Strain Fitness in Rahnella sp. WP5 around EX31_RS01425

Experiment: L-Glutamine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01420 and EX31_RS01425 are separated by 192 nucleotidesEX31_RS01425 and EX31_RS01430 are separated by 64 nucleotidesEX31_RS01430 and EX31_RS01435 are separated by 113 nucleotides EX31_RS01420: EX31_RS01420 - virulence factor, at 318,137 to 320,512 _RS01420 EX31_RS01425: EX31_RS01425 - class I fructose-bisphosphate aldolase, at 320,705 to 321,754 _RS01425 EX31_RS01430: EX31_RS01430 - type 1 glutamine amidotransferase domain-containing protein, at 321,819 to 322,499 _RS01430 EX31_RS01435: EX31_RS01435 - TetR/AcrR family transcriptional regulator, at 322,613 to 323,224 _RS01435 Position (kb) 320 321 322Strain fitness (log2 ratio) -2 -1 0 1 2at 319.804 kb on + strand, within EX31_RS01420at 319.804 kb on + strand, within EX31_RS01420at 319.805 kb on - strand, within EX31_RS01420at 319.805 kb on - strand, within EX31_RS01420at 319.805 kb on - strand, within EX31_RS01420at 319.882 kb on + strand, within EX31_RS01420at 319.896 kb on + strand, within EX31_RS01420at 320.132 kb on - strand, within EX31_RS01420at 320.272 kb on + strand, within EX31_RS01420at 320.273 kb on - strand, within EX31_RS01420at 320.379 kb on - strandat 320.492 kb on - strandat 320.492 kb on - strandat 320.510 kb on + strandat 320.510 kb on + strandat 320.511 kb on - strandat 320.514 kb on - strandat 320.554 kb on + strandat 320.596 kb on - strandat 320.636 kb on - strandat 320.637 kb on + strandat 320.637 kb on + strandat 320.637 kb on + strandat 320.638 kb on - strandat 320.638 kb on - strandat 320.638 kb on - strandat 320.641 kb on + strandat 320.641 kb on + strandat 320.642 kb on - strandat 320.658 kb on - strandat 320.658 kb on - strandat 320.704 kb on + strandat 320.705 kb on - strandat 320.714 kb on - strandat 320.719 kb on + strandat 320.720 kb on - strandat 320.787 kb on + strandat 320.787 kb on + strandat 320.787 kb on + strandat 320.788 kb on - strandat 320.788 kb on - strandat 320.789 kb on + strandat 320.789 kb on + strandat 320.789 kb on + strandat 320.789 kb on + strandat 320.789 kb on + strandat 320.790 kb on - strandat 320.790 kb on - strandat 320.790 kb on - strandat 320.873 kb on + strand, within EX31_RS01425at 320.874 kb on - strand, within EX31_RS01425at 320.975 kb on + strand, within EX31_RS01425at 321.126 kb on - strand, within EX31_RS01425at 321.126 kb on - strand, within EX31_RS01425at 321.137 kb on + strand, within EX31_RS01425at 321.137 kb on + strand, within EX31_RS01425at 321.137 kb on + strand, within EX31_RS01425at 321.138 kb on - strand, within EX31_RS01425at 321.138 kb on - strand, within EX31_RS01425at 321.153 kb on - strand, within EX31_RS01425at 321.153 kb on - strand, within EX31_RS01425at 321.240 kb on + strand, within EX31_RS01425at 321.241 kb on - strand, within EX31_RS01425at 321.241 kb on - strand, within EX31_RS01425at 321.241 kb on - strand, within EX31_RS01425at 321.305 kb on + strand, within EX31_RS01425at 321.434 kb on - strand, within EX31_RS01425at 321.434 kb on - strand, within EX31_RS01425at 321.542 kb on + strand, within EX31_RS01425at 321.542 kb on + strand, within EX31_RS01425at 321.543 kb on - strand, within EX31_RS01425at 321.543 kb on - strand, within EX31_RS01425at 321.543 kb on - strand, within EX31_RS01425at 321.565 kb on + strand, within EX31_RS01425at 321.614 kb on - strand, within EX31_RS01425at 321.726 kb on - strandat 321.726 kb on - strandat 321.771 kb on + strandat 321.807 kb on + strandat 321.840 kb on + strandat 321.841 kb on - strandat 321.906 kb on + strand, within EX31_RS01430at 321.907 kb on - strand, within EX31_RS01430at 321.910 kb on + strand, within EX31_RS01430at 321.911 kb on - strand, within EX31_RS01430at 321.911 kb on - strand, within EX31_RS01430at 321.911 kb on - strand, within EX31_RS01430at 321.911 kb on - strand, within EX31_RS01430at 321.911 kb on - strand, within EX31_RS01430at 321.911 kb on - strand, within EX31_RS01430at 321.984 kb on + strand, within EX31_RS01430at 322.047 kb on + strand, within EX31_RS01430at 322.163 kb on + strand, within EX31_RS01430at 322.164 kb on - strand, within EX31_RS01430at 322.398 kb on - strand, within EX31_RS01430at 322.406 kb on - strand, within EX31_RS01430at 322.409 kb on - strand, within EX31_RS01430at 322.409 kb on - strand, within EX31_RS01430at 322.506 kb on + strandat 322.614 kb on + strandat 322.615 kb on - strandat 322.631 kb on - strandat 322.673 kb on - strandat 322.673 kb on - strandat 322.673 kb on - strandat 322.673 kb on - strandat 322.676 kb on - strand, within EX31_RS01435

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
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319,804 + EX31_RS01420 0.70 -0.6
319,804 + EX31_RS01420 0.70 -0.0
319,805 - EX31_RS01420 0.70 +0.1
319,805 - EX31_RS01420 0.70 -2.2
319,805 - EX31_RS01420 0.70 +0.2
319,882 + EX31_RS01420 0.73 +1.4
319,896 + EX31_RS01420 0.74 +0.0
320,132 - EX31_RS01420 0.84 -1.0
320,272 + EX31_RS01420 0.90 +1.0
320,273 - EX31_RS01420 0.90 -1.0
320,379 - +1.2
320,492 - -1.9
320,492 - +1.6
320,510 + -0.3
320,510 + -0.1
320,511 - +1.8
320,514 - -1.7
320,554 + -1.2
320,596 - +1.0
320,636 - +0.5
320,637 + -0.3
320,637 + -2.1
320,637 + -1.1
320,638 - -2.5
320,638 - +0.0
320,638 - +0.2
320,641 + -0.6
320,641 + -0.4
320,642 - -1.7
320,658 - -0.8
320,658 - +0.2
320,704 + -0.8
320,705 - -2.7
320,714 - -1.9
320,719 + -0.6
320,720 - +0.4
320,787 + -1.3
320,787 + +1.2
320,787 + -0.2
320,788 - +2.4
320,788 - +1.4
320,789 + -0.3
320,789 + +1.3
320,789 + +1.6
320,789 + -0.8
320,789 + -0.3
320,790 - +1.0
320,790 - +0.6
320,790 - -1.3
320,873 + EX31_RS01425 0.16 +0.1
320,874 - EX31_RS01425 0.16 -0.8
320,975 + EX31_RS01425 0.26 -0.3
321,126 - EX31_RS01425 0.40 +1.1
321,126 - EX31_RS01425 0.40 +0.6
321,137 + EX31_RS01425 0.41 -1.0
321,137 + EX31_RS01425 0.41 -0.1
321,137 + EX31_RS01425 0.41 +2.2
321,138 - EX31_RS01425 0.41 -0.2
321,138 - EX31_RS01425 0.41 +2.3
321,153 - EX31_RS01425 0.43 +0.9
321,153 - EX31_RS01425 0.43 -0.2
321,240 + EX31_RS01425 0.51 -0.3
321,241 - EX31_RS01425 0.51 -1.0
321,241 - EX31_RS01425 0.51 +0.9
321,241 - EX31_RS01425 0.51 +2.7
321,305 + EX31_RS01425 0.57 -0.1
321,434 - EX31_RS01425 0.69 +0.6
321,434 - EX31_RS01425 0.69 +1.3
321,542 + EX31_RS01425 0.80 +0.3
321,542 + EX31_RS01425 0.80 +0.6
321,543 - EX31_RS01425 0.80 -0.3
321,543 - EX31_RS01425 0.80 -0.1
321,543 - EX31_RS01425 0.80 +0.9
321,565 + EX31_RS01425 0.82 -0.6
321,614 - EX31_RS01425 0.87 +0.8
321,726 - +1.0
321,726 - +0.3
321,771 + -0.1
321,807 + -1.2
321,840 + +1.3
321,841 - +1.0
321,906 + EX31_RS01430 0.13 +1.0
321,907 - EX31_RS01430 0.13 -0.1
321,910 + EX31_RS01430 0.13 +0.0
321,911 - EX31_RS01430 0.14 +1.2
321,911 - EX31_RS01430 0.14 +0.9
321,911 - EX31_RS01430 0.14 +2.0
321,911 - EX31_RS01430 0.14 +0.0
321,911 - EX31_RS01430 0.14 -0.1
321,911 - EX31_RS01430 0.14 -0.0
321,984 + EX31_RS01430 0.24 +1.4
322,047 + EX31_RS01430 0.33 +0.5
322,163 + EX31_RS01430 0.51 -0.3
322,164 - EX31_RS01430 0.51 -0.7
322,398 - EX31_RS01430 0.85 +0.7
322,406 - EX31_RS01430 0.86 -0.3
322,409 - EX31_RS01430 0.87 -0.2
322,409 - EX31_RS01430 0.87 +0.6
322,506 + +1.3
322,614 + +0.4
322,615 - -1.0
322,631 - -0.9
322,673 - -1.5
322,673 - -0.2
322,673 - +0.1
322,673 - +0.1
322,676 - EX31_RS01435 0.10 -0.1

Or see this region's nucleotide sequence