Experiment: R2A with Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21440 and CA265_RS21445 are separated by 381 nucleotides CA265_RS21445 and CA265_RS21450 are separated by 82 nucleotides
CA265_RS21440: CA265_RS21440 - peptidylprolyl isomerase, at 5,283,615 to 5,284,343
_RS21440
CA265_RS21445: CA265_RS21445 - exodeoxyribonuclease III, at 5,284,725 to 5,285,492
_RS21445
CA265_RS21450: CA265_RS21450 - imidazolonepropionase, at 5,285,575 to 5,286,822
_RS21450
Position (kb) 5284
5285
5286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5283.730 kb on + strand, within CA265_RS21440 at 5283.733 kb on - strand, within CA265_RS21440 at 5283.759 kb on - strand, within CA265_RS21440 at 5283.809 kb on + strand, within CA265_RS21440 at 5283.810 kb on - strand, within CA265_RS21440 at 5283.828 kb on - strand, within CA265_RS21440 at 5283.855 kb on - strand, within CA265_RS21440 at 5283.896 kb on + strand, within CA265_RS21440 at 5283.900 kb on + strand, within CA265_RS21440 at 5283.902 kb on + strand, within CA265_RS21440 at 5284.108 kb on + strand, within CA265_RS21440 at 5284.111 kb on - strand, within CA265_RS21440 at 5284.111 kb on - strand, within CA265_RS21440 at 5284.112 kb on + strand, within CA265_RS21440 at 5284.112 kb on + strand, within CA265_RS21440 at 5284.139 kb on - strand, within CA265_RS21440 at 5284.168 kb on + strand, within CA265_RS21440 at 5284.169 kb on - strand, within CA265_RS21440 at 5284.184 kb on + strand, within CA265_RS21440 at 5284.261 kb on + strand, within CA265_RS21440 at 5284.289 kb on - strand at 5284.322 kb on + strand at 5284.341 kb on + strand at 5284.362 kb on + strand at 5284.403 kb on - strand at 5284.407 kb on + strand at 5284.408 kb on - strand at 5284.490 kb on - strand at 5284.560 kb on + strand at 5284.564 kb on + strand at 5284.565 kb on - strand at 5284.565 kb on - strand at 5284.565 kb on - strand at 5284.565 kb on - strand at 5284.571 kb on - strand at 5284.672 kb on + strand at 5284.673 kb on - strand at 5284.673 kb on - strand at 5284.673 kb on - strand at 5284.719 kb on - strand at 5284.723 kb on - strand at 5284.800 kb on - strand at 5284.832 kb on - strand, within CA265_RS21445 at 5284.997 kb on + strand, within CA265_RS21445 at 5285.053 kb on - strand, within CA265_RS21445 at 5285.053 kb on - strand, within CA265_RS21445 at 5285.055 kb on - strand, within CA265_RS21445 at 5285.124 kb on + strand, within CA265_RS21445 at 5285.125 kb on - strand, within CA265_RS21445 at 5285.158 kb on + strand, within CA265_RS21445 at 5285.180 kb on + strand, within CA265_RS21445 at 5285.181 kb on - strand, within CA265_RS21445 at 5285.294 kb on + strand, within CA265_RS21445 at 5285.310 kb on - strand, within CA265_RS21445 at 5285.328 kb on + strand, within CA265_RS21445 at 5285.479 kb on + strand at 5285.598 kb on + strand at 5285.598 kb on + strand at 5285.814 kb on + strand, within CA265_RS21450 at 5285.926 kb on - strand, within CA265_RS21450 at 5286.075 kb on + strand, within CA265_RS21450 at 5286.148 kb on - strand, within CA265_RS21450 at 5286.166 kb on + strand, within CA265_RS21450 at 5286.166 kb on + strand, within CA265_RS21450 at 5286.320 kb on + strand, within CA265_RS21450 at 5286.354 kb on - strand, within CA265_RS21450 at 5286.373 kb on - strand, within CA265_RS21450 at 5286.373 kb on - strand, within CA265_RS21450 at 5286.418 kb on - strand, within CA265_RS21450 at 5286.449 kb on + strand, within CA265_RS21450 at 5286.450 kb on - strand, within CA265_RS21450 at 5286.455 kb on + strand, within CA265_RS21450 at 5286.480 kb on - strand, within CA265_RS21450 at 5286.483 kb on + strand, within CA265_RS21450 at 5286.484 kb on - strand, within CA265_RS21450
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nalidixic 0.008 mg/ml remove 5,283,730 + CA265_RS21440 0.16 +0.3 5,283,733 - CA265_RS21440 0.16 -0.7 5,283,759 - CA265_RS21440 0.20 -0.8 5,283,809 + CA265_RS21440 0.27 +0.6 5,283,810 - CA265_RS21440 0.27 -0.2 5,283,828 - CA265_RS21440 0.29 +0.4 5,283,855 - CA265_RS21440 0.33 -1.4 5,283,896 + CA265_RS21440 0.39 -0.5 5,283,900 + CA265_RS21440 0.39 -0.6 5,283,902 + CA265_RS21440 0.39 +0.4 5,284,108 + CA265_RS21440 0.68 +0.2 5,284,111 - CA265_RS21440 0.68 +1.6 5,284,111 - CA265_RS21440 0.68 +0.1 5,284,112 + CA265_RS21440 0.68 +0.2 5,284,112 + CA265_RS21440 0.68 +0.2 5,284,139 - CA265_RS21440 0.72 -0.3 5,284,168 + CA265_RS21440 0.76 -1.5 5,284,169 - CA265_RS21440 0.76 -0.2 5,284,184 + CA265_RS21440 0.78 -0.8 5,284,261 + CA265_RS21440 0.89 +0.3 5,284,289 - -0.7 5,284,322 + +2.5 5,284,341 + +1.2 5,284,362 + -2.1 5,284,403 - +0.2 5,284,407 + -0.1 5,284,408 - +0.8 5,284,490 - +0.4 5,284,560 + +0.6 5,284,564 + -0.4 5,284,565 - +1.2 5,284,565 - -0.1 5,284,565 - -0.6 5,284,565 - -0.1 5,284,571 - +0.7 5,284,672 + +0.5 5,284,673 - -2.0 5,284,673 - +0.9 5,284,673 - +0.2 5,284,719 - +0.2 5,284,723 - +0.4 5,284,800 - +0.1 5,284,832 - CA265_RS21445 0.14 -0.0 5,284,997 + CA265_RS21445 0.35 +1.3 5,285,053 - CA265_RS21445 0.43 +1.0 5,285,053 - CA265_RS21445 0.43 +0.6 5,285,055 - CA265_RS21445 0.43 +0.6 5,285,124 + CA265_RS21445 0.52 -0.0 5,285,125 - CA265_RS21445 0.52 +1.0 5,285,158 + CA265_RS21445 0.56 +1.2 5,285,180 + CA265_RS21445 0.59 -0.4 5,285,181 - CA265_RS21445 0.59 +1.5 5,285,294 + CA265_RS21445 0.74 +0.4 5,285,310 - CA265_RS21445 0.76 +0.6 5,285,328 + CA265_RS21445 0.79 +0.4 5,285,479 + -1.6 5,285,598 + -0.6 5,285,598 + +0.6 5,285,814 + CA265_RS21450 0.19 -0.7 5,285,926 - CA265_RS21450 0.28 +0.6 5,286,075 + CA265_RS21450 0.40 -0.8 5,286,148 - CA265_RS21450 0.46 -0.4 5,286,166 + CA265_RS21450 0.47 +0.9 5,286,166 + CA265_RS21450 0.47 +0.3 5,286,320 + CA265_RS21450 0.60 +0.2 5,286,354 - CA265_RS21450 0.62 +1.4 5,286,373 - CA265_RS21450 0.64 +0.2 5,286,373 - CA265_RS21450 0.64 -1.1 5,286,418 - CA265_RS21450 0.68 +0.1 5,286,449 + CA265_RS21450 0.70 -0.3 5,286,450 - CA265_RS21450 0.70 -1.4 5,286,455 + CA265_RS21450 0.71 +0.9 5,286,480 - CA265_RS21450 0.73 -0.1 5,286,483 + CA265_RS21450 0.73 +0.6 5,286,484 - CA265_RS21450 0.73 +0.2
Or see this region's nucleotide sequence