Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00348

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00346 and CCNA_00347 are separated by 89 nucleotidesCCNA_00347 and CCNA_00348 are separated by 129 nucleotidesCCNA_00348 and CCNA_00349 are separated by 173 nucleotides CCNA_00346: CCNA_00346 - dihydrolipoamide dehydrogenase, at 360,419 to 361,819 _00346 CCNA_00347: CCNA_00347 - hypothetical protein, at 361,909 to 362,088 _00347 CCNA_00348: CCNA_00348 - methyl-accepting chemotaxis protein, at 362,218 to 364,221 _00348 CCNA_00349: CCNA_00349 - integrase/recombinase, XerC-CodV family, at 364,395 to 365,309 _00349 Position (kb) 362 363 364 365Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 361.827 kb on - strandat 361.865 kb on - strandat 361.991 kb on - strand, within CCNA_00347at 362.006 kb on + strand, within CCNA_00347at 362.008 kb on - strand, within CCNA_00347at 362.010 kb on - strand, within CCNA_00347at 362.096 kb on + strandat 362.179 kb on + strandat 362.196 kb on + strandat 362.204 kb on - strandat 362.258 kb on + strandat 362.258 kb on + strandat 362.267 kb on + strandat 362.328 kb on - strandat 362.437 kb on + strand, within CCNA_00348at 362.544 kb on - strand, within CCNA_00348at 362.546 kb on + strand, within CCNA_00348at 362.554 kb on - strand, within CCNA_00348at 362.577 kb on - strand, within CCNA_00348at 362.577 kb on - strand, within CCNA_00348at 362.601 kb on - strand, within CCNA_00348at 362.662 kb on + strand, within CCNA_00348at 362.730 kb on + strand, within CCNA_00348at 362.738 kb on + strand, within CCNA_00348at 362.746 kb on - strand, within CCNA_00348at 362.746 kb on - strand, within CCNA_00348at 362.770 kb on - strand, within CCNA_00348at 362.787 kb on - strand, within CCNA_00348at 362.787 kb on - strand, within CCNA_00348at 362.787 kb on - strand, within CCNA_00348at 362.787 kb on - strand, within CCNA_00348at 362.934 kb on - strand, within CCNA_00348at 362.937 kb on + strand, within CCNA_00348at 362.967 kb on - strand, within CCNA_00348at 363.009 kb on + strand, within CCNA_00348at 363.009 kb on + strand, within CCNA_00348at 363.017 kb on - strand, within CCNA_00348at 363.017 kb on - strand, within CCNA_00348at 363.017 kb on - strand, within CCNA_00348at 363.066 kb on - strand, within CCNA_00348at 363.092 kb on - strand, within CCNA_00348at 363.204 kb on - strand, within CCNA_00348at 363.208 kb on - strand, within CCNA_00348at 363.262 kb on + strand, within CCNA_00348at 363.280 kb on + strand, within CCNA_00348at 363.312 kb on - strand, within CCNA_00348at 363.317 kb on + strand, within CCNA_00348at 363.332 kb on + strand, within CCNA_00348at 363.337 kb on + strand, within CCNA_00348at 363.337 kb on + strand, within CCNA_00348at 363.339 kb on - strand, within CCNA_00348at 363.342 kb on + strand, within CCNA_00348at 363.356 kb on + strand, within CCNA_00348at 363.364 kb on - strand, within CCNA_00348at 363.366 kb on + strand, within CCNA_00348at 363.389 kb on + strand, within CCNA_00348at 363.401 kb on + strand, within CCNA_00348at 363.433 kb on + strand, within CCNA_00348at 363.433 kb on + strand, within CCNA_00348at 363.433 kb on + strand, within CCNA_00348at 363.441 kb on - strand, within CCNA_00348at 363.446 kb on - strand, within CCNA_00348at 363.446 kb on - strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.468 kb on - strand, within CCNA_00348at 363.468 kb on - strand, within CCNA_00348at 363.468 kb on - strand, within CCNA_00348at 363.468 kb on - strand, within CCNA_00348at 363.475 kb on + strand, within CCNA_00348at 363.475 kb on + strand, within CCNA_00348at 363.478 kb on - strand, within CCNA_00348at 363.478 kb on - strand, within CCNA_00348at 363.483 kb on - strand, within CCNA_00348at 363.487 kb on + strand, within CCNA_00348at 363.490 kb on - strand, within CCNA_00348at 363.495 kb on - strand, within CCNA_00348at 363.532 kb on + strand, within CCNA_00348at 363.535 kb on - strand, within CCNA_00348at 363.540 kb on - strand, within CCNA_00348at 363.547 kb on + strand, within CCNA_00348at 363.554 kb on + strand, within CCNA_00348at 363.554 kb on + strand, within CCNA_00348at 363.608 kb on + strand, within CCNA_00348at 363.613 kb on + strand, within CCNA_00348at 363.614 kb on - strand, within CCNA_00348at 363.616 kb on - strand, within CCNA_00348at 363.621 kb on - strand, within CCNA_00348at 363.663 kb on - strand, within CCNA_00348at 363.725 kb on + strand, within CCNA_00348at 363.725 kb on + strand, within CCNA_00348at 363.728 kb on - strand, within CCNA_00348at 363.733 kb on - strand, within CCNA_00348at 363.779 kb on + strand, within CCNA_00348at 363.822 kb on + strand, within CCNA_00348at 363.830 kb on - strand, within CCNA_00348at 363.844 kb on + strand, within CCNA_00348at 363.844 kb on + strand, within CCNA_00348at 363.845 kb on + strand, within CCNA_00348at 363.852 kb on - strand, within CCNA_00348at 363.852 kb on - strand, within CCNA_00348at 363.853 kb on - strand, within CCNA_00348at 363.856 kb on + strand, within CCNA_00348at 363.856 kb on + strand, within CCNA_00348at 363.866 kb on + strand, within CCNA_00348at 363.908 kb on - strand, within CCNA_00348at 363.908 kb on - strand, within CCNA_00348at 363.919 kb on - strand, within CCNA_00348at 363.940 kb on + strand, within CCNA_00348at 363.950 kb on - strand, within CCNA_00348at 363.962 kb on + strand, within CCNA_00348at 363.975 kb on - strand, within CCNA_00348at 363.981 kb on + strand, within CCNA_00348at 363.989 kb on - strand, within CCNA_00348at 363.999 kb on - strand, within CCNA_00348at 364.024 kb on + strandat 364.053 kb on - strandat 364.053 kb on - strandat 364.067 kb on - strandat 364.124 kb on - strandat 364.136 kb on + strandat 364.157 kb on + strandat 364.276 kb on + strandat 364.283 kb on + strandat 364.312 kb on - strandat 364.339 kb on + strandat 364.339 kb on + strandat 364.345 kb on - strandat 364.399 kb on + strandat 364.399 kb on + strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.468 kb on + strandat 364.481 kb on - strandat 364.493 kb on + strand, within CCNA_00349at 364.494 kb on + strand, within CCNA_00349at 364.504 kb on + strand, within CCNA_00349at 364.535 kb on - strand, within CCNA_00349at 364.557 kb on - strand, within CCNA_00349at 364.572 kb on - strand, within CCNA_00349at 364.581 kb on - strand, within CCNA_00349at 364.622 kb on - strand, within CCNA_00349at 364.630 kb on + strand, within CCNA_00349at 364.638 kb on - strand, within CCNA_00349at 364.654 kb on + strand, within CCNA_00349at 364.672 kb on - strand, within CCNA_00349at 364.687 kb on + strand, within CCNA_00349at 364.707 kb on + strand, within CCNA_00349at 364.729 kb on + strand, within CCNA_00349at 364.747 kb on + strand, within CCNA_00349at 364.836 kb on - strand, within CCNA_00349at 364.838 kb on + strand, within CCNA_00349at 364.843 kb on + strand, within CCNA_00349at 364.846 kb on - strand, within CCNA_00349at 364.857 kb on + strand, within CCNA_00349at 364.857 kb on + strand, within CCNA_00349at 364.865 kb on - strand, within CCNA_00349at 364.865 kb on - strand, within CCNA_00349at 364.865 kb on - strand, within CCNA_00349at 364.865 kb on - strand, within CCNA_00349at 364.905 kb on + strand, within CCNA_00349at 364.913 kb on - strand, within CCNA_00349at 364.977 kb on - strand, within CCNA_00349at 365.003 kb on - strand, within CCNA_00349at 365.017 kb on + strand, within CCNA_00349at 365.017 kb on + strand, within CCNA_00349at 365.063 kb on + strand, within CCNA_00349at 365.065 kb on + strand, within CCNA_00349at 365.065 kb on + strand, within CCNA_00349at 365.073 kb on - strand, within CCNA_00349at 365.073 kb on - strand, within CCNA_00349at 365.092 kb on - strand, within CCNA_00349at 365.098 kb on - strand, within CCNA_00349at 365.113 kb on - strand, within CCNA_00349at 365.118 kb on - strand, within CCNA_00349at 365.153 kb on - strand, within CCNA_00349at 365.165 kb on + strand, within CCNA_00349at 365.166 kb on + strand, within CCNA_00349at 365.166 kb on + strand, within CCNA_00349at 365.174 kb on - strand, within CCNA_00349at 365.174 kb on - strand, within CCNA_00349at 365.189 kb on + strand, within CCNA_00349

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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361,827 - +3.1
361,865 - +1.2
361,991 - CCNA_00347 0.46 +1.8
362,006 + CCNA_00347 0.54 +1.7
362,008 - CCNA_00347 0.55 +0.5
362,010 - CCNA_00347 0.56 +0.4
362,096 + +0.8
362,179 + +1.2
362,196 + +0.2
362,204 - +1.2
362,258 + +0.4
362,258 + +0.5
362,267 + +0.5
362,328 - +1.8
362,437 + CCNA_00348 0.11 +2.8
362,544 - CCNA_00348 0.16 +1.2
362,546 + CCNA_00348 0.16 +1.1
362,554 - CCNA_00348 0.17 -0.1
362,577 - CCNA_00348 0.18 +3.8
362,577 - CCNA_00348 0.18 +1.3
362,601 - CCNA_00348 0.19 +0.4
362,662 + CCNA_00348 0.22 -0.3
362,730 + CCNA_00348 0.26 -0.5
362,738 + CCNA_00348 0.26 -0.1
362,746 - CCNA_00348 0.26 +0.5
362,746 - CCNA_00348 0.26 +1.3
362,770 - CCNA_00348 0.28 +2.2
362,787 - CCNA_00348 0.28 +0.7
362,787 - CCNA_00348 0.28 +0.1
362,787 - CCNA_00348 0.28 +1.2
362,787 - CCNA_00348 0.28 +1.2
362,934 - CCNA_00348 0.36 +1.3
362,937 + CCNA_00348 0.36 -1.0
362,967 - CCNA_00348 0.37 +1.2
363,009 + CCNA_00348 0.39 +0.7
363,009 + CCNA_00348 0.39 -0.5
363,017 - CCNA_00348 0.40 +1.3
363,017 - CCNA_00348 0.40 +1.4
363,017 - CCNA_00348 0.40 +0.1
363,066 - CCNA_00348 0.42 +0.7
363,092 - CCNA_00348 0.44 +0.9
363,204 - CCNA_00348 0.49 +1.2
363,208 - CCNA_00348 0.49 +1.2
363,262 + CCNA_00348 0.52 +0.6
363,280 + CCNA_00348 0.53 +1.8
363,312 - CCNA_00348 0.55 +0.4
363,317 + CCNA_00348 0.55 -0.2
363,332 + CCNA_00348 0.56 +0.4
363,337 + CCNA_00348 0.56 +0.5
363,337 + CCNA_00348 0.56 +0.9
363,339 - CCNA_00348 0.56 +0.6
363,342 + CCNA_00348 0.56 -0.8
363,356 + CCNA_00348 0.57 +0.7
363,364 - CCNA_00348 0.57 +1.1
363,366 + CCNA_00348 0.57 -0.0
363,389 + CCNA_00348 0.58 +0.3
363,401 + CCNA_00348 0.59 -1.0
363,433 + CCNA_00348 0.61 -1.0
363,433 + CCNA_00348 0.61 -1.5
363,433 + CCNA_00348 0.61 +0.3
363,441 - CCNA_00348 0.61 +1.2
363,446 - CCNA_00348 0.61 +0.7
363,446 - CCNA_00348 0.61 +1.2
363,460 + CCNA_00348 0.62 +0.7
363,460 + CCNA_00348 0.62 +1.0
363,460 + CCNA_00348 0.62 +1.1
363,460 + CCNA_00348 0.62 +1.0
363,460 + CCNA_00348 0.62 +0.5
363,460 + CCNA_00348 0.62 +1.4
363,468 - CCNA_00348 0.62 +1.8
363,468 - CCNA_00348 0.62 +0.3
363,468 - CCNA_00348 0.62 +1.0
363,468 - CCNA_00348 0.62 +2.0
363,475 + CCNA_00348 0.63 -0.2
363,475 + CCNA_00348 0.63 +1.1
363,478 - CCNA_00348 0.63 +0.7
363,478 - CCNA_00348 0.63 +1.3
363,483 - CCNA_00348 0.63 +0.7
363,487 + CCNA_00348 0.63 -0.2
363,490 - CCNA_00348 0.63 +1.6
363,495 - CCNA_00348 0.64 +1.4
363,532 + CCNA_00348 0.66 +1.9
363,535 - CCNA_00348 0.66 +1.6
363,540 - CCNA_00348 0.66 +0.5
363,547 + CCNA_00348 0.66 -0.8
363,554 + CCNA_00348 0.67 +0.9
363,554 + CCNA_00348 0.67 -0.8
363,608 + CCNA_00348 0.69 +2.0
363,613 + CCNA_00348 0.70 +0.3
363,614 - CCNA_00348 0.70 +1.8
363,616 - CCNA_00348 0.70 +1.1
363,621 - CCNA_00348 0.70 +1.7
363,663 - CCNA_00348 0.72 +0.7
363,725 + CCNA_00348 0.75 +0.2
363,725 + CCNA_00348 0.75 +0.2
363,728 - CCNA_00348 0.75 -0.2
363,733 - CCNA_00348 0.76 +1.4
363,779 + CCNA_00348 0.78 -0.6
363,822 + CCNA_00348 0.80 -2.4
363,830 - CCNA_00348 0.80 +1.6
363,844 + CCNA_00348 0.81 -1.8
363,844 + CCNA_00348 0.81 -3.2
363,845 + CCNA_00348 0.81 -1.1
363,852 - CCNA_00348 0.82 +1.6
363,852 - CCNA_00348 0.82 +1.4
363,853 - CCNA_00348 0.82 +1.8
363,856 + CCNA_00348 0.82 -1.1
363,856 + CCNA_00348 0.82 -0.2
363,866 + CCNA_00348 0.82 -0.4
363,908 - CCNA_00348 0.84 +0.8
363,908 - CCNA_00348 0.84 +0.4
363,919 - CCNA_00348 0.85 +0.8
363,940 + CCNA_00348 0.86 -1.2
363,950 - CCNA_00348 0.86 +1.4
363,962 + CCNA_00348 0.87 -1.1
363,975 - CCNA_00348 0.88 +1.7
363,981 + CCNA_00348 0.88 -0.1
363,989 - CCNA_00348 0.88 +2.8
363,999 - CCNA_00348 0.89 +2.4
364,024 + +0.5
364,053 - +1.0
364,053 - -0.6
364,067 - -0.3
364,124 - +2.1
364,136 + -0.4
364,157 + +2.5
364,276 + +0.2
364,283 + -0.1
364,312 - -0.8
364,339 + +0.2
364,339 + -0.8
364,345 - -0.3
364,399 + +1.6
364,399 + +0.2
364,407 - +0.6
364,407 - +0.1
364,407 - +0.3
364,407 - +0.3
364,407 - +0.5
364,468 + +0.2
364,481 - -1.1
364,493 + CCNA_00349 0.11 +0.7
364,494 + CCNA_00349 0.11 -1.0
364,504 + CCNA_00349 0.12 +0.9
364,535 - CCNA_00349 0.15 +1.3
364,557 - CCNA_00349 0.18 -0.6
364,572 - CCNA_00349 0.19 +0.7
364,581 - CCNA_00349 0.20 +0.1
364,622 - CCNA_00349 0.25 -0.8
364,630 + CCNA_00349 0.26 +0.0
364,638 - CCNA_00349 0.27 -0.2
364,654 + CCNA_00349 0.28 -0.4
364,672 - CCNA_00349 0.30 -1.3
364,687 + CCNA_00349 0.32 -0.8
364,707 + CCNA_00349 0.34 -2.5
364,729 + CCNA_00349 0.37 -1.8
364,747 + CCNA_00349 0.38 +1.5
364,836 - CCNA_00349 0.48 +0.7
364,838 + CCNA_00349 0.48 -0.9
364,843 + CCNA_00349 0.49 +0.3
364,846 - CCNA_00349 0.49 -0.4
364,857 + CCNA_00349 0.50 -1.5
364,857 + CCNA_00349 0.50 -2.5
364,865 - CCNA_00349 0.51 +0.4
364,865 - CCNA_00349 0.51 +1.4
364,865 - CCNA_00349 0.51 -0.3
364,865 - CCNA_00349 0.51 +0.8
364,905 + CCNA_00349 0.56 -1.7
364,913 - CCNA_00349 0.57 +0.4
364,977 - CCNA_00349 0.64 +1.9
365,003 - CCNA_00349 0.66 +0.9
365,017 + CCNA_00349 0.68 +0.3
365,017 + CCNA_00349 0.68 -1.1
365,063 + CCNA_00349 0.73 -0.9
365,065 + CCNA_00349 0.73 +0.5
365,065 + CCNA_00349 0.73 -0.6
365,073 - CCNA_00349 0.74 -1.0
365,073 - CCNA_00349 0.74 -2.4
365,092 - CCNA_00349 0.76 -1.5
365,098 - CCNA_00349 0.77 -1.2
365,113 - CCNA_00349 0.78 -0.2
365,118 - CCNA_00349 0.79 +1.2
365,153 - CCNA_00349 0.83 +0.5
365,165 + CCNA_00349 0.84 -2.0
365,166 + CCNA_00349 0.84 -0.3
365,166 + CCNA_00349 0.84 -2.4
365,174 - CCNA_00349 0.85 +1.1
365,174 - CCNA_00349 0.85 +0.8
365,189 + CCNA_00349 0.87 -0.7

Or see this region's nucleotide sequence