Strain Fitness in Rahnella sp. WP5 around EX31_RS05505

Experiment: L-Glutamine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05500 and EX31_RS05505 are separated by 10 nucleotidesEX31_RS05505 and EX31_RS05510 are separated by 10 nucleotides EX31_RS05500: EX31_RS05500 - dipeptide ABC transporter ATP-binding protein, at 252,131 to 253,156 _RS05500 EX31_RS05505: EX31_RS05505 - dipeptide ABC transporter permease DppC, at 253,167 to 254,081 _RS05505 EX31_RS05510: EX31_RS05510 - dipeptide ABC transporter permease DppB, at 254,092 to 255,111 _RS05510 Position (kb) 253 254 255Strain fitness (log2 ratio) -2 -1 0 1 2 3at 252.226 kb on + strandat 252.246 kb on + strand, within EX31_RS05500at 252.246 kb on + strand, within EX31_RS05500at 252.247 kb on - strand, within EX31_RS05500at 252.277 kb on + strand, within EX31_RS05500at 252.288 kb on + strand, within EX31_RS05500at 252.288 kb on + strand, within EX31_RS05500at 252.288 kb on + strand, within EX31_RS05500at 252.288 kb on + strand, within EX31_RS05500at 252.288 kb on + strand, within EX31_RS05500at 252.288 kb on + strand, within EX31_RS05500at 252.288 kb on + strand, within EX31_RS05500at 252.288 kb on + strand, within EX31_RS05500at 252.288 kb on + strand, within EX31_RS05500at 252.288 kb on + strand, within EX31_RS05500at 252.288 kb on + strand, within EX31_RS05500at 252.288 kb on + strand, within EX31_RS05500at 252.289 kb on - strand, within EX31_RS05500at 252.289 kb on - strand, within EX31_RS05500at 252.289 kb on - strand, within EX31_RS05500at 252.289 kb on - strand, within EX31_RS05500at 252.331 kb on + strand, within EX31_RS05500at 252.332 kb on - strand, within EX31_RS05500at 252.376 kb on - strand, within EX31_RS05500at 252.376 kb on - strand, within EX31_RS05500at 252.376 kb on - strand, within EX31_RS05500at 252.425 kb on + strand, within EX31_RS05500at 252.426 kb on - strand, within EX31_RS05500at 252.426 kb on - strand, within EX31_RS05500at 252.426 kb on - strand, within EX31_RS05500at 252.426 kb on - strand, within EX31_RS05500at 252.438 kb on + strand, within EX31_RS05500at 252.438 kb on + strand, within EX31_RS05500at 252.438 kb on + strand, within EX31_RS05500at 252.438 kb on + strand, within EX31_RS05500at 252.438 kb on + strand, within EX31_RS05500at 252.438 kb on + strand, within EX31_RS05500at 252.439 kb on - strand, within EX31_RS05500at 252.439 kb on - strand, within EX31_RS05500at 252.439 kb on - strand, within EX31_RS05500at 252.439 kb on - strand, within EX31_RS05500at 252.439 kb on - strand, within EX31_RS05500at 252.439 kb on - strand, within EX31_RS05500at 252.448 kb on + strand, within EX31_RS05500at 252.448 kb on + strand, within EX31_RS05500at 252.449 kb on - strand, within EX31_RS05500at 252.449 kb on - strand, within EX31_RS05500at 252.599 kb on + strand, within EX31_RS05500at 252.599 kb on + strand, within EX31_RS05500at 252.600 kb on - strand, within EX31_RS05500at 252.672 kb on + strand, within EX31_RS05500at 252.672 kb on + strand, within EX31_RS05500at 252.673 kb on - strand, within EX31_RS05500at 252.784 kb on + strand, within EX31_RS05500at 252.804 kb on + strand, within EX31_RS05500at 252.804 kb on + strand, within EX31_RS05500at 252.804 kb on + strand, within EX31_RS05500at 252.805 kb on - strand, within EX31_RS05500at 252.901 kb on + strand, within EX31_RS05500at 253.038 kb on + strand, within EX31_RS05500at 253.038 kb on + strand, within EX31_RS05500at 253.039 kb on - strand, within EX31_RS05500at 253.039 kb on - strand, within EX31_RS05500at 253.046 kb on - strand, within EX31_RS05500at 253.052 kb on + strand, within EX31_RS05500at 253.052 kb on + strand, within EX31_RS05500at 253.099 kb on + strandat 253.175 kb on + strandat 253.175 kb on + strandat 253.175 kb on + strandat 253.175 kb on + strandat 253.175 kb on + strandat 253.175 kb on + strandat 253.176 kb on - strandat 253.176 kb on - strandat 253.176 kb on - strandat 253.176 kb on - strandat 253.176 kb on - strandat 253.176 kb on - strandat 253.176 kb on - strandat 253.176 kb on - strandat 253.220 kb on + strandat 253.221 kb on - strandat 253.221 kb on - strandat 253.293 kb on + strand, within EX31_RS05505at 253.293 kb on + strand, within EX31_RS05505at 253.294 kb on - strand, within EX31_RS05505at 253.430 kb on + strand, within EX31_RS05505at 253.431 kb on - strand, within EX31_RS05505at 253.431 kb on - strand, within EX31_RS05505at 253.431 kb on - strand, within EX31_RS05505at 253.431 kb on - strand, within EX31_RS05505at 253.431 kb on - strand, within EX31_RS05505at 253.431 kb on - strand, within EX31_RS05505at 253.435 kb on - strand, within EX31_RS05505at 253.435 kb on - strand, within EX31_RS05505at 253.439 kb on + strand, within EX31_RS05505at 253.440 kb on - strand, within EX31_RS05505at 253.440 kb on - strand, within EX31_RS05505at 253.440 kb on - strand, within EX31_RS05505at 253.440 kb on - strand, within EX31_RS05505at 253.495 kb on + strand, within EX31_RS05505at 253.496 kb on - strand, within EX31_RS05505at 253.496 kb on - strand, within EX31_RS05505at 253.543 kb on + strand, within EX31_RS05505at 253.543 kb on + strand, within EX31_RS05505at 253.543 kb on + strand, within EX31_RS05505at 253.543 kb on + strand, within EX31_RS05505at 253.543 kb on + strand, within EX31_RS05505at 253.544 kb on - strand, within EX31_RS05505at 253.544 kb on - strand, within EX31_RS05505at 253.544 kb on - strand, within EX31_RS05505at 253.544 kb on - strand, within EX31_RS05505at 253.544 kb on - strand, within EX31_RS05505at 253.544 kb on - strand, within EX31_RS05505at 253.544 kb on - strand, within EX31_RS05505at 253.544 kb on - strand, within EX31_RS05505at 253.544 kb on - strand, within EX31_RS05505at 253.544 kb on - strand, within EX31_RS05505at 253.544 kb on - strand, within EX31_RS05505at 253.652 kb on + strand, within EX31_RS05505at 253.693 kb on + strand, within EX31_RS05505at 253.694 kb on - strand, within EX31_RS05505at 253.694 kb on - strand, within EX31_RS05505at 253.740 kb on + strand, within EX31_RS05505at 253.741 kb on - strand, within EX31_RS05505at 253.783 kb on + strand, within EX31_RS05505at 253.783 kb on + strand, within EX31_RS05505at 253.783 kb on + strand, within EX31_RS05505at 253.784 kb on - strand, within EX31_RS05505at 253.803 kb on - strand, within EX31_RS05505at 253.949 kb on + strand, within EX31_RS05505at 253.949 kb on + strand, within EX31_RS05505at 253.949 kb on + strand, within EX31_RS05505at 253.949 kb on + strand, within EX31_RS05505at 253.949 kb on + strand, within EX31_RS05505at 253.950 kb on - strand, within EX31_RS05505at 253.950 kb on - strand, within EX31_RS05505at 253.950 kb on - strand, within EX31_RS05505at 253.950 kb on - strand, within EX31_RS05505at 253.957 kb on + strand, within EX31_RS05505at 253.957 kb on + strand, within EX31_RS05505at 253.957 kb on + strand, within EX31_RS05505at 253.957 kb on + strand, within EX31_RS05505at 253.958 kb on - strand, within EX31_RS05505at 253.958 kb on - strand, within EX31_RS05505at 253.958 kb on - strand, within EX31_RS05505at 253.958 kb on - strand, within EX31_RS05505at 253.958 kb on - strand, within EX31_RS05505at 253.996 kb on + strandat 253.997 kb on - strandat 253.997 kb on - strandat 254.047 kb on - strandat 254.047 kb on - strandat 254.093 kb on + strandat 254.094 kb on - strandat 254.110 kb on - strandat 254.130 kb on - strandat 254.140 kb on + strandat 254.140 kb on + strandat 254.140 kb on + strandat 254.140 kb on + strandat 254.140 kb on + strandat 254.140 kb on + strandat 254.140 kb on + strandat 254.141 kb on - strandat 254.141 kb on - strandat 254.141 kb on - strandat 254.169 kb on + strandat 254.170 kb on - strandat 254.205 kb on - strand, within EX31_RS05510at 254.205 kb on - strand, within EX31_RS05510at 254.296 kb on - strand, within EX31_RS05510at 254.296 kb on - strand, within EX31_RS05510at 254.370 kb on + strand, within EX31_RS05510at 254.405 kb on + strand, within EX31_RS05510at 254.405 kb on + strand, within EX31_RS05510at 254.405 kb on + strand, within EX31_RS05510at 254.405 kb on + strand, within EX31_RS05510at 254.405 kb on + strand, within EX31_RS05510at 254.405 kb on + strand, within EX31_RS05510at 254.405 kb on + strand, within EX31_RS05510at 254.406 kb on - strand, within EX31_RS05510at 254.406 kb on - strand, within EX31_RS05510at 254.406 kb on - strand, within EX31_RS05510at 254.406 kb on - strand, within EX31_RS05510at 254.406 kb on - strand, within EX31_RS05510at 254.406 kb on - strand, within EX31_RS05510at 254.406 kb on - strand, within EX31_RS05510at 254.406 kb on - strand, within EX31_RS05510at 254.406 kb on - strand, within EX31_RS05510at 254.406 kb on - strand, within EX31_RS05510at 254.445 kb on + strand, within EX31_RS05510at 254.445 kb on + strand, within EX31_RS05510at 254.446 kb on - strand, within EX31_RS05510at 254.446 kb on - strand, within EX31_RS05510at 254.480 kb on - strand, within EX31_RS05510at 254.559 kb on + strand, within EX31_RS05510at 254.559 kb on + strand, within EX31_RS05510at 254.560 kb on - strand, within EX31_RS05510at 254.560 kb on - strand, within EX31_RS05510at 254.632 kb on - strand, within EX31_RS05510at 254.632 kb on - strand, within EX31_RS05510at 254.632 kb on - strand, within EX31_RS05510at 254.677 kb on + strand, within EX31_RS05510at 254.690 kb on + strand, within EX31_RS05510at 254.833 kb on + strand, within EX31_RS05510at 254.907 kb on - strand, within EX31_RS05510at 254.907 kb on - strand, within EX31_RS05510at 254.915 kb on + strand, within EX31_RS05510at 254.915 kb on + strand, within EX31_RS05510at 254.915 kb on + strand, within EX31_RS05510at 254.916 kb on - strand, within EX31_RS05510at 254.916 kb on - strand, within EX31_RS05510at 254.916 kb on - strand, within EX31_RS05510at 254.924 kb on + strand, within EX31_RS05510at 254.946 kb on + strand, within EX31_RS05510at 254.946 kb on + strand, within EX31_RS05510at 255.022 kb on + strandat 255.023 kb on - strandat 255.023 kb on - strandat 255.031 kb on + strandat 255.031 kb on + strandat 255.031 kb on + strandat 255.031 kb on + strandat 255.031 kb on + strandat 255.031 kb on + strandat 255.032 kb on - strandat 255.032 kb on - strandat 255.032 kb on - strandat 255.032 kb on - strandat 255.032 kb on - strandat 255.032 kb on - strandat 255.032 kb on - strandat 255.054 kb on + strandat 255.054 kb on + strandat 255.054 kb on + strandat 255.054 kb on + strandat 255.054 kb on + strandat 255.054 kb on + strandat 255.054 kb on + strandat 255.054 kb on + strandat 255.055 kb on - strandat 255.055 kb on - strandat 255.076 kb on - strandat 255.076 kb on - strandat 255.079 kb on + strandat 255.079 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
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252,226 + +1.5
252,246 + EX31_RS05500 0.11 -0.7
252,246 + EX31_RS05500 0.11 -0.2
252,247 - EX31_RS05500 0.11 -1.6
252,277 + EX31_RS05500 0.14 +0.4
252,288 + EX31_RS05500 0.15 -0.6
252,288 + EX31_RS05500 0.15 -0.3
252,288 + EX31_RS05500 0.15 -0.9
252,288 + EX31_RS05500 0.15 +0.1
252,288 + EX31_RS05500 0.15 -0.1
252,288 + EX31_RS05500 0.15 -1.3
252,288 + EX31_RS05500 0.15 +0.5
252,288 + EX31_RS05500 0.15 -0.0
252,288 + EX31_RS05500 0.15 +0.1
252,288 + EX31_RS05500 0.15 -1.2
252,288 + EX31_RS05500 0.15 -0.1
252,288 + EX31_RS05500 0.15 -0.0
252,289 - EX31_RS05500 0.15 +0.2
252,289 - EX31_RS05500 0.15 -0.7
252,289 - EX31_RS05500 0.15 -0.7
252,289 - EX31_RS05500 0.15 +0.9
252,331 + EX31_RS05500 0.19 +1.0
252,332 - EX31_RS05500 0.20 +0.8
252,376 - EX31_RS05500 0.24 +0.4
252,376 - EX31_RS05500 0.24 -0.4
252,376 - EX31_RS05500 0.24 -0.2
252,425 + EX31_RS05500 0.29 +0.7
252,426 - EX31_RS05500 0.29 -0.2
252,426 - EX31_RS05500 0.29 +0.4
252,426 - EX31_RS05500 0.29 -0.3
252,426 - EX31_RS05500 0.29 +0.1
252,438 + EX31_RS05500 0.30 +0.5
252,438 + EX31_RS05500 0.30 -0.4
252,438 + EX31_RS05500 0.30 +0.0
252,438 + EX31_RS05500 0.30 +0.2
252,438 + EX31_RS05500 0.30 -0.4
252,438 + EX31_RS05500 0.30 +0.1
252,439 - EX31_RS05500 0.30 -0.1
252,439 - EX31_RS05500 0.30 +0.9
252,439 - EX31_RS05500 0.30 +0.0
252,439 - EX31_RS05500 0.30 +2.3
252,439 - EX31_RS05500 0.30 +0.8
252,439 - EX31_RS05500 0.30 -0.1
252,448 + EX31_RS05500 0.31 -1.4
252,448 + EX31_RS05500 0.31 +0.9
252,449 - EX31_RS05500 0.31 -0.5
252,449 - EX31_RS05500 0.31 +0.4
252,599 + EX31_RS05500 0.46 +0.9
252,599 + EX31_RS05500 0.46 +0.1
252,600 - EX31_RS05500 0.46 -0.1
252,672 + EX31_RS05500 0.53 +0.3
252,672 + EX31_RS05500 0.53 -1.1
252,673 - EX31_RS05500 0.53 -0.5
252,784 + EX31_RS05500 0.64 -1.1
252,804 + EX31_RS05500 0.66 +0.1
252,804 + EX31_RS05500 0.66 -0.2
252,804 + EX31_RS05500 0.66 +0.1
252,805 - EX31_RS05500 0.66 +0.5
252,901 + EX31_RS05500 0.75 +0.2
253,038 + EX31_RS05500 0.88 -1.0
253,038 + EX31_RS05500 0.88 -0.9
253,039 - EX31_RS05500 0.88 -0.0
253,039 - EX31_RS05500 0.88 -0.1
253,046 - EX31_RS05500 0.89 -0.5
253,052 + EX31_RS05500 0.90 -1.2
253,052 + EX31_RS05500 0.90 +0.4
253,099 + +0.5
253,175 + +0.2
253,175 + +0.5
253,175 + -0.0
253,175 + -0.6
253,175 + +0.8
253,175 + -2.0
253,176 - +0.8
253,176 - -0.0
253,176 - +0.2
253,176 - -0.2
253,176 - -0.7
253,176 - +0.4
253,176 - +0.4
253,176 - -0.7
253,220 + +1.0
253,221 - +0.5
253,221 - -0.7
253,293 + EX31_RS05505 0.14 -0.0
253,293 + EX31_RS05505 0.14 +0.6
253,294 - EX31_RS05505 0.14 -0.2
253,430 + EX31_RS05505 0.29 -0.3
253,431 - EX31_RS05505 0.29 -1.0
253,431 - EX31_RS05505 0.29 -0.5
253,431 - EX31_RS05505 0.29 -0.9
253,431 - EX31_RS05505 0.29 -0.0
253,431 - EX31_RS05505 0.29 -0.0
253,431 - EX31_RS05505 0.29 +0.8
253,435 - EX31_RS05505 0.29 -0.1
253,435 - EX31_RS05505 0.29 -0.2
253,439 + EX31_RS05505 0.30 -1.3
253,440 - EX31_RS05505 0.30 +0.4
253,440 - EX31_RS05505 0.30 -0.6
253,440 - EX31_RS05505 0.30 -0.5
253,440 - EX31_RS05505 0.30 -2.0
253,495 + EX31_RS05505 0.36 +0.3
253,496 - EX31_RS05505 0.36 +1.1
253,496 - EX31_RS05505 0.36 -0.1
253,543 + EX31_RS05505 0.41 +0.1
253,543 + EX31_RS05505 0.41 -0.2
253,543 + EX31_RS05505 0.41 -0.4
253,543 + EX31_RS05505 0.41 +1.3
253,543 + EX31_RS05505 0.41 +0.8
253,544 - EX31_RS05505 0.41 +1.1
253,544 - EX31_RS05505 0.41 -0.7
253,544 - EX31_RS05505 0.41 -0.1
253,544 - EX31_RS05505 0.41 -0.3
253,544 - EX31_RS05505 0.41 +0.6
253,544 - EX31_RS05505 0.41 -0.1
253,544 - EX31_RS05505 0.41 -0.4
253,544 - EX31_RS05505 0.41 +0.3
253,544 - EX31_RS05505 0.41 +0.3
253,544 - EX31_RS05505 0.41 -0.4
253,544 - EX31_RS05505 0.41 -0.7
253,652 + EX31_RS05505 0.53 -0.4
253,693 + EX31_RS05505 0.57 -0.1
253,694 - EX31_RS05505 0.58 +0.1
253,694 - EX31_RS05505 0.58 -1.0
253,740 + EX31_RS05505 0.63 +0.6
253,741 - EX31_RS05505 0.63 -0.3
253,783 + EX31_RS05505 0.67 +0.2
253,783 + EX31_RS05505 0.67 +0.2
253,783 + EX31_RS05505 0.67 +0.5
253,784 - EX31_RS05505 0.67 -1.0
253,803 - EX31_RS05505 0.70 -0.8
253,949 + EX31_RS05505 0.85 +0.3
253,949 + EX31_RS05505 0.85 -1.2
253,949 + EX31_RS05505 0.85 -1.3
253,949 + EX31_RS05505 0.85 +0.2
253,949 + EX31_RS05505 0.85 -0.6
253,950 - EX31_RS05505 0.86 -0.0
253,950 - EX31_RS05505 0.86 -0.4
253,950 - EX31_RS05505 0.86 -0.4
253,950 - EX31_RS05505 0.86 +0.1
253,957 + EX31_RS05505 0.86 +1.1
253,957 + EX31_RS05505 0.86 -0.3
253,957 + EX31_RS05505 0.86 +3.3
253,957 + EX31_RS05505 0.86 +0.0
253,958 - EX31_RS05505 0.86 +0.8
253,958 - EX31_RS05505 0.86 -0.4
253,958 - EX31_RS05505 0.86 +0.8
253,958 - EX31_RS05505 0.86 +0.2
253,958 - EX31_RS05505 0.86 +0.2
253,996 + -0.9
253,997 - -0.9
253,997 - +0.1
254,047 - +1.4
254,047 - -0.6
254,093 + +1.8
254,094 - -0.2
254,110 - -1.1
254,130 - -0.4
254,140 + -0.8
254,140 + -0.8
254,140 + -1.3
254,140 + -0.2
254,140 + -0.5
254,140 + -0.7
254,140 + +0.7
254,141 - -0.4
254,141 - +0.6
254,141 - -0.9
254,169 + +0.5
254,170 - +0.4
254,205 - EX31_RS05510 0.11 +0.2
254,205 - EX31_RS05510 0.11 +0.8
254,296 - EX31_RS05510 0.20 +0.1
254,296 - EX31_RS05510 0.20 +0.7
254,370 + EX31_RS05510 0.27 -1.9
254,405 + EX31_RS05510 0.31 +2.1
254,405 + EX31_RS05510 0.31 -0.1
254,405 + EX31_RS05510 0.31 -0.8
254,405 + EX31_RS05510 0.31 +0.2
254,405 + EX31_RS05510 0.31 +0.4
254,405 + EX31_RS05510 0.31 -1.5
254,405 + EX31_RS05510 0.31 -0.1
254,406 - EX31_RS05510 0.31 -0.0
254,406 - EX31_RS05510 0.31 +0.2
254,406 - EX31_RS05510 0.31 -0.3
254,406 - EX31_RS05510 0.31 +0.2
254,406 - EX31_RS05510 0.31 -0.5
254,406 - EX31_RS05510 0.31 -0.1
254,406 - EX31_RS05510 0.31 +2.3
254,406 - EX31_RS05510 0.31 -2.7
254,406 - EX31_RS05510 0.31 -1.1
254,406 - EX31_RS05510 0.31 -0.7
254,445 + EX31_RS05510 0.35 -0.8
254,445 + EX31_RS05510 0.35 -0.1
254,446 - EX31_RS05510 0.35 +0.4
254,446 - EX31_RS05510 0.35 -0.8
254,480 - EX31_RS05510 0.38 -0.1
254,559 + EX31_RS05510 0.46 -0.1
254,559 + EX31_RS05510 0.46 -0.0
254,560 - EX31_RS05510 0.46 -0.2
254,560 - EX31_RS05510 0.46 -0.6
254,632 - EX31_RS05510 0.53 +1.0
254,632 - EX31_RS05510 0.53 -0.8
254,632 - EX31_RS05510 0.53 -0.4
254,677 + EX31_RS05510 0.57 -0.9
254,690 + EX31_RS05510 0.59 -0.1
254,833 + EX31_RS05510 0.73 +0.4
254,907 - EX31_RS05510 0.80 +0.4
254,907 - EX31_RS05510 0.80 +0.0
254,915 + EX31_RS05510 0.81 -0.9
254,915 + EX31_RS05510 0.81 +1.0
254,915 + EX31_RS05510 0.81 +0.5
254,916 - EX31_RS05510 0.81 -0.3
254,916 - EX31_RS05510 0.81 -0.9
254,916 - EX31_RS05510 0.81 +0.6
254,924 + EX31_RS05510 0.82 -0.8
254,946 + EX31_RS05510 0.84 +0.0
254,946 + EX31_RS05510 0.84 -0.9
255,022 + +0.5
255,023 - +0.0
255,023 - -0.3
255,031 + +0.1
255,031 + -0.6
255,031 + -0.3
255,031 + -0.5
255,031 + -0.6
255,031 + +0.6
255,032 - -1.4
255,032 - -0.1
255,032 - +0.4
255,032 - -0.1
255,032 - +0.1
255,032 - -0.3
255,032 - +1.0
255,054 + -0.1
255,054 + -0.2
255,054 + -0.7
255,054 + +1.0
255,054 + +0.7
255,054 + -0.8
255,054 + +0.0
255,054 + +1.1
255,055 - -0.2
255,055 - -0.4
255,076 - +0.9
255,076 - -0.3
255,079 + +1.2
255,079 + -0.2

Or see this region's nucleotide sequence