Strain Fitness in Rahnella sp. WP5 around EX31_RS10720

Experiment: L-Glutamine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10705 and EX31_RS10710 are separated by 49 nucleotidesEX31_RS10710 and EX31_RS10715 overlap by 4 nucleotidesEX31_RS10715 and EX31_RS10720 are separated by 216 nucleotidesEX31_RS10720 and EX31_RS10725 are separated by 55 nucleotidesEX31_RS10725 and EX31_RS10730 are separated by 98 nucleotides EX31_RS10705: EX31_RS10705 - adhesin, at 58,080 to 59,216 _RS10705 EX31_RS10710: EX31_RS10710 - hypothetical protein, at 59,266 to 59,682 _RS10710 EX31_RS10715: EX31_RS10715 - hypothetical protein, at 59,679 to 59,903 _RS10715 EX31_RS10720: EX31_RS10720 - NAD(P)H:quinone oxidoreductase, at 60,120 to 60,809 _RS10720 EX31_RS10725: EX31_RS10725 - plasmid maintenance protein CcdB, at 60,865 to 61,053 _RS10725 EX31_RS10730: EX31_RS10730 - elongation factor G, at 61,152 to 63,257 _RS10730 Position (kb) 60 61Strain fitness (log2 ratio) -2 -1 0 1 2 3at 59.177 kb on + strandat 59.178 kb on - strandat 59.178 kb on - strandat 59.214 kb on + strandat 59.215 kb on - strandat 59.317 kb on - strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.377 kb on - strand, within EX31_RS10710at 59.377 kb on - strand, within EX31_RS10710at 59.377 kb on - strand, within EX31_RS10710at 59.377 kb on - strand, within EX31_RS10710at 59.452 kb on + strand, within EX31_RS10710at 59.490 kb on + strand, within EX31_RS10710at 59.496 kb on + strand, within EX31_RS10710at 59.533 kb on + strand, within EX31_RS10710at 59.533 kb on + strand, within EX31_RS10710at 59.533 kb on + strand, within EX31_RS10710at 59.534 kb on - strand, within EX31_RS10710at 59.535 kb on + strand, within EX31_RS10710at 59.536 kb on - strand, within EX31_RS10710at 59.615 kb on - strand, within EX31_RS10710at 59.615 kb on - strand, within EX31_RS10710at 59.617 kb on + strand, within EX31_RS10710at 59.617 kb on + strand, within EX31_RS10710at 59.662 kb on + strandat 59.730 kb on + strand, within EX31_RS10715at 59.730 kb on + strand, within EX31_RS10715at 59.730 kb on + strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.733 kb on - strand, within EX31_RS10715at 59.733 kb on - strand, within EX31_RS10715at 59.923 kb on + strandat 59.923 kb on + strandat 59.924 kb on - strandat 59.925 kb on + strandat 59.967 kb on + strandat 59.968 kb on - strandat 59.968 kb on - strandat 59.970 kb on + strandat 59.970 kb on + strandat 59.970 kb on + strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.972 kb on + strandat 59.972 kb on + strandat 59.973 kb on - strandat 59.973 kb on - strandat 59.973 kb on - strandat 59.973 kb on - strandat 59.974 kb on + strandat 59.974 kb on + strandat 59.974 kb on + strandat 59.974 kb on + strandat 59.975 kb on - strandat 59.975 kb on - strandat 59.975 kb on - strandat 59.975 kb on - strandat 59.975 kb on - strandat 60.015 kb on + strandat 60.016 kb on - strandat 60.016 kb on - strandat 60.016 kb on - strandat 60.048 kb on + strandat 60.049 kb on - strandat 60.149 kb on + strandat 60.205 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.316 kb on + strand, within EX31_RS10720at 60.418 kb on - strand, within EX31_RS10720at 60.542 kb on - strand, within EX31_RS10720at 60.542 kb on - strand, within EX31_RS10720at 60.542 kb on - strand, within EX31_RS10720at 60.584 kb on + strand, within EX31_RS10720at 60.584 kb on + strand, within EX31_RS10720at 60.584 kb on + strand, within EX31_RS10720at 60.760 kb on + strandat 60.918 kb on + strand, within EX31_RS10725at 60.930 kb on + strand, within EX31_RS10725at 60.989 kb on - strand, within EX31_RS10725at 61.040 kb on - strandat 61.042 kb on + strandat 61.042 kb on + strandat 61.067 kb on - strandat 61.067 kb on - strandat 61.069 kb on + strandat 61.070 kb on - strandat 61.070 kb on - strandat 61.138 kb on + strandat 61.157 kb on + strandat 61.158 kb on - strandat 61.158 kb on - strandat 61.158 kb on - strandat 61.229 kb on - strandat 61.229 kb on - strandat 61.229 kb on - strandat 61.271 kb on - strandat 61.353 kb on - strandat 61.526 kb on - strand, within EX31_RS10730at 61.628 kb on - strand, within EX31_RS10730at 61.628 kb on - strand, within EX31_RS10730at 61.628 kb on - strand, within EX31_RS10730at 61.628 kb on - strand, within EX31_RS10730at 61.628 kb on - strand, within EX31_RS10730

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
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59,177 + +1.1
59,178 - +0.3
59,178 - -1.5
59,214 + +1.0
59,215 - +0.9
59,317 - EX31_RS10710 0.12 -1.0
59,374 + EX31_RS10710 0.26 +0.5
59,374 + EX31_RS10710 0.26 +0.7
59,374 + EX31_RS10710 0.26 +0.7
59,374 + EX31_RS10710 0.26 -0.1
59,374 + EX31_RS10710 0.26 -1.1
59,374 + EX31_RS10710 0.26 +1.7
59,375 - EX31_RS10710 0.26 +0.7
59,375 - EX31_RS10710 0.26 +1.2
59,375 - EX31_RS10710 0.26 +0.4
59,375 - EX31_RS10710 0.26 -0.7
59,375 - EX31_RS10710 0.26 -0.1
59,375 - EX31_RS10710 0.26 +1.0
59,375 - EX31_RS10710 0.26 +2.3
59,377 - EX31_RS10710 0.27 +0.7
59,377 - EX31_RS10710 0.27 +2.5
59,377 - EX31_RS10710 0.27 +0.0
59,377 - EX31_RS10710 0.27 +1.2
59,452 + EX31_RS10710 0.45 +0.5
59,490 + EX31_RS10710 0.54 +0.4
59,496 + EX31_RS10710 0.55 +0.3
59,533 + EX31_RS10710 0.64 +0.3
59,533 + EX31_RS10710 0.64 +0.2
59,533 + EX31_RS10710 0.64 +0.7
59,534 - EX31_RS10710 0.64 -1.4
59,535 + EX31_RS10710 0.65 +1.2
59,536 - EX31_RS10710 0.65 +1.9
59,615 - EX31_RS10710 0.84 +0.0
59,615 - EX31_RS10710 0.84 +0.6
59,617 + EX31_RS10710 0.84 +0.1
59,617 + EX31_RS10710 0.84 +1.0
59,662 + +0.7
59,730 + EX31_RS10715 0.23 -0.4
59,730 + EX31_RS10715 0.23 +3.2
59,730 + EX31_RS10715 0.23 +0.6
59,731 - EX31_RS10715 0.23 +1.7
59,731 - EX31_RS10715 0.23 -1.1
59,731 - EX31_RS10715 0.23 +0.3
59,731 - EX31_RS10715 0.23 +1.5
59,731 - EX31_RS10715 0.23 +1.5
59,732 + EX31_RS10715 0.24 -0.1
59,732 + EX31_RS10715 0.24 +0.7
59,732 + EX31_RS10715 0.24 +0.2
59,732 + EX31_RS10715 0.24 -0.4
59,732 + EX31_RS10715 0.24 -0.4
59,732 + EX31_RS10715 0.24 +0.9
59,733 - EX31_RS10715 0.24 +0.1
59,733 - EX31_RS10715 0.24 +0.9
59,923 + +0.0
59,923 + +0.8
59,924 - +0.5
59,925 + +0.1
59,967 + +0.9
59,968 - +1.2
59,968 - +0.6
59,970 + +0.9
59,970 + +0.7
59,970 + +0.3
59,971 - -0.5
59,971 - +1.1
59,971 - +0.4
59,971 - -0.2
59,971 - +0.5
59,972 + +0.1
59,972 + +0.5
59,973 - -1.4
59,973 - +0.8
59,973 - -1.9
59,973 - +0.7
59,974 + +1.2
59,974 + +1.2
59,974 + +0.2
59,974 + -0.1
59,975 - +0.7
59,975 - -1.1
59,975 - +2.1
59,975 - -0.4
59,975 - +1.5
60,015 + -2.2
60,016 - +1.2
60,016 - +0.2
60,016 - +0.8
60,048 + -0.3
60,049 - +1.4
60,149 + +1.4
60,205 + EX31_RS10720 0.12 +0.3
60,243 + EX31_RS10720 0.18 +0.3
60,243 + EX31_RS10720 0.18 -0.9
60,243 + EX31_RS10720 0.18 +0.7
60,243 + EX31_RS10720 0.18 +1.2
60,243 + EX31_RS10720 0.18 -0.4
60,244 - EX31_RS10720 0.18 -1.7
60,244 - EX31_RS10720 0.18 +2.8
60,244 - EX31_RS10720 0.18 -0.2
60,244 - EX31_RS10720 0.18 -0.2
60,244 - EX31_RS10720 0.18 +1.3
60,316 + EX31_RS10720 0.28 +1.9
60,418 - EX31_RS10720 0.43 +0.5
60,542 - EX31_RS10720 0.61 +0.9
60,542 - EX31_RS10720 0.61 +1.9
60,542 - EX31_RS10720 0.61 -0.3
60,584 + EX31_RS10720 0.67 +1.9
60,584 + EX31_RS10720 0.67 -0.1
60,584 + EX31_RS10720 0.67 +0.4
60,760 + +1.5
60,918 + EX31_RS10725 0.28 -0.2
60,930 + EX31_RS10725 0.34 +1.1
60,989 - EX31_RS10725 0.66 +0.0
61,040 - +0.0
61,042 + -0.9
61,042 + +2.0
61,067 - +0.9
61,067 - -1.1
61,069 + +0.9
61,070 - +1.3
61,070 - -0.5
61,138 + +0.7
61,157 + +0.2
61,158 - -1.6
61,158 - +1.2
61,158 - +0.7
61,229 - -1.1
61,229 - +0.5
61,229 - +0.4
61,271 - +0.9
61,353 - -1.7
61,526 - EX31_RS10730 0.18 -0.3
61,628 - EX31_RS10730 0.23 +0.6
61,628 - EX31_RS10730 0.23 -0.2
61,628 - EX31_RS10730 0.23 -0.1
61,628 - EX31_RS10730 0.23 -0.7
61,628 - EX31_RS10730 0.23 +0.1

Or see this region's nucleotide sequence