Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22355

Experiment: R2A with Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS22350 and CA265_RS22355 are separated by 111 nucleotidesCA265_RS22355 and CA265_RS22360 are separated by 247 nucleotides CA265_RS22350: CA265_RS22350 - diacylglycerol kinase, at 5,487,676 to 5,488,578 _RS22350 CA265_RS22355: CA265_RS22355 - translation initiation factor, at 5,488,690 to 5,489,040 _RS22355 CA265_RS22360: CA265_RS22360 - hypothetical protein, at 5,489,288 to 5,490,877 _RS22360 Position (kb) 5488 5489 5490Strain fitness (log2 ratio) -2 -1 0 1 2at 5487.774 kb on + strand, within CA265_RS22350at 5487.775 kb on - strand, within CA265_RS22350at 5487.830 kb on - strand, within CA265_RS22350at 5487.830 kb on - strand, within CA265_RS22350at 5487.884 kb on + strand, within CA265_RS22350at 5487.885 kb on - strand, within CA265_RS22350at 5487.939 kb on - strand, within CA265_RS22350at 5488.051 kb on - strand, within CA265_RS22350at 5488.130 kb on + strand, within CA265_RS22350at 5488.207 kb on + strand, within CA265_RS22350at 5488.210 kb on - strand, within CA265_RS22350at 5488.223 kb on - strand, within CA265_RS22350at 5488.223 kb on - strand, within CA265_RS22350at 5488.223 kb on - strand, within CA265_RS22350at 5488.353 kb on - strand, within CA265_RS22350at 5488.359 kb on + strand, within CA265_RS22350at 5488.399 kb on + strand, within CA265_RS22350at 5488.435 kb on - strand, within CA265_RS22350at 5488.435 kb on - strand, within CA265_RS22350at 5488.514 kb on + strandat 5488.581 kb on - strandat 5488.626 kb on + strandat 5488.735 kb on + strand, within CA265_RS22355at 5488.736 kb on - strand, within CA265_RS22355at 5488.736 kb on - strand, within CA265_RS22355at 5488.780 kb on - strand, within CA265_RS22355at 5488.786 kb on - strand, within CA265_RS22355at 5488.817 kb on + strand, within CA265_RS22355at 5488.817 kb on + strand, within CA265_RS22355at 5488.818 kb on - strand, within CA265_RS22355at 5488.859 kb on + strand, within CA265_RS22355at 5488.859 kb on + strand, within CA265_RS22355at 5488.860 kb on - strand, within CA265_RS22355at 5488.896 kb on + strandat 5489.053 kb on - strandat 5489.103 kb on + strandat 5489.140 kb on - strandat 5489.152 kb on + strandat 5489.183 kb on + strandat 5489.183 kb on + strandat 5489.184 kb on - strandat 5489.187 kb on + strandat 5489.188 kb on - strandat 5489.188 kb on - strandat 5489.238 kb on - strandat 5489.272 kb on - strandat 5489.354 kb on - strandat 5489.372 kb on + strandat 5489.408 kb on + strandat 5489.425 kb on - strandat 5489.459 kb on - strand, within CA265_RS22360at 5489.498 kb on - strand, within CA265_RS22360at 5489.498 kb on - strand, within CA265_RS22360at 5489.498 kb on - strand, within CA265_RS22360at 5489.545 kb on - strand, within CA265_RS22360at 5489.568 kb on - strand, within CA265_RS22360at 5489.572 kb on - strand, within CA265_RS22360at 5489.637 kb on - strand, within CA265_RS22360at 5489.659 kb on - strand, within CA265_RS22360at 5489.669 kb on + strand, within CA265_RS22360at 5489.686 kb on - strand, within CA265_RS22360at 5489.696 kb on - strand, within CA265_RS22360at 5489.700 kb on + strand, within CA265_RS22360at 5489.707 kb on + strand, within CA265_RS22360at 5489.716 kb on - strand, within CA265_RS22360at 5489.771 kb on + strand, within CA265_RS22360at 5489.776 kb on + strand, within CA265_RS22360at 5489.810 kb on - strand, within CA265_RS22360at 5489.815 kb on - strand, within CA265_RS22360at 5489.862 kb on + strand, within CA265_RS22360at 5489.911 kb on + strand, within CA265_RS22360at 5489.912 kb on - strand, within CA265_RS22360at 5489.924 kb on + strand, within CA265_RS22360at 5489.924 kb on + strand, within CA265_RS22360at 5489.924 kb on + strand, within CA265_RS22360at 5489.932 kb on - strand, within CA265_RS22360at 5489.944 kb on + strand, within CA265_RS22360at 5490.020 kb on - strand, within CA265_RS22360

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nalidixic 0.008 mg/ml
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5,487,774 + CA265_RS22350 0.11 -0.5
5,487,775 - CA265_RS22350 0.11 -0.8
5,487,830 - CA265_RS22350 0.17 -0.8
5,487,830 - CA265_RS22350 0.17 -0.5
5,487,884 + CA265_RS22350 0.23 +0.0
5,487,885 - CA265_RS22350 0.23 -1.0
5,487,939 - CA265_RS22350 0.29 +1.0
5,488,051 - CA265_RS22350 0.42 +1.1
5,488,130 + CA265_RS22350 0.50 +0.1
5,488,207 + CA265_RS22350 0.59 +0.3
5,488,210 - CA265_RS22350 0.59 -1.7
5,488,223 - CA265_RS22350 0.61 +0.6
5,488,223 - CA265_RS22350 0.61 -0.3
5,488,223 - CA265_RS22350 0.61 -1.5
5,488,353 - CA265_RS22350 0.75 +0.4
5,488,359 + CA265_RS22350 0.76 -0.5
5,488,399 + CA265_RS22350 0.80 +2.2
5,488,435 - CA265_RS22350 0.84 -1.3
5,488,435 - CA265_RS22350 0.84 +0.4
5,488,514 + -0.2
5,488,581 - -1.3
5,488,626 + -0.3
5,488,735 + CA265_RS22355 0.13 +0.2
5,488,736 - CA265_RS22355 0.13 +0.5
5,488,736 - CA265_RS22355 0.13 +0.7
5,488,780 - CA265_RS22355 0.26 -0.1
5,488,786 - CA265_RS22355 0.27 +0.4
5,488,817 + CA265_RS22355 0.36 +0.4
5,488,817 + CA265_RS22355 0.36 +1.8
5,488,818 - CA265_RS22355 0.36 +0.7
5,488,859 + CA265_RS22355 0.48 +0.7
5,488,859 + CA265_RS22355 0.48 -0.4
5,488,860 - CA265_RS22355 0.48 +1.6
5,488,896 + +1.8
5,489,053 - +0.2
5,489,103 + +0.4
5,489,140 - +0.5
5,489,152 + +0.3
5,489,183 + +1.7
5,489,183 + +0.4
5,489,184 - +1.0
5,489,187 + +1.2
5,489,188 - +0.9
5,489,188 - +0.4
5,489,238 - +1.8
5,489,272 - -0.6
5,489,354 - +0.2
5,489,372 + -0.7
5,489,408 + +0.6
5,489,425 - +0.6
5,489,459 - CA265_RS22360 0.11 +0.9
5,489,498 - CA265_RS22360 0.13 +0.1
5,489,498 - CA265_RS22360 0.13 +0.2
5,489,498 - CA265_RS22360 0.13 +0.1
5,489,545 - CA265_RS22360 0.16 +0.5
5,489,568 - CA265_RS22360 0.18 +0.8
5,489,572 - CA265_RS22360 0.18 -0.9
5,489,637 - CA265_RS22360 0.22 +1.3
5,489,659 - CA265_RS22360 0.23 +0.9
5,489,669 + CA265_RS22360 0.24 -0.4
5,489,686 - CA265_RS22360 0.25 +0.1
5,489,696 - CA265_RS22360 0.26 -0.1
5,489,700 + CA265_RS22360 0.26 -1.3
5,489,707 + CA265_RS22360 0.26 +0.9
5,489,716 - CA265_RS22360 0.27 +0.5
5,489,771 + CA265_RS22360 0.30 -0.8
5,489,776 + CA265_RS22360 0.31 -0.5
5,489,810 - CA265_RS22360 0.33 -0.6
5,489,815 - CA265_RS22360 0.33 +0.1
5,489,862 + CA265_RS22360 0.36 -0.1
5,489,911 + CA265_RS22360 0.39 -2.2
5,489,912 - CA265_RS22360 0.39 +0.1
5,489,924 + CA265_RS22360 0.40 -0.3
5,489,924 + CA265_RS22360 0.40 -0.0
5,489,924 + CA265_RS22360 0.40 -0.4
5,489,932 - CA265_RS22360 0.41 +0.0
5,489,944 + CA265_RS22360 0.41 -0.5
5,490,020 - CA265_RS22360 0.46 +0.3

Or see this region's nucleotide sequence