EX31_RS17535at 59.883 kb on + strandat 59.884 kb on - strandat 59.887 kb on + strandat 59.887 kb on + strandat 59.887 kb on + strandat 59.887 kb on + strandat 59.888 kb on - strandat 59.888 kb on - strandat 59.888 kb on - strandat 59.999 kb on + strandat 59.999 kb on + strandat 60.000 kb on - strandat 60.000 kb on - strandat 60.000 kb on - strandat 60.008 kb on - strandat 60.008 kb on - strandat 60.008 kb on - strandat 60.053 kb on + strandat 60.053 kb on + strandat 60.053 kb on + strandat 60.053 kb on + strandat 60.054 kb on - strandat 60.054 kb on - strandat 60.054 kb on - strandat 60.054 kb on - strandat 60.214 kb on - strand, within EX31_RS17540at 60.299 kb on + strand, within EX31_RS17540at 60.300 kb on - strand, within EX31_RS17540at 60.313 kb on - strand, within EX31_RS17540at 60.387 kb on - strand, within EX31_RS17540at 60.387 kb on - strand, within EX31_RS17540at 60.483 kb on - strand, within EX31_RS17540at 60.678 kb on + strand, within EX31_RS17540at 60.738 kb on - strand, within EX31_RS17540at 60.781 kb on + strand, within EX31_RS17540at 60.781 kb on + strand, within EX31_RS17540at 60.781 kb on + strand, within EX31_RS17540at 60.882 kb on - strand, within EX31_RS17540at 60.882 kb on - strand, within EX31_RS17540

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
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58,477 + EX31_RS17525 0.81 +1.3
58,478 - EX31_RS17525 0.81 +0.4
58,488 + EX31_RS17525 0.82 +1.3
58,510 - EX31_RS17525 0.84 +0.5
58,510 - EX31_RS17525 0.84 -0.5
58,561 + EX31_RS17525 0.88 +0.3
58,562 - EX31_RS17525 0.88 +1.7
58,562 - EX31_RS17525 0.88 +1.2
58,562 - EX31_RS17525 0.88 -1.3
58,562 - EX31_RS17525 0.88 +0.5
58,621 + +0.1
58,625 + -2.5
58,626 - -0.8
58,626 - -0.7
58,629 + -2.8
58,629 + -1.3
58,629 + -0.7
58,629 + +0.7
58,629 + +0.9
58,637 - -1.0
58,637 - +0.8
58,777 + +0.3
58,797 + +0.5
58,962 + +0.4
58,982 + +0.6
59,004 - -0.8
59,131 + -0.0
59,131 + +1.3
59,131 + +0.9
59,132 - -1.9
59,215 - -0.5
59,224 + +0.5
59,225 - +0.1
59,401 - EX31_RS17535 0.26 -0.7
59,530 + EX31_RS17535 0.46 -0.9
59,531 - EX31_RS17535 0.46 +0.3
59,635 + EX31_RS17535 0.62 -0.1
59,636 - EX31_RS17535 0.62 -0.9
59,636 - EX31_RS17535 0.62 +0.6
59,685 + EX31_RS17535 0.69 +0.3
59,685 + EX31_RS17535 0.69 -0.2
59,685 + EX31_RS17535 0.69 -2.4
59,685 + EX31_RS17535 0.69 -1.3
59,685 + EX31_RS17535 0.69 -0.8
59,685 + EX31_RS17535 0.69 +1.0
59,685 + EX31_RS17535 0.69 +0.3
59,685 + EX31_RS17535 0.69 -0.5
59,685 + EX31_RS17535 0.69 -0.1
59,686 - EX31_RS17535 0.70 +0.8
59,686 - EX31_RS17535 0.70 +0.6
59,686 - EX31_RS17535 0.70 -0.6
59,686 - EX31_RS17535 0.70 -0.9
59,686 - EX31_RS17535 0.70 +0.1
59,686 - EX31_RS17535 0.70 -0.6
59,686 - EX31_RS17535 0.70 +0.4
59,686 - EX31_RS17535 0.70 +0.3
59,686 - EX31_RS17535 0.70 -1.0
59,686 - EX31_RS17535 0.70 +0.2
59,686 - EX31_RS17535 0.70 -0.7
59,686 - EX31_RS17535 0.70 -0.6
59,687 + EX31_RS17535 0.70 +0.5
59,687 + EX31_RS17535 0.70 -1.0
59,687 + EX31_RS17535 0.70 +0.7
59,688 - EX31_RS17535 0.70 +0.2
59,688 - EX31_RS17535 0.70 -1.4
59,688 - EX31_RS17535 0.70 +0.3
59,710 + EX31_RS17535 0.73 -0.8
59,710 + EX31_RS17535 0.73 +0.6
59,711 - EX31_RS17535 0.73 +0.3
59,711 - EX31_RS17535 0.73 -1.1
59,711 - EX31_RS17535 0.73 +0.3
59,792 - EX31_RS17535 0.86 -2.3
59,883 + +2.1
59,884 - -0.1
59,887 + -0.3
59,887 + +1.3
59,887 + -0.8
59,887 + +1.8
59,888 - +1.4
59,888 - +1.9
59,888 - +0.1
59,999 + -0.1
59,999 + +0.2
60,000 - -1.3
60,000 - -0.1
60,000 - +0.2
60,008 - -0.3
60,008 - +0.6
60,008 - +0.3
60,053 + +1.5
60,053 + +0.7
60,053 + -0.5
60,053 + -0.4
60,054 - +0.9
60,054 - -0.1
60,054 - +0.4
60,054 - +0.6
60,214 - EX31_RS17540 0.12 +1.4
60,299 + EX31_RS17540 0.17 +0.4
60,300 - EX31_RS17540 0.17 +0.3
60,313 - EX31_RS17540 0.18 -1.1
60,387 - EX31_RS17540 0.23 -0.8
60,387 - EX31_RS17540 0.23 -0.4
60,483 - EX31_RS17540 0.29 +0.3
60,678 + EX31_RS17540 0.41 +0.5
60,738 - EX31_RS17540 0.45 +1.4
60,781 + EX31_RS17540 0.48 +0.2
60,781 + EX31_RS17540 0.48 +0.9
60,781 + EX31_RS17540 0.48 +0.5
60,882 - EX31_RS17540 0.54 +1.3
60,882 - EX31_RS17540 0.54 +0.9

Or see this region's nucleotide sequence