Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01419 and CCNA_01420 are separated by 32 nucleotides CCNA_01420 and CCNA_01421 are separated by 65 nucleotides CCNA_01421 and CCNA_01422 overlap by 4 nucleotides CCNA_01422 and CCNA_01423 overlap by 41 nucleotides
CCNA_01419: CCNA_01419 - serine hydroxymethyltransferase, at 1,536,723 to 1,538,009
_01419
CCNA_01420: CCNA_01420 - NrdR family transcriptional regulator, at 1,538,042 to 1,538,515
_01420
CCNA_01421: CCNA_01421 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,538,581 to 1,539,045
_01421
CCNA_01422: CCNA_01422 - N utilization substance protein B NusB, at 1,539,042 to 1,539,491
_01422
CCNA_01423: CCNA_01423 - thiamine-monophosphate kinase, at 1,539,451 to 1,540,509
_01423
Position (kb)
1538
1539 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1538.032 kb on + strand at 1538.032 kb on + strand at 1538.095 kb on + strand, within CCNA_01420 at 1538.200 kb on + strand, within CCNA_01420 at 1538.261 kb on + strand, within CCNA_01420 at 1538.280 kb on + strand, within CCNA_01420 at 1538.331 kb on + strand, within CCNA_01420 at 1538.450 kb on + strand, within CCNA_01420 at 1538.467 kb on + strand, within CCNA_01420 at 1538.499 kb on + strand at 1538.509 kb on + strand at 1538.515 kb on - strand at 1538.515 kb on - strand at 1538.517 kb on - strand at 1538.523 kb on + strand at 1539.031 kb on + strand at 1539.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 1,538,032 + +1.8 1,538,032 + +2.2 1,538,095 + CCNA_01420 0.11 +3.1 1,538,200 + CCNA_01420 0.33 +2.9 1,538,261 + CCNA_01420 0.46 +3.0 1,538,280 + CCNA_01420 0.50 +2.5 1,538,331 + CCNA_01420 0.61 +2.4 1,538,450 + CCNA_01420 0.86 +3.1 1,538,467 + CCNA_01420 0.90 +3.4 1,538,499 + +1.6 1,538,509 + +1.2 1,538,515 - -1.4 1,538,515 - -0.4 1,538,517 - -1.3 1,538,523 + +0.7 1,539,031 + +2.1 1,539,044 - -1.5
Or see this region's nucleotide sequence