Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS20450

Experiment: R2A with Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nalidixic 0.008 mg/ml
5,054,995	+		CA265_RS20445	0.41	+0.3
5,054,995	+		CA265_RS20445	0.41	+0.2
5,054,998	-		CA265_RS20445	0.41	-0.3
5,055,040	-		CA265_RS20445	0.44	+0.3
5,055,040	-		CA265_RS20445	0.44	-0.3
5,055,074	+		CA265_RS20445	0.46	+0.1
5,055,075	-		CA265_RS20445	0.46	-0.2
5,055,151	+		CA265_RS20445	0.51	-0.1
5,055,154	+		CA265_RS20445	0.51	-0.6
5,055,155	-		CA265_RS20445	0.51	-2.3
5,055,220	-		CA265_RS20445	0.55	-1.3
5,055,238	+		CA265_RS20445	0.57	-2.2
5,055,298	-		CA265_RS20445	0.60	-1.1
5,055,374	+		CA265_RS20445	0.65	-0.2
5,055,374	+		CA265_RS20445	0.65	+1.1
5,055,374	+		CA265_RS20445	0.65	-1.2
5,055,374	+		CA265_RS20445	0.65	+0.1
5,055,375	-		CA265_RS20445	0.65	+0.4
5,055,375	-		CA265_RS20445	0.65	-0.4
5,055,427	+		CA265_RS20445	0.69	-1.1
5,055,428	-				+1.7
5,055,430	+		CA265_RS20445	0.69	+0.7
5,055,430	+		CA265_RS20445	0.69	-0.8
5,055,430	+		CA265_RS20445	0.69	-0.4
5,055,430	+		CA265_RS20445	0.69	+0.0
5,055,431	-		CA265_RS20445	0.69	+0.3
5,055,574	+		CA265_RS20445	0.78	-0.2
5,055,574	+		CA265_RS20445	0.78	-0.7
5,055,677	+		CA265_RS20445	0.85	-0.2
5,055,678	-		CA265_RS20445	0.85	+0.7
5,055,678	-		CA265_RS20445	0.85	-0.2
5,055,678	-		CA265_RS20445	0.85	-0.3
5,055,751	+		CA265_RS20445	0.89	+0.2
5,055,751	+				+1.3
5,055,752	-		CA265_RS20445	0.89	+0.6
5,055,764	-				-0.6
5,055,776	-				+0.1
5,055,833	+				-0.4
5,055,833	+				-0.6
5,055,834	-				+0.2
5,055,837	-				-0.1
5,055,837	-				+0.7
5,055,837	-				-0.6
5,055,862	-				+0.8
5,055,897	+				-0.3
5,055,897	+				+0.1
5,055,898	-				-0.7
5,055,918	-				+0.2
5,055,918	-				+0.0
5,055,935	+				-1.4
5,055,945	-				+1.5
5,055,945	-				+0.3
5,055,947	-				+0.0
5,055,953	+				-0.1
5,055,988	-				-0.9
5,056,018	-				+0.4
5,056,021	+				-0.5
5,056,022	-				-0.3
5,056,032	+				+0.0
5,056,121	+		CA265_RS20450	0.11	+0.7
5,056,122	-		CA265_RS20450	0.11	-0.9
5,056,129	-		CA265_RS20450	0.12	-0.3
5,056,177	+		CA265_RS20450	0.16	-0.9
5,056,178	-		CA265_RS20450	0.16	-0.2
5,056,205	+		CA265_RS20450	0.18	-1.1
5,056,206	-		CA265_RS20450	0.18	-2.0
5,056,233	-		CA265_RS20450	0.20	-0.3
5,056,246	+		CA265_RS20450	0.21	+0.7
5,056,290	+		CA265_RS20450	0.24	-2.7
5,056,291	-		CA265_RS20450	0.24	-0.4
5,056,352	-		CA265_RS20450	0.28	+0.7
5,056,378	+		CA265_RS20450	0.30	-0.1
5,056,419	-		CA265_RS20450	0.33	-0.4
5,056,469	-		CA265_RS20450	0.37	-0.5
5,056,469	-		CA265_RS20450	0.37	+0.6
5,056,475	-		CA265_RS20450	0.37	-0.4
5,056,530	+		CA265_RS20450	0.42	-1.2
5,056,531	-		CA265_RS20450	0.42	-0.3
5,056,555	+		CA265_RS20450	0.43	+0.3
5,056,631	+		CA265_RS20450	0.49	-1.1
5,056,711	-		CA265_RS20450	0.55	-0.3
5,056,752	-		CA265_RS20450	0.58	+0.0
5,056,756	+		CA265_RS20450	0.58	-0.1
5,056,757	-		CA265_RS20450	0.58	+0.8
5,056,779	-		CA265_RS20450	0.60	+0.1
5,056,921	+		CA265_RS20450	0.70	-0.7
5,056,940	-		CA265_RS20450	0.72	+1.7
5,056,943	-		CA265_RS20450	0.72	-0.6
5,056,977	-		CA265_RS20450	0.74	+0.7
5,056,979	+		CA265_RS20450	0.75	-0.4
5,057,011	+		CA265_RS20450	0.77	-0.7
5,057,098	+		CA265_RS20450	0.83	-1.9
5,057,099	-		CA265_RS20450	0.83	-0.2
5,057,162	+		CA265_RS20450	0.88	+1.7
5,057,162	+		CA265_RS20450	0.88	-0.3
5,057,163	-		CA265_RS20450	0.88	-0.3
5,057,212	+				+0.9
5,057,244	-				+0.7
5,057,253	+				+1.3
5,057,267	+				+0.8
5,057,268	-				+0.8
5,057,318	+				+1.1
5,057,434	+				+0.6
5,057,455	+				+1.2
5,057,526	+				+1.0
5,057,526	+				+0.4
5,057,527	-				-0.3
5,057,527	-				+0.7
5,057,527	-				-0.5
5,057,527	-				-0.4
5,057,584	-				+0.5
5,057,599	+				-0.4
5,057,599	+				-0.2
5,057,600	-				+1.2
5,057,604	-				-1.3
5,057,606	+				-0.9
5,057,606	+				+0.7
5,057,607	-				+0.6
5,057,613	+				+0.7
5,057,614	-				+0.3
5,057,614	-				+1.0
5,057,629	-				+0.1
5,057,690	-		CA265_RS20455	0.12	-0.3
5,057,716	-		CA265_RS20455	0.13	+0.3
5,057,720	-		CA265_RS20455	0.13	+0.3
5,057,720	-		CA265_RS20455	0.13	+0.2
5,057,763	+		CA265_RS20455	0.15	+0.8
5,057,763	+		CA265_RS20455	0.15	+0.9
5,057,767	+		CA265_RS20455	0.15	+0.7
5,057,767	+		CA265_RS20455	0.15	-1.7
5,057,767	+		CA265_RS20455	0.15	+0.4
5,057,767	+		CA265_RS20455	0.15	+0.3
5,057,767	+		CA265_RS20455	0.15	+1.3
5,057,768	-		CA265_RS20455	0.15	-0.1
5,057,808	+		CA265_RS20455	0.16	-0.2
5,057,809	-		CA265_RS20455	0.16	-0.2
5,057,813	+		CA265_RS20455	0.17	+0.7
5,057,814	-		CA265_RS20455	0.17	+0.4
5,057,872	-		CA265_RS20455	0.19	-1.1
5,057,959	+		CA265_RS20455	0.22	+0.2
5,058,007	+		CA265_RS20455	0.24	+0.8
5,058,007	+		CA265_RS20455	0.24	-0.1
5,058,007	+		CA265_RS20455	0.24	+1.1
5,058,010	-		CA265_RS20455	0.24	+0.2
5,058,010	-		CA265_RS20455	0.24	-0.1
5,058,031	+		CA265_RS20455	0.24	-1.4
5,058,055	+		CA265_RS20455	0.25	-0.3
5,058,087	+		CA265_RS20455	0.27	-0.4
5,058,154	+		CA265_RS20455	0.29	+0.7
5,058,281	-		CA265_RS20455	0.34	+1.9
5,058,284	+		CA265_RS20455	0.34	+0.5
5,058,284	+		CA265_RS20455	0.34	+0.2