Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00696 and CCNA_00698 are separated by 513 nucleotides CCNA_00698 and CCNA_00699 are separated by 265 nucleotides
CCNA_00696: CCNA_00696 - O6-methylguanine-DNA methyltransferase, at 756,229 to 756,804
_00696
CCNA_00698: CCNA_00698 - hypothetical protein, at 757,318 to 757,815
_00698
CCNA_00699: CCNA_00699 - LSU ribosomal protein L28P, at 758,081 to 758,380
_00699
Position (kb) 757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 756.318 kb on + strand, within CCNA_00696 at 756.323 kb on - strand, within CCNA_00696 at 756.326 kb on - strand, within CCNA_00696 at 756.329 kb on + strand, within CCNA_00696 at 756.337 kb on - strand, within CCNA_00696 at 756.344 kb on + strand, within CCNA_00696 at 756.363 kb on + strand, within CCNA_00696 at 756.371 kb on + strand, within CCNA_00696 at 756.371 kb on - strand, within CCNA_00696 at 756.376 kb on + strand, within CCNA_00696 at 756.384 kb on - strand, within CCNA_00696 at 756.432 kb on + strand, within CCNA_00696 at 756.451 kb on + strand, within CCNA_00696 at 756.456 kb on + strand, within CCNA_00696 at 756.471 kb on + strand, within CCNA_00696 at 756.471 kb on + strand, within CCNA_00696 at 756.491 kb on + strand, within CCNA_00696 at 756.505 kb on - strand, within CCNA_00696 at 756.519 kb on - strand, within CCNA_00696 at 756.522 kb on + strand, within CCNA_00696 at 756.524 kb on - strand, within CCNA_00696 at 756.541 kb on + strand, within CCNA_00696 at 756.541 kb on + strand, within CCNA_00696 at 756.541 kb on + strand, within CCNA_00696 at 756.547 kb on + strand, within CCNA_00696 at 756.551 kb on + strand, within CCNA_00696 at 756.571 kb on - strand, within CCNA_00696 at 756.652 kb on - strand, within CCNA_00696 at 756.671 kb on + strand, within CCNA_00696 at 756.700 kb on + strand, within CCNA_00696 at 756.708 kb on - strand, within CCNA_00696 at 756.728 kb on - strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.749 kb on - strand at 756.749 kb on - strand at 756.749 kb on - strand at 756.766 kb on + strand at 756.770 kb on - strand at 756.774 kb on - strand at 756.806 kb on + strand at 756.813 kb on + strand at 756.813 kb on + strand at 756.821 kb on - strand at 756.821 kb on - strand at 756.828 kb on - strand at 756.828 kb on - strand at 756.833 kb on + strand at 756.841 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.874 kb on - strand at 757.023 kb on + strand at 757.023 kb on + strand at 757.025 kb on + strand at 757.052 kb on + strand at 757.052 kb on + strand at 757.060 kb on - strand at 757.071 kb on - strand at 757.091 kb on + strand at 757.092 kb on - strand at 757.148 kb on - strand at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.384 kb on - strand, within CCNA_00698 at 757.403 kb on + strand, within CCNA_00698 at 757.437 kb on - strand, within CCNA_00698 at 757.442 kb on + strand, within CCNA_00698 at 757.449 kb on + strand, within CCNA_00698 at 757.467 kb on - strand, within CCNA_00698 at 757.467 kb on - strand, within CCNA_00698 at 757.476 kb on + strand, within CCNA_00698 at 757.515 kb on - strand, within CCNA_00698 at 757.516 kb on + strand, within CCNA_00698 at 757.524 kb on - strand, within CCNA_00698 at 757.527 kb on + strand, within CCNA_00698 at 757.552 kb on - strand, within CCNA_00698 at 757.566 kb on - strand, within CCNA_00698 at 757.571 kb on + strand, within CCNA_00698 at 757.571 kb on + strand, within CCNA_00698 at 757.579 kb on - strand, within CCNA_00698 at 757.587 kb on - strand, within CCNA_00698 at 757.596 kb on + strand, within CCNA_00698 at 757.596 kb on + strand, within CCNA_00698 at 757.626 kb on + strand, within CCNA_00698 at 757.645 kb on + strand, within CCNA_00698 at 757.653 kb on - strand at 757.663 kb on + strand, within CCNA_00698 at 757.724 kb on + strand, within CCNA_00698 at 757.732 kb on - strand, within CCNA_00698 at 757.736 kb on + strand, within CCNA_00698 at 757.746 kb on + strand, within CCNA_00698 at 757.754 kb on - strand at 757.780 kb on + strand at 757.780 kb on + strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.826 kb on + strand at 757.830 kb on - strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.846 kb on - strand at 757.846 kb on - strand at 757.846 kb on - strand at 757.866 kb on + strand at 757.875 kb on - strand at 757.885 kb on - strand at 757.889 kb on - strand at 757.923 kb on + strand at 757.932 kb on - strand at 757.932 kb on - strand at 757.937 kb on - strand at 757.939 kb on + strand at 757.947 kb on - strand at 758.341 kb on + strand, within CCNA_00699 at 758.341 kb on + strand, within CCNA_00699 at 758.353 kb on + strand at 758.353 kb on + strand at 758.375 kb on + strand at 758.525 kb on + strand at 758.541 kb on - strand at 758.541 kb on - strand at 758.567 kb on - strand at 758.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 756,318 + CCNA_00696 0.15 +2.2 756,323 - CCNA_00696 0.16 +2.0 756,326 - CCNA_00696 0.17 -1.5 756,329 + CCNA_00696 0.17 -0.6 756,337 - CCNA_00696 0.19 -0.8 756,344 + CCNA_00696 0.20 +1.2 756,363 + CCNA_00696 0.23 +0.6 756,371 + CCNA_00696 0.25 +2.0 756,371 - CCNA_00696 0.25 +1.7 756,376 + CCNA_00696 0.26 -0.0 756,384 - CCNA_00696 0.27 -0.8 756,432 + CCNA_00696 0.35 +0.5 756,451 + CCNA_00696 0.39 +1.8 756,456 + CCNA_00696 0.39 +1.4 756,471 + CCNA_00696 0.42 +0.1 756,471 + CCNA_00696 0.42 +0.6 756,491 + CCNA_00696 0.45 +1.2 756,505 - CCNA_00696 0.48 +1.8 756,519 - CCNA_00696 0.50 +0.4 756,522 + CCNA_00696 0.51 +1.1 756,524 - CCNA_00696 0.51 -0.4 756,541 + CCNA_00696 0.54 +1.2 756,541 + CCNA_00696 0.54 +0.4 756,541 + CCNA_00696 0.54 +1.8 756,547 + CCNA_00696 0.55 +1.2 756,551 + CCNA_00696 0.56 +0.9 756,571 - CCNA_00696 0.59 +1.0 756,652 - CCNA_00696 0.73 -0.5 756,671 + CCNA_00696 0.77 +0.4 756,700 + CCNA_00696 0.82 -0.5 756,708 - CCNA_00696 0.83 +2.6 756,728 - CCNA_00696 0.87 +1.1 756,741 + CCNA_00696 0.89 +1.3 756,741 + CCNA_00696 0.89 +0.1 756,741 + CCNA_00696 0.89 +0.4 756,741 + CCNA_00696 0.89 +0.2 756,749 - -0.9 756,749 - +0.4 756,749 - +1.1 756,766 + +2.6 756,770 - +0.1 756,774 - +0.2 756,806 + +0.7 756,813 + +1.4 756,813 + +1.5 756,821 - +1.0 756,821 - -0.4 756,828 - -0.0 756,828 - +1.3 756,833 + +1.1 756,841 - -0.9 756,872 - +1.5 756,872 - -0.8 756,872 - +1.0 756,872 - +0.8 756,872 - +1.7 756,874 - +0.4 757,023 + +0.6 757,023 + -0.6 757,025 + +1.5 757,052 + -0.2 757,052 + +2.3 757,060 - +0.9 757,071 - +1.9 757,091 + +0.1 757,092 - +0.0 757,148 - +2.5 757,376 + CCNA_00698 0.12 -0.4 757,376 + CCNA_00698 0.12 -1.5 757,376 + CCNA_00698 0.12 -0.8 757,376 + CCNA_00698 0.12 +0.2 757,384 - CCNA_00698 0.13 -0.3 757,403 + CCNA_00698 0.17 +0.4 757,437 - CCNA_00698 0.24 +0.5 757,442 + CCNA_00698 0.25 +0.3 757,449 + CCNA_00698 0.26 +1.7 757,467 - CCNA_00698 0.30 +0.6 757,467 - CCNA_00698 0.30 -0.4 757,476 + CCNA_00698 0.32 +2.0 757,515 - CCNA_00698 0.40 +0.7 757,516 + CCNA_00698 0.40 -0.6 757,524 - CCNA_00698 0.41 -0.1 757,527 + CCNA_00698 0.42 +0.2 757,552 - CCNA_00698 0.47 +0.4 757,566 - CCNA_00698 0.50 -0.9 757,571 + CCNA_00698 0.51 +0.5 757,571 + CCNA_00698 0.51 -1.9 757,579 - CCNA_00698 0.52 +0.3 757,587 - CCNA_00698 0.54 -0.5 757,596 + CCNA_00698 0.56 -0.7 757,596 + CCNA_00698 0.56 -1.4 757,626 + CCNA_00698 0.62 -0.2 757,645 + CCNA_00698 0.66 +1.1 757,653 - +2.7 757,663 + CCNA_00698 0.69 +0.2 757,724 + CCNA_00698 0.82 -0.3 757,732 - CCNA_00698 0.83 -2.4 757,736 + CCNA_00698 0.84 -1.4 757,746 + CCNA_00698 0.86 -0.2 757,754 - +2.0 757,780 + +0.4 757,780 + -0.2 757,788 - +1.1 757,788 - +0.1 757,788 - -1.3 757,788 - +0.2 757,788 - -0.4 757,788 - +0.4 757,788 - -1.3 757,788 - +0.2 757,788 - +3.7 757,826 + +0.2 757,830 - -2.2 757,838 + -3.1 757,838 + -0.4 757,838 + -0.7 757,838 + +0.7 757,838 + +0.2 757,838 + -0.2 757,846 - +1.7 757,846 - +0.8 757,846 - +0.2 757,866 + +1.1 757,875 - -0.5 757,885 - -1.5 757,889 - +1.1 757,923 + -0.9 757,932 - +0.1 757,932 - -2.6 757,937 - -0.5 757,939 + +1.0 757,947 - +1.2 758,341 + CCNA_00699 0.87 +3.9 758,341 + CCNA_00699 0.87 +3.8 758,353 + -0.2 758,353 + +4.4 758,375 + +4.1 758,525 + +1.4 758,541 - +0.7 758,541 - +3.0 758,567 - +0.7 758,601 - +1.1
Or see this region's nucleotide sequence