Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01941

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01940 and CCNA_01941 overlap by 1 nucleotidesCCNA_01941 and CCNA_01942 overlap by 4 nucleotidesCCNA_01942 and CCNA_01943 are separated by 178 nucleotides CCNA_01940: CCNA_01940 - ABC transporter-associated protein SufB, at 2,082,316 to 2,083,785 _01940 CCNA_01941: CCNA_01941 - cysteine desulfhydrase/Selenocysteine lyase, at 2,083,785 to 2,084,924 _01941 CCNA_01942: CCNA_01942 - Rrf2 family protein, at 2,084,921 to 2,085,397 _01942 CCNA_01943: CCNA_01943 - alpha/beta hydrolase family protein, at 2,085,576 to 2,086,226 _01943 Position (kb) 2083 2084 2085Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2083.795 kb on + strandat 2084.925 kb on - strandat 2084.994 kb on - strand, within CCNA_01942at 2084.997 kb on + strand, within CCNA_01942at 2085.057 kb on + strand, within CCNA_01942at 2085.072 kb on + strand, within CCNA_01942at 2085.080 kb on - strand, within CCNA_01942at 2085.092 kb on + strand, within CCNA_01942at 2085.100 kb on - strand, within CCNA_01942at 2085.101 kb on - strand, within CCNA_01942at 2085.101 kb on - strand, within CCNA_01942at 2085.101 kb on - strand, within CCNA_01942at 2085.101 kb on - strand, within CCNA_01942at 2085.167 kb on + strand, within CCNA_01942at 2085.175 kb on - strand, within CCNA_01942at 2085.182 kb on - strand, within CCNA_01942at 2085.232 kb on - strand, within CCNA_01942at 2085.273 kb on + strand, within CCNA_01942at 2085.335 kb on - strand, within CCNA_01942at 2085.339 kb on + strand, within CCNA_01942at 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.407 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.451 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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2,083,795 + +2.8
2,084,925 - +2.0
2,084,994 - CCNA_01942 0.15 -1.6
2,084,997 + CCNA_01942 0.16 +0.1
2,085,057 + CCNA_01942 0.29 -2.4
2,085,072 + CCNA_01942 0.32 +0.5
2,085,080 - CCNA_01942 0.33 -0.8
2,085,092 + CCNA_01942 0.36 -1.3
2,085,100 - CCNA_01942 0.38 +0.3
2,085,101 - CCNA_01942 0.38 +2.0
2,085,101 - CCNA_01942 0.38 +1.9
2,085,101 - CCNA_01942 0.38 +2.4
2,085,101 - CCNA_01942 0.38 +2.5
2,085,167 + CCNA_01942 0.52 +1.2
2,085,175 - CCNA_01942 0.53 +2.4
2,085,182 - CCNA_01942 0.55 +0.1
2,085,232 - CCNA_01942 0.65 +2.9
2,085,273 + CCNA_01942 0.74 +0.5
2,085,335 - CCNA_01942 0.87 +0.1
2,085,339 + CCNA_01942 0.88 -0.2
2,085,400 + +0.4
2,085,400 + +2.3
2,085,400 + +0.1
2,085,400 + -1.2
2,085,400 + +1.0
2,085,400 + +0.1
2,085,400 + +0.9
2,085,400 + -0.9
2,085,400 + +2.4
2,085,400 + -1.5
2,085,407 - +1.4
2,085,408 - +1.4
2,085,408 - +0.2
2,085,408 - -0.7
2,085,408 - +0.5
2,085,408 - +0.9
2,085,408 - +1.4
2,085,408 - +1.5
2,085,408 - +1.7
2,085,408 - +0.7
2,085,408 - +0.8
2,085,408 - +0.5
2,085,408 - +0.8
2,085,408 - +0.7
2,085,408 - +0.7
2,085,408 - +0.7
2,085,451 - +2.2

Or see this region's nucleotide sequence