Strain Fitness in Rahnella sp. WP5 around EX31_RS07445

Experiment: L-Glutamine (N); ShewMM media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS07435 and EX31_RS07440 overlap by 17 nucleotidesEX31_RS07440 and EX31_RS07445 are separated by 3 nucleotidesEX31_RS07445 and EX31_RS07450 overlap by 1 nucleotidesEX31_RS07450 and EX31_RS07455 are separated by 13 nucleotides EX31_RS07435: EX31_RS07435 - urea carboxylase-associated family protein, at 300,755 to 301,384 _RS07435 EX31_RS07440: EX31_RS07440 - urea carboxylase-associated family protein, at 301,368 to 302,015 _RS07440 EX31_RS07445: EX31_RS07445 - amino acid ABC transporter permease, at 302,019 to 302,672 _RS07445 EX31_RS07450: EX31_RS07450 - amino acid ABC transporter permease, at 302,672 to 303,337 _RS07450 EX31_RS07455: EX31_RS07455 - urea carboxylase-associated family protein, at 303,351 to 304,028 _RS07455 Position (kb) 302 303Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 301.133 kb on + strand, within EX31_RS07435at 301.133 kb on + strand, within EX31_RS07435at 301.133 kb on + strand, within EX31_RS07435at 301.220 kb on - strand, within EX31_RS07435at 301.234 kb on + strand, within EX31_RS07435at 301.234 kb on + strand, within EX31_RS07435at 301.234 kb on + strand, within EX31_RS07435at 301.234 kb on + strand, within EX31_RS07435at 301.433 kb on + strand, within EX31_RS07440at 301.434 kb on - strand, within EX31_RS07440at 301.577 kb on - strand, within EX31_RS07440at 301.590 kb on + strand, within EX31_RS07440at 301.664 kb on - strand, within EX31_RS07440at 301.886 kb on + strand, within EX31_RS07440at 301.955 kb on + strandat 301.955 kb on + strandat 302.094 kb on - strand, within EX31_RS07445at 302.144 kb on + strand, within EX31_RS07445at 302.153 kb on - strand, within EX31_RS07445at 302.190 kb on + strand, within EX31_RS07445at 302.190 kb on + strand, within EX31_RS07445at 302.323 kb on - strand, within EX31_RS07445at 302.346 kb on - strand, within EX31_RS07445at 302.421 kb on + strand, within EX31_RS07445at 302.421 kb on + strand, within EX31_RS07445at 302.495 kb on + strand, within EX31_RS07445at 302.535 kb on + strand, within EX31_RS07445at 302.536 kb on - strand, within EX31_RS07445at 302.566 kb on - strand, within EX31_RS07445at 302.876 kb on - strand, within EX31_RS07450at 302.880 kb on - strand, within EX31_RS07450at 302.880 kb on - strand, within EX31_RS07450at 302.921 kb on - strand, within EX31_RS07450at 302.957 kb on + strand, within EX31_RS07450at 302.957 kb on + strand, within EX31_RS07450at 302.957 kb on + strand, within EX31_RS07450at 302.957 kb on + strand, within EX31_RS07450at 302.957 kb on + strand, within EX31_RS07450at 302.957 kb on + strand, within EX31_RS07450at 302.957 kb on + strand, within EX31_RS07450at 302.958 kb on - strand, within EX31_RS07450at 302.958 kb on - strand, within EX31_RS07450at 302.960 kb on + strand, within EX31_RS07450at 302.961 kb on - strand, within EX31_RS07450at 302.969 kb on + strand, within EX31_RS07450at 302.969 kb on + strand, within EX31_RS07450at 302.969 kb on + strand, within EX31_RS07450at 302.969 kb on + strand, within EX31_RS07450at 302.970 kb on - strand, within EX31_RS07450at 302.972 kb on - strand, within EX31_RS07450at 303.162 kb on + strand, within EX31_RS07450at 303.162 kb on + strand, within EX31_RS07450at 303.178 kb on + strand, within EX31_RS07450at 303.178 kb on + strand, within EX31_RS07450at 303.178 kb on + strand, within EX31_RS07450at 303.178 kb on + strand, within EX31_RS07450at 303.178 kb on + strand, within EX31_RS07450at 303.179 kb on - strand, within EX31_RS07450at 303.179 kb on - strand, within EX31_RS07450at 303.182 kb on + strand, within EX31_RS07450at 303.182 kb on + strand, within EX31_RS07450at 303.182 kb on + strand, within EX31_RS07450at 303.182 kb on + strand, within EX31_RS07450at 303.230 kb on + strand, within EX31_RS07450at 303.230 kb on + strand, within EX31_RS07450at 303.230 kb on + strand, within EX31_RS07450at 303.335 kb on + strandat 303.336 kb on - strandat 303.405 kb on - strandat 303.484 kb on - strand, within EX31_RS07455at 303.507 kb on + strand, within EX31_RS07455at 303.507 kb on + strand, within EX31_RS07455at 303.507 kb on + strand, within EX31_RS07455at 303.508 kb on - strand, within EX31_RS07455at 303.508 kb on - strand, within EX31_RS07455at 303.508 kb on - strand, within EX31_RS07455at 303.508 kb on - strand, within EX31_RS07455at 303.508 kb on - strand, within EX31_RS07455at 303.509 kb on + strand, within EX31_RS07455at 303.509 kb on + strand, within EX31_RS07455at 303.509 kb on + strand, within EX31_RS07455at 303.509 kb on + strand, within EX31_RS07455at 303.509 kb on + strand, within EX31_RS07455at 303.509 kb on + strand, within EX31_RS07455at 303.510 kb on - strand, within EX31_RS07455at 303.515 kb on + strand, within EX31_RS07455at 303.515 kb on + strand, within EX31_RS07455at 303.515 kb on + strand, within EX31_RS07455at 303.515 kb on + strand, within EX31_RS07455at 303.515 kb on + strand, within EX31_RS07455at 303.516 kb on - strand, within EX31_RS07455at 303.516 kb on - strand, within EX31_RS07455

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
remove
301,133 + EX31_RS07435 0.60 -2.1
301,133 + EX31_RS07435 0.60 +1.7
301,133 + EX31_RS07435 0.60 +0.5
301,220 - EX31_RS07435 0.74 +0.7
301,234 + EX31_RS07435 0.76 -0.8
301,234 + EX31_RS07435 0.76 +0.4
301,234 + EX31_RS07435 0.76 -1.8
301,234 + EX31_RS07435 0.76 +0.3
301,433 + EX31_RS07440 0.10 +1.1
301,434 - EX31_RS07440 0.10 +0.1
301,577 - EX31_RS07440 0.32 +0.6
301,590 + EX31_RS07440 0.34 +0.1
301,664 - EX31_RS07440 0.46 -0.3
301,886 + EX31_RS07440 0.80 +0.4
301,955 + -0.3
301,955 + +1.3
302,094 - EX31_RS07445 0.11 +1.0
302,144 + EX31_RS07445 0.19 +1.0
302,153 - EX31_RS07445 0.20 +2.3
302,190 + EX31_RS07445 0.26 +1.7
302,190 + EX31_RS07445 0.26 +1.1
302,323 - EX31_RS07445 0.46 +1.1
302,346 - EX31_RS07445 0.50 +1.7
302,421 + EX31_RS07445 0.61 -1.6
302,421 + EX31_RS07445 0.61 -0.2
302,495 + EX31_RS07445 0.73 +1.7
302,535 + EX31_RS07445 0.79 +0.5
302,536 - EX31_RS07445 0.79 +0.1
302,566 - EX31_RS07445 0.84 +1.3
302,876 - EX31_RS07450 0.31 -1.4
302,880 - EX31_RS07450 0.31 +1.1
302,880 - EX31_RS07450 0.31 -0.4
302,921 - EX31_RS07450 0.37 -1.8
302,957 + EX31_RS07450 0.43 -0.2
302,957 + EX31_RS07450 0.43 +0.5
302,957 + EX31_RS07450 0.43 -0.3
302,957 + EX31_RS07450 0.43 -1.1
302,957 + EX31_RS07450 0.43 -0.6
302,957 + EX31_RS07450 0.43 +0.6
302,957 + EX31_RS07450 0.43 +0.4
302,958 - EX31_RS07450 0.43 +0.6
302,958 - EX31_RS07450 0.43 +0.1
302,960 + EX31_RS07450 0.43 -1.5
302,961 - EX31_RS07450 0.43 +0.5
302,969 + EX31_RS07450 0.45 -0.4
302,969 + EX31_RS07450 0.45 +1.7
302,969 + EX31_RS07450 0.45 +1.5
302,969 + EX31_RS07450 0.45 -1.7
302,970 - EX31_RS07450 0.45 -0.4
302,972 - EX31_RS07450 0.45 -0.4
303,162 + EX31_RS07450 0.74 -1.3
303,162 + EX31_RS07450 0.74 +1.0
303,178 + EX31_RS07450 0.76 +0.7
303,178 + EX31_RS07450 0.76 +1.7
303,178 + EX31_RS07450 0.76 -0.6
303,178 + EX31_RS07450 0.76 +1.3
303,178 + EX31_RS07450 0.76 +0.3
303,179 - EX31_RS07450 0.76 +0.4
303,179 - EX31_RS07450 0.76 +0.1
303,182 + EX31_RS07450 0.77 +0.0
303,182 + EX31_RS07450 0.77 +0.6
303,182 + EX31_RS07450 0.77 -0.4
303,182 + EX31_RS07450 0.77 -0.2
303,230 + EX31_RS07450 0.84 +0.7
303,230 + EX31_RS07450 0.84 -0.7
303,230 + EX31_RS07450 0.84 +0.1
303,335 + +1.1
303,336 - +1.3
303,405 - +1.1
303,484 - EX31_RS07455 0.20 +0.1
303,507 + EX31_RS07455 0.23 -0.6
303,507 + EX31_RS07455 0.23 -0.6
303,507 + EX31_RS07455 0.23 +0.3
303,508 - EX31_RS07455 0.23 +1.7
303,508 - EX31_RS07455 0.23 +0.7
303,508 - EX31_RS07455 0.23 +0.4
303,508 - EX31_RS07455 0.23 -1.3
303,508 - EX31_RS07455 0.23 +0.5
303,509 + EX31_RS07455 0.23 +0.3
303,509 + EX31_RS07455 0.23 +0.0
303,509 + EX31_RS07455 0.23 -0.4
303,509 + EX31_RS07455 0.23 +1.5
303,509 + EX31_RS07455 0.23 +2.5
303,509 + EX31_RS07455 0.23 -0.1
303,510 - EX31_RS07455 0.23 +0.2
303,515 + EX31_RS07455 0.24 -2.3
303,515 + EX31_RS07455 0.24 +0.1
303,515 + EX31_RS07455 0.24 -0.2
303,515 + EX31_RS07455 0.24 +4.3
303,515 + EX31_RS07455 0.24 -0.4
303,516 - EX31_RS07455 0.24 -0.6
303,516 - EX31_RS07455 0.24 -0.2

Or see this region's nucleotide sequence