Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01644 and CCNA_01645 are separated by 114 nucleotides CCNA_01645 and CCNA_01646 overlap by 4 nucleotides CCNA_01646 and CCNA_01647 overlap by 4 nucleotides
CCNA_01644: CCNA_01644 - chemotaxis motB protein, at 1,764,656 to 1,765,552
_01644
CCNA_01645: CCNA_01645 - 3-hydroxyisobutyrate dehydrogenase, at 1,765,667 to 1,766,527
_01645
CCNA_01646: CCNA_01646 - dethiobiotin synthetase, at 1,766,524 to 1,767,183
_01646
CCNA_01647: CCNA_01647 - 8-amino-7-oxononanoate synthase, at 1,767,180 to 1,768,334
_01647
Position (kb)
1766
1767
1768 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1765.546 kb on + strand at 1765.566 kb on + strand at 1765.589 kb on + strand at 1765.597 kb on - strand at 1765.638 kb on + strand at 1765.701 kb on + strand at 1765.720 kb on + strand at 1765.720 kb on + strand at 1765.720 kb on + strand at 1765.728 kb on - strand at 1765.733 kb on + strand at 1765.761 kb on + strand, within CCNA_01645 at 1765.772 kb on + strand, within CCNA_01645 at 1765.819 kb on + strand, within CCNA_01645 at 1766.002 kb on - strand, within CCNA_01645 at 1766.015 kb on + strand, within CCNA_01645 at 1766.040 kb on - strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.119 kb on + strand, within CCNA_01645 at 1766.127 kb on - strand, within CCNA_01645 at 1766.127 kb on - strand, within CCNA_01645 at 1766.127 kb on - strand, within CCNA_01645 at 1766.127 kb on - strand, within CCNA_01645 at 1766.201 kb on + strand, within CCNA_01645 at 1766.209 kb on - strand, within CCNA_01645 at 1766.209 kb on - strand, within CCNA_01645 at 1766.224 kb on + strand, within CCNA_01645 at 1766.245 kb on + strand, within CCNA_01645 at 1766.253 kb on - strand, within CCNA_01645 at 1766.288 kb on + strand, within CCNA_01645 at 1766.296 kb on - strand, within CCNA_01645 at 1766.311 kb on - strand, within CCNA_01645 at 1766.327 kb on + strand, within CCNA_01645 at 1766.375 kb on + strand, within CCNA_01645 at 1766.376 kb on - strand, within CCNA_01645 at 1766.387 kb on + strand, within CCNA_01645 at 1766.387 kb on + strand, within CCNA_01645 at 1766.387 kb on + strand, within CCNA_01645 at 1766.388 kb on + strand, within CCNA_01645 at 1766.395 kb on - strand, within CCNA_01645 at 1766.432 kb on + strand, within CCNA_01645 at 1766.440 kb on - strand, within CCNA_01645 at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.446 kb on + strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.454 kb on - strand at 1766.458 kb on + strand at 1766.464 kb on + strand at 1766.467 kb on - strand at 1766.472 kb on - strand at 1766.490 kb on + strand at 1766.490 kb on + strand at 1766.490 kb on + strand at 1766.498 kb on - strand at 1766.498 kb on - strand at 1766.504 kb on - strand at 1766.528 kb on + strand at 1766.536 kb on - strand at 1766.536 kb on - strand at 1766.536 kb on - strand at 1766.570 kb on - strand at 1766.617 kb on - strand, within CCNA_01646 at 1766.619 kb on + strand, within CCNA_01646 at 1766.619 kb on + strand, within CCNA_01646 at 1766.626 kb on + strand, within CCNA_01646 at 1766.627 kb on - strand, within CCNA_01646 at 1766.652 kb on + strand, within CCNA_01646 at 1766.654 kb on - strand, within CCNA_01646 at 1766.675 kb on + strand, within CCNA_01646 at 1766.685 kb on + strand, within CCNA_01646 at 1766.685 kb on + strand, within CCNA_01646 at 1766.688 kb on - strand, within CCNA_01646 at 1766.704 kb on - strand, within CCNA_01646 at 1766.710 kb on - strand, within CCNA_01646 at 1766.719 kb on - strand, within CCNA_01646 at 1766.732 kb on - strand, within CCNA_01646 at 1766.744 kb on - strand, within CCNA_01646 at 1766.769 kb on + strand, within CCNA_01646 at 1766.769 kb on + strand, within CCNA_01646 at 1766.777 kb on - strand, within CCNA_01646 at 1766.780 kb on + strand, within CCNA_01646 at 1766.788 kb on - strand, within CCNA_01646 at 1766.795 kb on - strand, within CCNA_01646 at 1766.796 kb on - strand, within CCNA_01646 at 1766.850 kb on - strand, within CCNA_01646 at 1766.853 kb on + strand, within CCNA_01646 at 1766.896 kb on - strand, within CCNA_01646 at 1766.903 kb on + strand, within CCNA_01646 at 1766.905 kb on + strand, within CCNA_01646 at 1766.921 kb on + strand, within CCNA_01646 at 1766.936 kb on + strand, within CCNA_01646 at 1767.036 kb on + strand, within CCNA_01646 at 1767.036 kb on + strand, within CCNA_01646 at 1767.036 kb on + strand, within CCNA_01646 at 1767.044 kb on - strand, within CCNA_01646 at 1767.051 kb on + strand, within CCNA_01646 at 1767.072 kb on - strand, within CCNA_01646 at 1767.110 kb on + strand, within CCNA_01646 at 1767.118 kb on - strand at 1767.120 kb on - strand at 1767.194 kb on + strand at 1767.282 kb on + strand at 1767.290 kb on - strand at 1767.290 kb on - strand at 1767.290 kb on - strand at 1767.377 kb on - strand, within CCNA_01647 at 1767.410 kb on + strand, within CCNA_01647 at 1767.418 kb on - strand, within CCNA_01647 at 1767.418 kb on - strand, within CCNA_01647 at 1767.418 kb on - strand, within CCNA_01647 at 1767.436 kb on + strand, within CCNA_01647 at 1767.519 kb on + strand, within CCNA_01647 at 1767.521 kb on - strand, within CCNA_01647 at 1767.521 kb on - strand, within CCNA_01647 at 1767.586 kb on - strand, within CCNA_01647 at 1767.617 kb on - strand, within CCNA_01647 at 1767.663 kb on - strand, within CCNA_01647 at 1767.663 kb on - strand, within CCNA_01647 at 1767.682 kb on - strand, within CCNA_01647 at 1767.909 kb on - strand, within CCNA_01647 at 1767.936 kb on + strand, within CCNA_01647 at 1767.943 kb on - strand, within CCNA_01647 at 1767.977 kb on + strand, within CCNA_01647 at 1768.007 kb on + strand, within CCNA_01647 at 1768.047 kb on - strand, within CCNA_01647 at 1768.128 kb on + strand, within CCNA_01647 at 1768.136 kb on - strand, within CCNA_01647 at 1768.153 kb on + strand, within CCNA_01647 at 1768.178 kb on + strand, within CCNA_01647
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 1,765,546 + +3.3 1,765,566 + -1.7 1,765,589 + -2.4 1,765,597 - +0.9 1,765,638 + -0.4 1,765,701 + -1.6 1,765,720 + -0.1 1,765,720 + -1.9 1,765,720 + -0.8 1,765,728 - -2.7 1,765,733 + -0.7 1,765,761 + CCNA_01645 0.11 +0.6 1,765,772 + CCNA_01645 0.12 +1.8 1,765,819 + CCNA_01645 0.18 +0.9 1,766,002 - CCNA_01645 0.39 +1.8 1,766,015 + CCNA_01645 0.40 -0.0 1,766,040 - CCNA_01645 0.43 -2.8 1,766,119 + CCNA_01645 0.52 +1.2 1,766,119 + CCNA_01645 0.52 +0.7 1,766,119 + CCNA_01645 0.52 +3.8 1,766,119 + CCNA_01645 0.52 +0.9 1,766,119 + CCNA_01645 0.52 +0.9 1,766,119 + CCNA_01645 0.52 +0.6 1,766,119 + CCNA_01645 0.52 +0.8 1,766,119 + CCNA_01645 0.52 +0.8 1,766,127 - CCNA_01645 0.53 -0.2 1,766,127 - CCNA_01645 0.53 +1.2 1,766,127 - CCNA_01645 0.53 +0.5 1,766,127 - CCNA_01645 0.53 -0.1 1,766,201 + CCNA_01645 0.62 +1.6 1,766,209 - CCNA_01645 0.63 +0.3 1,766,209 - CCNA_01645 0.63 +0.7 1,766,224 + CCNA_01645 0.65 +1.0 1,766,245 + CCNA_01645 0.67 -1.3 1,766,253 - CCNA_01645 0.68 -1.7 1,766,288 + CCNA_01645 0.72 +0.8 1,766,296 - CCNA_01645 0.73 -2.5 1,766,311 - CCNA_01645 0.75 -1.3 1,766,327 + CCNA_01645 0.77 -0.4 1,766,375 + CCNA_01645 0.82 -0.0 1,766,376 - CCNA_01645 0.82 -0.7 1,766,387 + CCNA_01645 0.84 +0.7 1,766,387 + CCNA_01645 0.84 +0.8 1,766,387 + CCNA_01645 0.84 -1.2 1,766,388 + CCNA_01645 0.84 +0.2 1,766,395 - CCNA_01645 0.85 -0.4 1,766,432 + CCNA_01645 0.89 +1.6 1,766,440 - CCNA_01645 0.90 -0.7 1,766,446 + +1.4 1,766,446 + +0.3 1,766,446 + +0.7 1,766,446 + -0.2 1,766,446 + +0.7 1,766,446 + +0.7 1,766,446 + +0.7 1,766,446 + +0.4 1,766,446 + +1.4 1,766,446 + +1.6 1,766,454 - +1.0 1,766,454 - +0.2 1,766,454 - +0.7 1,766,454 - +0.5 1,766,454 - +0.0 1,766,454 - +0.3 1,766,454 - +1.8 1,766,454 - +0.6 1,766,454 - +1.8 1,766,454 - +1.6 1,766,454 - +0.5 1,766,454 - -0.0 1,766,458 + +0.1 1,766,464 + +1.8 1,766,467 - +0.0 1,766,472 - +1.4 1,766,490 + +1.1 1,766,490 + +1.5 1,766,490 + -1.0 1,766,498 - +0.5 1,766,498 - -0.6 1,766,504 - +0.3 1,766,528 + -0.2 1,766,536 - +0.6 1,766,536 - -1.0 1,766,536 - -2.2 1,766,570 - -0.7 1,766,617 - CCNA_01646 0.14 +0.5 1,766,619 + CCNA_01646 0.14 +0.6 1,766,619 + CCNA_01646 0.14 -0.5 1,766,626 + CCNA_01646 0.15 -0.8 1,766,627 - CCNA_01646 0.16 -0.0 1,766,652 + CCNA_01646 0.19 -0.3 1,766,654 - CCNA_01646 0.20 -2.1 1,766,675 + CCNA_01646 0.23 -2.5 1,766,685 + CCNA_01646 0.24 +2.7 1,766,685 + CCNA_01646 0.24 +1.4 1,766,688 - CCNA_01646 0.25 -0.7 1,766,704 - CCNA_01646 0.27 +2.4 1,766,710 - CCNA_01646 0.28 +0.1 1,766,719 - CCNA_01646 0.30 -0.5 1,766,732 - CCNA_01646 0.32 -1.2 1,766,744 - CCNA_01646 0.33 -1.3 1,766,769 + CCNA_01646 0.37 -0.8 1,766,769 + CCNA_01646 0.37 -0.7 1,766,777 - CCNA_01646 0.38 +0.0 1,766,780 + CCNA_01646 0.39 -0.3 1,766,788 - CCNA_01646 0.40 +0.4 1,766,795 - CCNA_01646 0.41 -0.8 1,766,796 - CCNA_01646 0.41 -0.9 1,766,850 - CCNA_01646 0.49 +0.2 1,766,853 + CCNA_01646 0.50 -1.1 1,766,896 - CCNA_01646 0.56 -0.8 1,766,903 + CCNA_01646 0.57 -0.5 1,766,905 + CCNA_01646 0.58 -0.5 1,766,921 + CCNA_01646 0.60 -2.2 1,766,936 + CCNA_01646 0.62 -0.6 1,767,036 + CCNA_01646 0.78 -0.5 1,767,036 + CCNA_01646 0.78 -0.2 1,767,036 + CCNA_01646 0.78 +0.4 1,767,044 - CCNA_01646 0.79 -0.3 1,767,051 + CCNA_01646 0.80 -1.4 1,767,072 - CCNA_01646 0.83 +1.4 1,767,110 + CCNA_01646 0.89 -1.2 1,767,118 - -0.2 1,767,120 - +1.2 1,767,194 + -0.8 1,767,282 + +1.6 1,767,290 - -1.7 1,767,290 - -1.0 1,767,290 - -2.8 1,767,377 - CCNA_01647 0.17 -1.7 1,767,410 + CCNA_01647 0.20 -0.5 1,767,418 - CCNA_01647 0.21 +0.9 1,767,418 - CCNA_01647 0.21 -1.3 1,767,418 - CCNA_01647 0.21 +0.2 1,767,436 + CCNA_01647 0.22 -2.3 1,767,519 + CCNA_01647 0.29 -1.4 1,767,521 - CCNA_01647 0.30 -0.0 1,767,521 - CCNA_01647 0.30 -1.5 1,767,586 - CCNA_01647 0.35 -0.2 1,767,617 - CCNA_01647 0.38 -0.3 1,767,663 - CCNA_01647 0.42 -0.6 1,767,663 - CCNA_01647 0.42 -0.5 1,767,682 - CCNA_01647 0.43 +1.8 1,767,909 - CCNA_01647 0.63 -0.2 1,767,936 + CCNA_01647 0.65 -1.6 1,767,943 - CCNA_01647 0.66 +0.1 1,767,977 + CCNA_01647 0.69 +1.3 1,768,007 + CCNA_01647 0.72 +0.9 1,768,047 - CCNA_01647 0.75 +0.7 1,768,128 + CCNA_01647 0.82 -1.1 1,768,136 - CCNA_01647 0.83 -1.0 1,768,153 + CCNA_01647 0.84 -2.9 1,768,178 + CCNA_01647 0.86 -3.2
Or see this region's nucleotide sequence