Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00933

Experiment: nitrate (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N)
1,007,651	+		CCNA_00931	0.67	+2.0
1,007,677	-		CCNA_00931	0.69	-0.9
1,007,682	-		CCNA_00931	0.69	-0.5
1,007,701	+		CCNA_00931	0.71	+1.7
1,007,706	+		CCNA_00931	0.71	+2.3
1,007,720	+		CCNA_00931	0.73	+2.1
1,007,748	-		CCNA_00931	0.75	-0.7
1,007,782	+		CCNA_00931	0.78	+3.4
1,007,790	-		CCNA_00931	0.78	-1.9
1,007,799	+		CCNA_00931	0.79	+1.5
1,007,804	+		CCNA_00931	0.80	+2.0
1,007,809	+		CCNA_00931	0.80	+1.7
1,007,817	-		CCNA_00931	0.81	-1.8
1,007,821	+		CCNA_00931	0.81	+3.0
1,007,883	+		CCNA_00931	0.86	+2.2
1,007,907	+		CCNA_00931	0.88	+2.2
1,007,920	+		CCNA_00931	0.89	+2.1
1,007,954	+				+2.5
1,007,973	+				+1.5
1,008,022	+				+1.9
1,008,052	-				-3.3
1,008,052	-				-2.9
1,008,071	+				+1.3
1,008,113	+		CCNA_00932	0.11	+1.6
1,008,121	-		CCNA_00932	0.12	-2.4
1,008,133	+		CCNA_00932	0.15	+1.1
1,008,143	-				+0.5
1,008,153	-		CCNA_00932	0.19	-0.7
1,008,176	-		CCNA_00932	0.24	-2.2
1,008,204	+		CCNA_00932	0.30	+1.0
1,008,211	+		CCNA_00932	0.32	+2.1
1,008,212	+		CCNA_00932	0.32	+1.4
1,008,220	-		CCNA_00932	0.34	-1.8
1,008,233	+		CCNA_00932	0.37	+1.6
1,008,237	+		CCNA_00932	0.37	+1.7
1,008,238	+		CCNA_00932	0.38	+1.6
1,008,247	-		CCNA_00932	0.40	+0.2
1,008,265	+		CCNA_00932	0.44	+2.2
1,008,274	+		CCNA_00932	0.45	+1.8
1,008,282	-		CCNA_00932	0.47	-1.4
1,008,282	-		CCNA_00932	0.47	-2.4
1,008,282	-		CCNA_00932	0.47	-0.7
1,008,302	-		CCNA_00932	0.52	-2.1
1,008,309	+		CCNA_00932	0.53	+1.1
1,008,323	+		CCNA_00932	0.56	+2.1
1,008,335	+		CCNA_00932	0.59	+0.7
1,008,335	+		CCNA_00932	0.59	+1.7
1,008,335	+		CCNA_00932	0.59	+1.9
1,008,343	-		CCNA_00932	0.60	-2.2
1,008,343	-		CCNA_00932	0.60	-2.7
1,008,343	-		CCNA_00932	0.60	-0.2
1,008,383	+		CCNA_00932	0.69	+1.5
1,008,414	+		CCNA_00932	0.76	+2.2
1,008,468	+		CCNA_00932	0.87	+1.7
1,008,484	+				+2.0
1,008,484	+				+2.0
1,008,484	+				+2.2
1,008,491	-				-1.7
1,008,492	-				-0.7
1,008,492	-				-1.0
1,008,492	-				-0.9
1,008,514	+				+2.2
1,008,519	+				+1.2
1,008,519	+				+1.3
1,008,522	-				-0.2
1,008,585	+				+1.2
1,008,602	+				+1.9
1,008,610	+				+2.8
1,008,624	+				+1.4
1,008,626	+				+2.6
1,008,666	+				+1.5
1,008,691	+				+0.7
1,008,723	-				-0.2
1,008,752	+				+1.4
1,008,768	-		CCNA_00933	0.11	-0.5
1,008,768	-		CCNA_00933	0.11	-0.1
1,008,784	+		CCNA_00933	0.12	+1.1
1,008,803	+		CCNA_00933	0.13	+0.1
1,008,847	-		CCNA_00933	0.16	+0.2
1,008,850	+		CCNA_00933	0.17	+1.4
1,008,894	-		CCNA_00933	0.20	-0.7
1,008,912	+		CCNA_00933	0.21	+2.5
1,009,003	+		CCNA_00933	0.28	+1.2
1,009,057	+		CCNA_00933	0.31	+0.0
1,009,065	-		CCNA_00933	0.32	-0.8
1,009,065	-		CCNA_00933	0.32	+1.3
1,009,065	-		CCNA_00933	0.32	-1.9
1,009,071	-		CCNA_00933	0.32	+2.3
1,009,119	+		CCNA_00933	0.36	+1.5
1,009,127	-		CCNA_00933	0.36	+1.5
1,009,167	+		CCNA_00933	0.39	+0.8
1,009,167	+		CCNA_00933	0.39	+1.0
1,009,167	+		CCNA_00933	0.39	+0.7
1,009,167	+		CCNA_00933	0.39	+0.8
1,009,167	+		CCNA_00933	0.39	+0.8
1,009,167	+		CCNA_00933	0.39	+0.9
1,009,175	-		CCNA_00933	0.40	-1.3
1,009,175	-		CCNA_00933	0.40	+0.2
1,009,175	-		CCNA_00933	0.40	-1.8
1,009,175	-		CCNA_00933	0.40	+0.2
1,009,175	-		CCNA_00933	0.40	-1.9
1,009,175	-		CCNA_00933	0.40	-0.3
1,009,175	-		CCNA_00933	0.40	-1.0
1,009,177	-		CCNA_00933	0.40	+0.7
1,009,192	+		CCNA_00933	0.41	+0.2
1,009,210	+		CCNA_00933	0.42	+0.5
1,009,215	+		CCNA_00933	0.43	+0.9
1,009,223	-		CCNA_00933	0.43	-2.4
1,009,242	-		CCNA_00933	0.44	-1.5
1,009,244	+		CCNA_00933	0.45	+0.4
1,009,307	-		CCNA_00933	0.49	-1.4
1,009,316	-		CCNA_00933	0.50	-0.8
1,009,323	+		CCNA_00933	0.50	+1.4
1,009,331	-		CCNA_00933	0.51	-0.8
1,009,344	+		CCNA_00933	0.52	+0.9
1,009,379	-		CCNA_00933	0.54	-1.5
1,009,380	-		CCNA_00933	0.54	-1.1
1,009,401	+		CCNA_00933	0.56	+0.8
1,009,409	-		CCNA_00933	0.56	-0.3
1,009,442	+		CCNA_00933	0.59	+0.6
1,009,522	-		CCNA_00933	0.64	-0.9
1,009,590	+		CCNA_00933	0.69	+0.7
1,009,598	-		CCNA_00933	0.70	-0.7
1,009,600	-		CCNA_00933	0.70	+1.5
1,009,617	-		CCNA_00933	0.71	+0.1
1,009,622	-		CCNA_00933	0.71	-0.8
1,009,634	+		CCNA_00933	0.72	+0.4
1,009,648	+		CCNA_00933	0.73	+0.3
1,009,666	-		CCNA_00933	0.75	+0.1
1,009,685	-		CCNA_00933	0.76	-1.0
1,009,685	-		CCNA_00933	0.76	+0.0
1,009,697	-		CCNA_00933	0.77	-0.4
1,009,698	-		CCNA_00933	0.77	-3.5
1,009,795	+		CCNA_00933	0.84	+0.2
1,009,803	-		CCNA_00933	0.84	+3.1
1,009,823	+		CCNA_00933	0.86	+0.8
1,009,824	-		CCNA_00933	0.86	-0.4
1,009,840	+		CCNA_00933	0.87	+0.9
1,009,848	-		CCNA_00933	0.88	-0.5
1,009,855	+		CCNA_00933	0.88	+0.4
1,009,887	-				+0.3
1,009,934	-				-0.5
1,009,939	-				+0.1
1,009,939	-				+0.1
1,009,939	-				+0.3
1,009,939	-				-0.3
1,009,949	+				+2.1
1,009,957	-				-1.9
1,010,056	+				+1.2
1,010,064	-				-0.0
1,010,099	-				-1.2
1,010,155	+		CCNA_00934	0.16	+1.7
1,010,163	-		CCNA_00934	0.17	-0.7
1,010,173	-		CCNA_00934	0.19	-1.8
1,010,173	-		CCNA_00934	0.19	-1.5
1,010,182	+		CCNA_00934	0.21	+0.5
1,010,187	+		CCNA_00934	0.22	-0.1
1,010,190	-		CCNA_00934	0.22	-0.0
1,010,210	-		CCNA_00934	0.26	+1.3
1,010,316	-		CCNA_00934	0.47	-2.0
1,010,318	+		CCNA_00934	0.47	+1.3
1,010,326	-		CCNA_00934	0.48	+0.3
1,010,373	+		CCNA_00934	0.57	+0.9
1,010,381	-		CCNA_00934	0.59	-1.5
1,010,381	-		CCNA_00934	0.59	+0.4
1,010,399	+		CCNA_00934	0.62	+1.7
1,010,417	+		CCNA_00934	0.66	+0.8
1,010,445	+		CCNA_00934	0.71	+0.4
1,010,445	+		CCNA_00934	0.71	+1.9
1,010,450	+		CCNA_00934	0.72	+1.2
1,010,450	+		CCNA_00934	0.72	+0.8
1,010,450	+		CCNA_00934	0.72	+0.5
1,010,450	+		CCNA_00934	0.72	+0.2
1,010,450	+		CCNA_00934	0.72	+1.2
1,010,472	-		CCNA_00934	0.76	+0.3
1,010,504	+		CCNA_00934	0.83	+1.3
1,010,504	+		CCNA_00934	0.83	+1.1
1,010,521	-		CCNA_00934	0.86	-0.7
1,010,550	+				+0.9
1,010,585	-				-1.5
1,010,596	-				-0.5
1,010,596	-				-2.8
1,010,596	-				-1.4
1,010,649	-				-1.6
1,010,660	+				-0.4
1,010,663	-				-0.5
1,010,665	+				+1.6
1,010,784	-				-0.8
1,010,789	+				+0.1
1,010,797	-		CCNA_00935	0.11	+1.3
1,010,797	-		CCNA_00935	0.11	+1.5
1,010,803	-		CCNA_00935	0.11	-1.7
1,010,803	-		CCNA_00935	0.11	-0.6
1,010,881	+		CCNA_00935	0.19	+2.0
1,010,918	-		CCNA_00935	0.23	-1.1
1,010,918	-		CCNA_00935	0.23	-0.2
1,010,933	-		CCNA_00935	0.24	-1.9
1,010,938	-		CCNA_00935	0.25	-1.0
1,010,968	+		CCNA_00935	0.28	+0.2
1,010,985	+		CCNA_00935	0.30	-0.2
1,010,985	+		CCNA_00935	0.30	-0.3
1,010,993	-		CCNA_00935	0.30	+0.1
1,010,993	-		CCNA_00935	0.30	+0.7
1,010,993	-		CCNA_00935	0.30	-0.2
1,010,993	-		CCNA_00935	0.30	+0.4
1,010,995	+		CCNA_00935	0.31	-0.1