Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00604

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00602 and CCNA_00603 overlap by 4 nucleotidesCCNA_00603 and CCNA_00604 overlap by 23 nucleotidesCCNA_00604 and CCNA_00605 are separated by 109 nucleotides CCNA_00602: CCNA_00602 - von Willebrand factor type A domain protein, at 637,845 to 639,158 _00602 CCNA_00603: CCNA_00603 - integral membrane protein, at 639,155 to 640,153 _00603 CCNA_00604: CCNA_00604 - RDD family membrane protein, at 640,131 to 641,012 _00604 CCNA_00605: CCNA_00605 - hypothetical protein, at 641,122 to 641,910 _00605 Position (kb) 640 641 642Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 639.147 kb on + strandat 639.147 kb on + strandat 639.160 kb on - strandat 639.162 kb on + strandat 639.163 kb on + strandat 639.163 kb on + strandat 639.173 kb on + strandat 639.181 kb on + strandat 639.181 kb on + strandat 639.189 kb on - strandat 639.228 kb on + strandat 639.251 kb on + strandat 639.251 kb on + strandat 639.251 kb on + strandat 639.251 kb on + strandat 639.258 kb on - strand, within CCNA_00603at 639.282 kb on + strand, within CCNA_00603at 639.300 kb on + strand, within CCNA_00603at 639.305 kb on + strand, within CCNA_00603at 639.305 kb on + strand, within CCNA_00603at 639.308 kb on + strand, within CCNA_00603at 639.310 kb on + strand, within CCNA_00603at 639.313 kb on - strand, within CCNA_00603at 639.313 kb on - strand, within CCNA_00603at 639.313 kb on - strand, within CCNA_00603at 639.315 kb on + strand, within CCNA_00603at 639.318 kb on - strand, within CCNA_00603at 639.318 kb on - strand, within CCNA_00603at 639.364 kb on + strand, within CCNA_00603at 639.375 kb on - strand, within CCNA_00603at 639.421 kb on - strand, within CCNA_00603at 639.425 kb on + strand, within CCNA_00603at 639.440 kb on + strand, within CCNA_00603at 639.453 kb on - strand, within CCNA_00603at 639.453 kb on - strand, within CCNA_00603at 639.503 kb on + strand, within CCNA_00603at 639.503 kb on + strand, within CCNA_00603at 639.511 kb on - strand, within CCNA_00603at 639.511 kb on - strand, within CCNA_00603at 639.511 kb on - strand, within CCNA_00603at 639.566 kb on + strand, within CCNA_00603at 639.593 kb on - strand, within CCNA_00603at 639.698 kb on + strand, within CCNA_00603at 639.725 kb on + strand, within CCNA_00603at 639.733 kb on - strand, within CCNA_00603at 639.737 kb on + strand, within CCNA_00603at 639.737 kb on + strand, within CCNA_00603at 639.744 kb on + strand, within CCNA_00603at 639.745 kb on - strand, within CCNA_00603at 639.745 kb on - strand, within CCNA_00603at 639.745 kb on - strand, within CCNA_00603at 639.745 kb on - strand, within CCNA_00603at 639.745 kb on - strand, within CCNA_00603at 639.745 kb on - strand, within CCNA_00603at 639.752 kb on - strand, within CCNA_00603at 639.766 kb on - strand, within CCNA_00603at 639.770 kb on + strand, within CCNA_00603at 639.778 kb on - strand, within CCNA_00603at 639.779 kb on + strand, within CCNA_00603at 639.796 kb on + strand, within CCNA_00603at 639.825 kb on + strand, within CCNA_00603at 639.891 kb on - strand, within CCNA_00603at 639.970 kb on + strand, within CCNA_00603at 640.008 kb on + strand, within CCNA_00603at 640.008 kb on + strand, within CCNA_00603at 640.014 kb on + strand, within CCNA_00603at 640.024 kb on + strand, within CCNA_00603at 640.024 kb on + strand, within CCNA_00603at 640.039 kb on + strand, within CCNA_00603at 640.047 kb on + strand, within CCNA_00603at 640.106 kb on + strandat 640.111 kb on + strandat 640.119 kb on - strandat 640.128 kb on + strandat 640.158 kb on + strandat 640.291 kb on + strand, within CCNA_00604at 640.301 kb on + strand, within CCNA_00604at 640.301 kb on + strand, within CCNA_00604at 640.447 kb on + strand, within CCNA_00604at 640.457 kb on + strand, within CCNA_00604at 640.525 kb on + strand, within CCNA_00604at 640.525 kb on + strand, within CCNA_00604at 640.525 kb on + strand, within CCNA_00604at 640.533 kb on - strand, within CCNA_00604at 640.561 kb on + strand, within CCNA_00604at 640.568 kb on + strand, within CCNA_00604at 640.568 kb on + strand, within CCNA_00604at 640.581 kb on + strand, within CCNA_00604at 640.581 kb on + strand, within CCNA_00604at 640.581 kb on + strand, within CCNA_00604at 640.589 kb on - strand, within CCNA_00604at 640.589 kb on - strand, within CCNA_00604at 640.589 kb on - strand, within CCNA_00604at 640.605 kb on + strand, within CCNA_00604at 640.643 kb on + strand, within CCNA_00604at 640.643 kb on + strand, within CCNA_00604at 640.643 kb on + strand, within CCNA_00604at 640.643 kb on + strand, within CCNA_00604at 640.651 kb on - strand, within CCNA_00604at 640.651 kb on - strand, within CCNA_00604at 640.651 kb on - strand, within CCNA_00604at 640.651 kb on - strand, within CCNA_00604at 640.702 kb on + strand, within CCNA_00604at 640.702 kb on + strand, within CCNA_00604at 640.704 kb on + strand, within CCNA_00604at 640.707 kb on + strand, within CCNA_00604at 640.709 kb on + strand, within CCNA_00604at 640.714 kb on + strand, within CCNA_00604at 640.731 kb on + strand, within CCNA_00604at 640.741 kb on + strand, within CCNA_00604at 640.773 kb on - strand, within CCNA_00604at 640.775 kb on + strand, within CCNA_00604at 640.775 kb on + strand, within CCNA_00604at 640.783 kb on - strand, within CCNA_00604at 640.784 kb on - strand, within CCNA_00604at 640.784 kb on - strand, within CCNA_00604at 640.784 kb on - strand, within CCNA_00604at 640.789 kb on - strand, within CCNA_00604at 640.856 kb on + strand, within CCNA_00604at 640.914 kb on + strand, within CCNA_00604at 640.914 kb on + strand, within CCNA_00604at 640.944 kb on + strandat 640.944 kb on + strandat 640.949 kb on + strandat 640.949 kb on + strandat 640.949 kb on + strandat 641.025 kb on + strandat 641.028 kb on - strandat 641.164 kb on - strandat 641.170 kb on + strandat 641.186 kb on - strandat 641.219 kb on + strand, within CCNA_00605at 641.226 kb on - strand, within CCNA_00605at 641.231 kb on + strand, within CCNA_00605at 641.233 kb on + strand, within CCNA_00605at 641.233 kb on + strand, within CCNA_00605at 641.241 kb on - strand, within CCNA_00605at 641.245 kb on + strand, within CCNA_00605at 641.253 kb on - strand, within CCNA_00605at 641.253 kb on - strand, within CCNA_00605at 641.253 kb on - strand, within CCNA_00605at 641.288 kb on - strand, within CCNA_00605at 641.302 kb on + strand, within CCNA_00605at 641.302 kb on + strand, within CCNA_00605at 641.302 kb on + strand, within CCNA_00605at 641.310 kb on - strand, within CCNA_00605at 641.310 kb on - strand, within CCNA_00605at 641.319 kb on + strand, within CCNA_00605at 641.338 kb on + strand, within CCNA_00605at 641.338 kb on + strand, within CCNA_00605at 641.338 kb on + strand, within CCNA_00605at 641.338 kb on + strand, within CCNA_00605at 641.346 kb on - strand, within CCNA_00605at 641.368 kb on - strand, within CCNA_00605at 641.410 kb on - strand, within CCNA_00605at 641.427 kb on - strand, within CCNA_00605at 641.437 kb on + strand, within CCNA_00605at 641.444 kb on - strand, within CCNA_00605at 641.444 kb on - strand, within CCNA_00605at 641.446 kb on + strand, within CCNA_00605at 641.454 kb on - strand, within CCNA_00605at 641.458 kb on + strand, within CCNA_00605at 641.483 kb on - strand, within CCNA_00605at 641.500 kb on - strand, within CCNA_00605at 641.546 kb on - strand, within CCNA_00605at 641.551 kb on + strand, within CCNA_00605at 641.579 kb on + strand, within CCNA_00605at 641.584 kb on + strand, within CCNA_00605at 641.592 kb on - strand, within CCNA_00605at 641.592 kb on - strand, within CCNA_00605at 641.592 kb on - strand, within CCNA_00605at 641.615 kb on - strand, within CCNA_00605at 641.662 kb on + strand, within CCNA_00605at 641.671 kb on - strand, within CCNA_00605at 641.703 kb on - strand, within CCNA_00605at 641.720 kb on + strand, within CCNA_00605at 641.732 kb on + strand, within CCNA_00605at 641.738 kb on + strand, within CCNA_00605at 641.738 kb on + strand, within CCNA_00605at 641.745 kb on + strand, within CCNA_00605at 641.746 kb on - strand, within CCNA_00605at 641.753 kb on - strand, within CCNA_00605at 641.763 kb on - strand, within CCNA_00605at 641.799 kb on + strand, within CCNA_00605at 641.799 kb on + strand, within CCNA_00605at 641.799 kb on + strand, within CCNA_00605at 641.799 kb on + strand, within CCNA_00605at 641.807 kb on - strand, within CCNA_00605at 641.807 kb on - strand, within CCNA_00605at 641.807 kb on - strand, within CCNA_00605at 641.807 kb on - strandat 641.807 kb on - strand, within CCNA_00605at 641.807 kb on - strand, within CCNA_00605at 641.807 kb on - strand, within CCNA_00605at 641.818 kb on + strand, within CCNA_00605at 641.823 kb on + strand, within CCNA_00605at 641.823 kb on - strand, within CCNA_00605at 641.831 kb on - strand, within CCNA_00605at 641.831 kb on - strand, within CCNA_00605at 641.831 kb on - strand, within CCNA_00605at 641.831 kb on - strand, within CCNA_00605at 641.831 kb on - strand, within CCNA_00605at 641.831 kb on - strand, within CCNA_00605at 641.831 kb on - strand, within CCNA_00605at 641.831 kb on - strand, within CCNA_00605at 641.831 kb on - strand, within CCNA_00605at 641.844 kb on + strandat 641.852 kb on - strandat 641.852 kb on - strandat 641.852 kb on - strandat 641.874 kb on + strandat 641.882 kb on - strandat 641.882 kb on - strandat 641.950 kb on - strandat 641.957 kb on - strandat 641.957 kb on - strandat 641.981 kb on + strandat 641.989 kb on + strandat 641.989 kb on - strandat 641.997 kb on - strandat 641.998 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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639,147 + +0.7
639,147 + +1.0
639,160 - -0.0
639,162 + -0.2
639,163 + +1.8
639,163 + +0.7
639,173 + +1.2
639,181 + +1.3
639,181 + +2.1
639,189 - +0.1
639,228 + -0.3
639,251 + -0.0
639,251 + +0.7
639,251 + +0.1
639,251 + +0.0
639,258 - CCNA_00603 0.10 +1.1
639,282 + CCNA_00603 0.13 +1.4
639,300 + CCNA_00603 0.15 +1.6
639,305 + CCNA_00603 0.15 -1.5
639,305 + CCNA_00603 0.15 +1.3
639,308 + CCNA_00603 0.15 +2.4
639,310 + CCNA_00603 0.16 -0.8
639,313 - CCNA_00603 0.16 -0.7
639,313 - CCNA_00603 0.16 -0.4
639,313 - CCNA_00603 0.16 -0.5
639,315 + CCNA_00603 0.16 +0.4
639,318 - CCNA_00603 0.16 -2.2
639,318 - CCNA_00603 0.16 +1.0
639,364 + CCNA_00603 0.21 -0.5
639,375 - CCNA_00603 0.22 -0.8
639,421 - CCNA_00603 0.27 +0.7
639,425 + CCNA_00603 0.27 +0.3
639,440 + CCNA_00603 0.29 +0.1
639,453 - CCNA_00603 0.30 +0.4
639,453 - CCNA_00603 0.30 -0.4
639,503 + CCNA_00603 0.35 -1.4
639,503 + CCNA_00603 0.35 +0.2
639,511 - CCNA_00603 0.36 -0.8
639,511 - CCNA_00603 0.36 -0.7
639,511 - CCNA_00603 0.36 -1.6
639,566 + CCNA_00603 0.41 -1.2
639,593 - CCNA_00603 0.44 -1.7
639,698 + CCNA_00603 0.54 +0.5
639,725 + CCNA_00603 0.57 -0.3
639,733 - CCNA_00603 0.58 -1.2
639,737 + CCNA_00603 0.58 +0.7
639,737 + CCNA_00603 0.58 +1.6
639,744 + CCNA_00603 0.59 +0.7
639,745 - CCNA_00603 0.59 -0.2
639,745 - CCNA_00603 0.59 -0.8
639,745 - CCNA_00603 0.59 -1.8
639,745 - CCNA_00603 0.59 -0.7
639,745 - CCNA_00603 0.59 -0.8
639,745 - CCNA_00603 0.59 -0.4
639,752 - CCNA_00603 0.60 -0.7
639,766 - CCNA_00603 0.61 -1.0
639,770 + CCNA_00603 0.62 +0.0
639,778 - CCNA_00603 0.62 -2.6
639,779 + CCNA_00603 0.62 +0.5
639,796 + CCNA_00603 0.64 +0.9
639,825 + CCNA_00603 0.67 +0.9
639,891 - CCNA_00603 0.74 +0.6
639,970 + CCNA_00603 0.82 +1.0
640,008 + CCNA_00603 0.85 +0.2
640,008 + CCNA_00603 0.85 -0.2
640,014 + CCNA_00603 0.86 -1.6
640,024 + CCNA_00603 0.87 -1.4
640,024 + CCNA_00603 0.87 +0.3
640,039 + CCNA_00603 0.88 +2.0
640,047 + CCNA_00603 0.89 +0.2
640,106 + -0.6
640,111 + +0.6
640,119 - -1.8
640,128 + -0.1
640,158 + -0.1
640,291 + CCNA_00604 0.18 -2.5
640,301 + CCNA_00604 0.19 +0.7
640,301 + CCNA_00604 0.19 -0.7
640,447 + CCNA_00604 0.36 +0.6
640,457 + CCNA_00604 0.37 -0.7
640,525 + CCNA_00604 0.45 +0.2
640,525 + CCNA_00604 0.45 -1.1
640,525 + CCNA_00604 0.45 -0.5
640,533 - CCNA_00604 0.46 +2.1
640,561 + CCNA_00604 0.49 -0.4
640,568 + CCNA_00604 0.50 -0.3
640,568 + CCNA_00604 0.50 +0.2
640,581 + CCNA_00604 0.51 -0.2
640,581 + CCNA_00604 0.51 -0.2
640,581 + CCNA_00604 0.51 -0.6
640,589 - CCNA_00604 0.52 -1.0
640,589 - CCNA_00604 0.52 -0.8
640,589 - CCNA_00604 0.52 +0.7
640,605 + CCNA_00604 0.54 +1.4
640,643 + CCNA_00604 0.58 -2.5
640,643 + CCNA_00604 0.58 -0.8
640,643 + CCNA_00604 0.58 -3.1
640,643 + CCNA_00604 0.58 +1.2
640,651 - CCNA_00604 0.59 -1.4
640,651 - CCNA_00604 0.59 -2.1
640,651 - CCNA_00604 0.59 -0.2
640,651 - CCNA_00604 0.59 -1.2
640,702 + CCNA_00604 0.65 -0.6
640,702 + CCNA_00604 0.65 -1.6
640,704 + CCNA_00604 0.65 -1.7
640,707 + CCNA_00604 0.65 -1.7
640,709 + CCNA_00604 0.66 -1.8
640,714 + CCNA_00604 0.66 -0.5
640,731 + CCNA_00604 0.68 -1.7
640,741 + CCNA_00604 0.69 +0.1
640,773 - CCNA_00604 0.73 +0.2
640,775 + CCNA_00604 0.73 -1.2
640,775 + CCNA_00604 0.73 +0.5
640,783 - CCNA_00604 0.74 -0.8
640,784 - CCNA_00604 0.74 -0.3
640,784 - CCNA_00604 0.74 -1.7
640,784 - CCNA_00604 0.74 +0.3
640,789 - CCNA_00604 0.75 +2.4
640,856 + CCNA_00604 0.82 +0.8
640,914 + CCNA_00604 0.89 -0.4
640,914 + CCNA_00604 0.89 +0.4
640,944 + +1.4
640,944 + +1.5
640,949 + -0.3
640,949 + -2.6
640,949 + +0.1
641,025 + +1.1
641,028 - +1.0
641,164 - -0.7
641,170 + -1.3
641,186 - +1.1
641,219 + CCNA_00605 0.12 -0.0
641,226 - CCNA_00605 0.13 +2.0
641,231 + CCNA_00605 0.14 -0.2
641,233 + CCNA_00605 0.14 -0.2
641,233 + CCNA_00605 0.14 +0.4
641,241 - CCNA_00605 0.15 +2.5
641,245 + CCNA_00605 0.16 -2.7
641,253 - CCNA_00605 0.17 +2.2
641,253 - CCNA_00605 0.17 +1.6
641,253 - CCNA_00605 0.17 +1.1
641,288 - CCNA_00605 0.21 +1.7
641,302 + CCNA_00605 0.23 -0.9
641,302 + CCNA_00605 0.23 +1.4
641,302 + CCNA_00605 0.23 +0.4
641,310 - CCNA_00605 0.24 +1.5
641,310 - CCNA_00605 0.24 +1.3
641,319 + CCNA_00605 0.25 -0.2
641,338 + CCNA_00605 0.27 -0.9
641,338 + CCNA_00605 0.27 -1.7
641,338 + CCNA_00605 0.27 +2.5
641,338 + CCNA_00605 0.27 -1.9
641,346 - CCNA_00605 0.28 +2.4
641,368 - CCNA_00605 0.31 +2.2
641,410 - CCNA_00605 0.37 +1.3
641,427 - CCNA_00605 0.39 +1.5
641,437 + CCNA_00605 0.40 +1.6
641,444 - CCNA_00605 0.41 +0.8
641,444 - CCNA_00605 0.41 +1.2
641,446 + CCNA_00605 0.41 -0.5
641,454 - CCNA_00605 0.42 +3.0
641,458 + CCNA_00605 0.43 -1.2
641,483 - CCNA_00605 0.46 +0.5
641,500 - CCNA_00605 0.48 +1.1
641,546 - CCNA_00605 0.54 +1.8
641,551 + CCNA_00605 0.54 +1.1
641,579 + CCNA_00605 0.58 -1.2
641,584 + CCNA_00605 0.59 +2.2
641,592 - CCNA_00605 0.60 +1.7
641,592 - CCNA_00605 0.60 +2.1
641,592 - CCNA_00605 0.60 +1.0
641,615 - CCNA_00605 0.62 +1.4
641,662 + CCNA_00605 0.68 -1.4
641,671 - CCNA_00605 0.70 +2.1
641,703 - CCNA_00605 0.74 +1.5
641,720 + CCNA_00605 0.76 -2.3
641,732 + CCNA_00605 0.77 -1.3
641,738 + CCNA_00605 0.78 -3.9
641,738 + CCNA_00605 0.78 +2.4
641,745 + CCNA_00605 0.79 -1.7
641,746 - CCNA_00605 0.79 +1.1
641,753 - CCNA_00605 0.80 +1.2
641,763 - CCNA_00605 0.81 +1.2
641,799 + CCNA_00605 0.86 -1.1
641,799 + CCNA_00605 0.86 -1.6
641,799 + CCNA_00605 0.86 -0.2
641,799 + CCNA_00605 0.86 -1.6
641,807 - CCNA_00605 0.87 +2.3
641,807 - CCNA_00605 0.87 +0.5
641,807 - CCNA_00605 0.87 +2.6
641,807 - +3.7
641,807 - CCNA_00605 0.87 +0.8
641,807 - CCNA_00605 0.87 -1.2
641,807 - CCNA_00605 0.87 +1.0
641,818 + CCNA_00605 0.88 +0.4
641,823 + CCNA_00605 0.89 -0.7
641,823 - CCNA_00605 0.89 +0.1
641,831 - CCNA_00605 0.90 +1.4
641,831 - CCNA_00605 0.90 +1.1
641,831 - CCNA_00605 0.90 +1.3
641,831 - CCNA_00605 0.90 +1.7
641,831 - CCNA_00605 0.90 -0.1
641,831 - CCNA_00605 0.90 +1.4
641,831 - CCNA_00605 0.90 +1.5
641,831 - CCNA_00605 0.90 +0.8
641,831 - CCNA_00605 0.90 +0.8
641,844 + -1.2
641,852 - +2.2
641,852 - +1.2
641,852 - +1.2
641,874 + -0.4
641,882 - +1.6
641,882 - +0.4
641,950 - -1.4
641,957 - +1.0
641,957 - -1.7
641,981 + -1.2
641,989 + +0.3
641,989 - -1.8
641,997 - -2.1
641,998 + +2.0

Or see this region's nucleotide sequence